biod/sambamba issues and pull requests

#364 - Readcount results are shifted for depth calculation when chrom id is not found in bam

Issue - State: closed - Opened by hassanfa about 6 years ago - 7 comments
Labels: enhancement

#362 - Error: read-modify-write operations are not allowed for `shared` variables.

Issue - State: closed - Opened by tillea about 6 years ago - 8 comments

#360 - sambamba depth with fix-mate-overlaps results in possible overflow

Issue - State: closed - Opened by hassanfa over 6 years ago - 5 comments
Labels: bug

#359 - Signed/Unsigned

Issue - State: closed - Opened by SergejN over 6 years ago - 12 comments
Labels: enhancement, later, help wanted

#344 - Version 0.6.7 fails to build on i386 but version 0.6.6 has build successfully

Issue - State: open - Opened by tillea over 6 years ago - 9 comments
Labels: bug, intermediate, help wanted

#340 - Assertion failure in `sambamba depth`

Issue - State: closed - Opened by hzpc-joostk almost 7 years ago - 2 comments
Labels: in progress, depth region

#334 - Add subsampling support

Issue - State: closed - Opened by pjotrp almost 7 years ago - 1 comment
Labels: enhancement, in progress

#327 - Sambamba view -F missing '*' character

Issue - State: closed - Opened by cshneider-zz almost 7 years ago - 1 comment

#325 - Optical duplicate calculation during markdup

Issue - State: closed - Opened by RichardCorbett almost 7 years ago - 2 comments
Labels: enhancement

#323 - Sambamba view is dropping reads when you specify a region

Issue - State: closed - Opened by carsonhh about 7 years ago - 1 comment

#315 - mpileup hangs if samtools would give empty output

Issue - State: closed - Opened by vladmihaisima about 7 years ago - 3 comments
Labels: bug, help wanted

#311 - sambamba depth skips a region in the BED

Issue - State: closed - Opened by harperfauni about 7 years ago - 3 comments
Labels: bug

#308 - sambamba view loses some reads

Issue - State: closed - Opened by fsandron over 7 years ago - 3 comments
Labels: bug, help wanted

#224 - sambamba-markdup: Read reference ID is out of range

Issue - State: closed - Opened by travc over 8 years ago - 19 comments
Labels: markdup

#221 - depth tool ignoring last base in interval

Issue - State: closed - Opened by mbootwalla over 8 years ago - 4 comments
Labels: Documentation

#189 - sambamba markdup deadlock

Issue - State: closed - Opened by tetron almost 9 years ago - 27 comments
Labels: markdup, hard to reproduce

#186 - Segmentation fault (core dumped) when viewing .bam

Issue - State: closed - Opened by TracyBallinger almost 9 years ago - 17 comments
Labels: bug, help wanted

#81 - Receive input from stdin - sambamba pipes

Issue - State: closed - Opened by afrendeiro over 10 years ago - 10 comments

Ecosyste.ms: Issues

GitHub / biod/sambamba issues and pull requests