Ecosyste.ms: Issues

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GitHub / biocypher/open-targets issues and pull requests

#25 - Evaluate polars as a replacement of pyspark

Issue - State: open - Opened by kpto 3 months ago
Labels: enhancement

#24 - Rename package and update dependencies

Pull Request - State: open - Opened by laulopezreal 3 months ago - 5 comments

#23 - Decompose the adapter into multiple cohesive modules housed in different files

Issue - State: open - Opened by kpto 3 months ago - 1 comment
Labels: enhancement, refactoring

#22 - Should the adapter be able to connect to a remote data store?

Issue - State: open - Opened by slobentanzer 3 months ago - 1 comment
Labels: question

#21 - Incorrect batching implementation

Issue - State: open - Opened by kpto 3 months ago - 5 comments
Labels: bug, enhancement

#20 - Devise robust adapter principle and backend

Issue - State: open - Opened by slobentanzer 3 months ago - 1 comment

#19 - Rename package to `open_targets`

Issue - State: open - Opened by slobentanzer 3 months ago
Labels: enhancement

#19 - Rename package to `open_targets`

Issue - State: open - Opened by slobentanzer 3 months ago
Labels: enhancement

#18 - Replace pyspark with duckdb

Issue - State: closed - Opened by kpto 3 months ago - 20 comments

#17 - Explore the possibility to remove the dependencies of Spark and Hadoop

Issue - State: open - Opened by kpto 4 months ago - 1 comment
Labels: enhancement

#16 - Retire-features

Pull Request - State: closed - Opened by slobentanzer 4 months ago - 2 comments

#14 - Error when running generating neo4j compatible files

Issue - State: open - Opened by Kabenla 4 months ago - 3 comments
Labels: bug

#13 - No documentation on how to run this project on Windows

Issue - State: open - Opened by kpto 4 months ago - 4 comments
Labels: documentation, enhancement

#12 - Make code flake8, mypy, black and isort compliant 🥸

Pull Request - State: closed - Opened by laulopezreal 4 months ago - 11 comments

#11 - Add Target -> GO Edges 👩🏼‍💻

Pull Request - State: closed - Opened by laulopezreal 4 months ago - 16 comments

#10 - Query on Open Targets Association Files

Issue - State: closed - Opened by shaileshchaudhary11 4 months ago - 1 comment

#9 - Add Drug Nodes 💊

Pull Request - State: closed - Opened by laulopezreal 5 months ago - 4 comments

#8 - Trouble adding new association.

Issue - State: closed - Opened by rahulmaurya1507 5 months ago - 4 comments
Labels: question

#7 - How to add new dataset like i want to add "Human Phenotype Ontology" using open-target.

Issue - State: closed - Opened by shaileshchaudhary11 7 months ago - 2 comments
Labels: question

#6 - Missing header on neo4j-admin import

Issue - State: closed - Opened by jma1991 over 1 year ago - 8 comments
Labels: question

#5 - Deal with `ontology` field of Disease nodes

Issue - State: open - Opened by slobentanzer over 1 year ago
Labels: enhancement

#4 - Make datasets optional based on adapter input definitions

Issue - State: open - Opened by slobentanzer over 1 year ago
Labels: enhancement

#3 - V0.5compat

Pull Request - State: closed - Opened by slobentanzer almost 2 years ago

#2 - Advanced restructuring: mouse phenotype -> target, literature associations -> articles

Issue - State: open - Opened by slobentanzer almost 2 years ago
Labels: enhancement

#1 - Dockerization init

Pull Request - State: closed - Opened by AndiMajore almost 2 years ago