Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / biocypher/biocypher issues and pull requests

#302 - Add Pandas/Colab tutorial of real-world data (collectri)

Issue - State: open - Opened by slobentanzer about 1 year ago - 1 comment

#301 - Bugfix resource caching

Pull Request - State: closed - Opened by nilskre about 1 year ago - 4 comments

#300 - Cached resource version is never used

Issue - State: closed - Opened by nilskre about 1 year ago

#299 - Tasks that can take a while: timed warning mechanism?

Issue - State: open - Opened by slobentanzer about 1 year ago

#298 - BioChatter instance to aid in KG creation workflow

Issue - State: open - Opened by slobentanzer about 1 year ago

#297 - Why are sometimes preferred ids not rendered in the ouput?

Issue - State: closed - Opened by slobentanzer about 1 year ago - 2 comments
Labels: bug

#295 - BioCypher scalability

Issue - State: open - Opened by marco-brandizi about 1 year ago - 1 comment

#294 - Interested in an RSE position?

Issue - State: closed - Opened by iulusoy about 1 year ago
Labels: help wanted, community

#293 - ICD

Issue - State: open - Opened by nilskre about 1 year ago

#292 - LOINC

Issue - State: open - Opened by nilskre about 1 year ago

#291 - SNOMED CT

Issue - State: closed - Opened by nilskre about 1 year ago

#290 - Have a "Docker" tag on the component board

Issue - State: open - Opened by slobentanzer about 1 year ago

#289 - fix issue #228: fix doctest and run docs build on PRs

Pull Request - State: closed - Opened by nilskre about 1 year ago

#288 - Doctest fails after `show_ontology_structure` changes

Issue - State: closed - Opened by slobentanzer about 1 year ago

#287 - Full OmniPath adapter

Issue - State: open - Opened by slobentanzer about 1 year ago - 1 comment

#286 - Bugfixes #284 #285

Pull Request - State: closed - Opened by nilskre over 1 year ago - 3 comments

#284 - Bug: Running BioCypher without defined schema fails

Issue - State: closed - Opened by nilskre over 1 year ago

#283 - Pyopensci really last fixes

Pull Request - State: closed - Opened by nilskre over 1 year ago

#282 - issue #278: fix ontology root label check

Pull Request - State: closed - Opened by nilskre over 1 year ago

#281 - Pyopsensci last fixes

Pull Request - State: closed - Opened by nilskre over 1 year ago

#280 - Pyopensci review

Pull Request - State: closed - Opened by slobentanzer over 1 year ago

#279 - Meta-programming input modules for adapters (OntoWeaver)

Issue - State: open - Opened by slobentanzer over 1 year ago - 1 comment

#278 - Ontology: Finding root label fails

Issue - State: closed - Opened by nilskre over 1 year ago - 3 comments

#277 - More support for schema_info generation

Pull Request - State: closed - Opened by slobentanzer over 1 year ago

#276 - Ontology

Pull Request - State: closed - Opened by slobentanzer over 1 year ago

#275 - Py open sci review part 3

Pull Request - State: closed - Opened by nilskre over 1 year ago

#274 - Py open sci review part 2

Pull Request - State: closed - Opened by nilskre over 1 year ago

#273 - Duplicated `tail_ontologies` fails in `create_tree_visualisation`

Issue - State: closed - Opened by jdreo over 1 year ago - 5 comments

#272 - Improve test coverage monitoring

Issue - State: open - Opened by nilskre over 1 year ago

#271 - test commit

Pull Request - State: closed - Opened by slobentanzer over 1 year ago

#270 - Py open sci review

Pull Request - State: closed - Opened by nilskre over 1 year ago - 9 comments

#269 - IgA Nephropathy KG

Issue - State: open - Opened by slobentanzer over 1 year ago

#268 - Get-module

Pull Request - State: closed - Opened by slobentanzer over 1 year ago

#267 - Add RelAsNode functionality to Pandas module

Issue - State: closed - Opened by slobentanzer over 1 year ago

#265 - Extend-schema

Pull Request - State: closed - Opened by slobentanzer over 1 year ago

#264 - Fork external biocypher pipelines and adapters in the org

Issue - State: open - Opened by slobentanzer over 1 year ago - 1 comment

#263 - Refactor ontology mapping and translation

Issue - State: closed - Opened by slobentanzer over 1 year ago

#262 - clinicaltrials.gov (API)

Issue - State: open - Opened by slobentanzer over 1 year ago

#261 - Add contribution guidelines to web docs

Issue - State: closed - Opened by slobentanzer over 1 year ago - 1 comment

#260 - Document postgres better

Issue - State: closed - Opened by slobentanzer over 1 year ago - 4 comments

#259 - Auto-publish to PyPI

Issue - State: closed - Opened by slobentanzer over 1 year ago - 14 comments

#257 - Fix postgres container version

Issue - State: closed - Opened by slobentanzer over 1 year ago

#255 - Remove test init file

Issue - State: closed - Opened by slobentanzer over 1 year ago

#254 - Replace single-letter variables everywhere (particularly tests)

Issue - State: closed - Opened by slobentanzer over 1 year ago - 3 comments

#253 - Lorem ipsum instead of random letters in data generator

Issue - State: closed - Opened by slobentanzer over 1 year ago - 3 comments

#252 - Execute code in documentation to identify outdated function calls

Issue - State: closed - Opened by slobentanzer over 1 year ago - 1 comment

#251 - Correct tutorial imports

Issue - State: closed - Opened by slobentanzer over 1 year ago - 6 comments

#250 - Format README badges as table

Issue - State: closed - Opened by slobentanzer over 1 year ago

#249 - "Napoleon" docstrings

Issue - State: closed - Opened by slobentanzer over 1 year ago

#248 - Docs: explain dependency groups

Issue - State: closed - Opened by slobentanzer over 1 year ago

#247 - Docs: Downstream usage example(s)

Issue - State: closed - Opened by slobentanzer over 1 year ago - 1 comment

#246 - Add CITATION.cff

Issue - State: closed - Opened by slobentanzer over 1 year ago - 1 comment

#245 - Copy number caller pipeline output (Hautaniemi)

Issue - State: open - Opened by slobentanzer over 1 year ago

#244 - Variant caller pipeline output (Hautaniemi)

Issue - State: open - Opened by slobentanzer over 1 year ago

#243 - DECIDER genetics workflow

Issue - State: open - Opened by slobentanzer over 1 year ago

#242 - UniProt Protein (IGVF)

Issue - State: open - Opened by slobentanzer over 1 year ago

#241 - Reactome Pathways

Issue - State: open - Opened by slobentanzer over 1 year ago

#240 - Reactome

Issue - State: open - Opened by slobentanzer over 1 year ago

#239 - HOCOMOCO

Issue - State: open - Opened by slobentanzer over 1 year ago

#238 - GWAS (Open Targets)

Issue - State: open - Opened by slobentanzer over 1 year ago

#237 - GENCODE Gene

Issue - State: open - Opened by slobentanzer over 1 year ago

#236 - GAF

Issue - State: open - Opened by slobentanzer over 1 year ago

#235 - ENCODE Enhancer Gene

Issue - State: open - Opened by slobentanzer over 1 year ago

#234 - Recon3D

Issue - State: open - Opened by slobentanzer over 1 year ago

#233 - Neuronchat

Issue - State: open - Opened by slobentanzer over 1 year ago

#232 - HMR

Issue - State: open - Opened by slobentanzer over 1 year ago

#231 - CellphoneDB metabolites

Issue - State: open - Opened by slobentanzer over 1 year ago

#230 - GTEx sQTL

Issue - State: open - Opened by slobentanzer over 1 year ago

#229 - COXPRESdb

Issue - State: open - Opened by slobentanzer over 1 year ago

#228 - Cellosaurus

Issue - State: open - Opened by slobentanzer over 1 year ago

#227 - Saezlab scheduling

Issue - State: open - Opened by slobentanzer over 1 year ago

#226 - Log to disk setting

Issue - State: closed - Opened by slobentanzer over 1 year ago

#225 - Custom Ontology

Issue - State: closed - Opened by a1012 over 1 year ago - 15 comments

#224 - add paper.md

Issue - State: closed - Opened by slobentanzer over 1 year ago - 1 comment

#223 - Tutorials: find a good solution for sharing the code or colabs

Issue - State: closed - Opened by slobentanzer over 1 year ago - 1 comment

#222 - add `paper.md`

Issue - State: closed - Opened by slobentanzer over 1 year ago

#221 - README: add badges

Issue - State: closed - Opened by slobentanzer over 1 year ago

#220 - Formatting: move to black

Issue - State: closed - Opened by slobentanzer over 1 year ago - 1 comment

#219 - Documentation: overhaul quickstart

Issue - State: closed - Opened by slobentanzer over 1 year ago

#218 - CI/CD: create workflow for running tests automatically on push

Issue - State: closed - Opened by slobentanzer over 1 year ago - 1 comment

#217 - Documentation: explain all abbreviations

Issue - State: closed - Opened by slobentanzer over 1 year ago - 1 comment

#215 - First minimal working version for rdf conversion

Pull Request - State: closed - Opened by supermaxiste over 1 year ago - 3 comments

#214 - Pandas Collab tutorial

Pull Request - State: closed - Opened by dbdimitrov over 1 year ago - 2 comments

#213 - Update README.md

Pull Request - State: closed - Opened by slobentanzer over 1 year ago

#212 - Optional-id

Pull Request - State: closed - Opened by slobentanzer over 1 year ago

#211 - Make edge IDs optional in batch writer

Issue - State: closed - Opened by slobentanzer over 1 year ago

#209 - draft pandas-tutorial in jupyter

Pull Request - State: closed - Opened by dbdimitrov over 1 year ago - 3 comments

#208 - IDs for edges in write output not functional

Issue - State: closed - Opened by slobentanzer over 1 year ago
Labels: bug

#207 - Pandas

Pull Request - State: closed - Opened by slobentanzer over 1 year ago

#206 - add sphinxext-opengraph support

Issue - State: closed - Opened by slobentanzer almost 2 years ago - 1 comment

#204 - Dependency Map

Issue - State: open - Opened by slobentanzer almost 2 years ago