Ecosyste.ms: Issues

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GitHub / biocypher/biochatter issues and pull requests

#99 - Communicate system messages to non-OpenAI models more clearly

Issue - State: open - Opened by slobentanzer about 1 year ago - 2 comments

#97 - Rag_agent

Pull Request - State: closed - Opened by slobentanzer about 1 year ago - 10 comments

#96 - issue #93: show benchmark results on docs page (first draft)

Pull Request - State: closed - Opened by nilskre about 1 year ago - 13 comments

#95 - Docs: document and link streamlit and next implementations

Issue - State: closed - Opened by slobentanzer about 1 year ago

#94 - Set up biochatter.org

Issue - State: closed - Opened by slobentanzer about 1 year ago

#93 - Data tables to show benchmark results on docs page

Issue - State: closed - Opened by slobentanzer about 1 year ago - 2 comments

#92 - Introduce AzureOpenAIEmbeddings for Azure OpenAI server

Pull Request - State: closed - Opened by fengsh27 about 1 year ago

#91 - Reduce dependency on xinference

Pull Request - State: closed - Opened by fengsh27 about 1 year ago

#90 - make rag to support embedded documents workspace

Pull Request - State: closed - Opened by fengsh27 about 1 year ago

#89 - embedding document workspace

Pull Request - State: closed - Opened by fengsh27 about 1 year ago

#89 - embedding document workspace

Pull Request - State: closed - Opened by fengsh27 about 1 year ago

#88 - add docstrings and improve modular structure

Pull Request - State: closed - Opened by nilskre about 1 year ago

#87 - Benchmark

Pull Request - State: closed - Opened by nilskre about 1 year ago - 1 comment

#85 - update wasm conversation to return tuple ..

Pull Request - State: closed - Opened by slobentanzer about 1 year ago

#85 - update wasm conversation to return tuple ..

Pull Request - State: closed - Opened by slobentanzer about 1 year ago

#84 - Provide BioChatter Server as a standalone and docker image

Issue - State: closed - Opened by slobentanzer about 1 year ago

#84 - Provide BioChatter Server as a standalone and docker image

Issue - State: closed - Opened by slobentanzer about 1 year ago

#83 - remove docker install from CI

Pull Request - State: closed - Opened by slobentanzer about 1 year ago

#82 - add `WasmConversation` as a way to communicate with ..

Pull Request - State: closed - Opened by slobentanzer about 1 year ago

#82 - add `WasmConversation` as a way to communicate with ..

Pull Request - State: closed - Opened by slobentanzer about 1 year ago

#79 - Update wasm.md

Pull Request - State: closed - Opened by xiaoranzhou about 1 year ago - 1 comment

#79 - Update wasm.md

Pull Request - State: open - Opened by xiaoranzhou about 1 year ago

#78 - CICD pipeline for benchmark execution

Issue - State: open - Opened by nilskre about 1 year ago

#77 - Prompt class merge to benchmark

Pull Request - State: open - Opened by YY-SONG0718 about 1 year ago

#76 - first commit for prompt engine using SQL schema definition

Pull Request - State: open - Opened by emmaver about 1 year ago

#75 - Expand prompts.py to work with SQL schema input

Issue - State: open - Opened by emmaver about 1 year ago - 1 comment

#74 - Add test for getting a query in SQL

Pull Request - State: closed - Opened by emmaver about 1 year ago

#73 - parametrize benchmark tests based on test data in csv; enable switchi…

Pull Request - State: closed - Opened by nilskre about 1 year ago - 1 comment

#73 - parametrize benchmark tests based on test data in csv; enable switchi…

Pull Request - State: closed - Opened by nilskre about 1 year ago - 1 comment

#72 - prompt as class

Issue - State: open - Opened by YY-SONG0718 about 1 year ago - 2 comments

#71 - Query interaction

Pull Request - State: closed - Opened by emmaver about 1 year ago

#70 - Numeric Extraction Benchmarking Framework

Pull Request - State: closed - Opened by fmdelgado about 1 year ago - 5 comments

#69 - Cicd release generation

Pull Request - State: closed - Opened by nilskre about 1 year ago

#67 - adjustment to message appending to account for ..

Pull Request - State: closed - Opened by slobentanzer about 1 year ago

#65 - Test_multi_word

Pull Request - State: closed - Opened by slobentanzer about 1 year ago - 3 comments

#64 - encrypted Hold-out test set for benchmarking

Issue - State: closed - Opened by nilskre about 1 year ago - 1 comment

#63 - small fixes in prompts.py

Pull Request - State: closed - Opened by emmaver about 1 year ago

#63 - small fixes in prompts.py

Pull Request - State: closed - Opened by emmaver about 1 year ago

#61 - Benchmarking: start and stop Xinference LLMs automatically

Issue - State: closed - Opened by slobentanzer about 1 year ago - 1 comment

#59 - Multi-word label query generation

Issue - State: closed - Opened by slobentanzer about 1 year ago - 4 comments

#59 - Multi-word label query generation

Issue - State: closed - Opened by slobentanzer about 1 year ago - 4 comments

#58 - Langchain-update

Pull Request - State: closed - Opened by slobentanzer about 1 year ago

#58 - Langchain-update

Pull Request - State: closed - Opened by slobentanzer about 1 year ago

#57 - OpenAI v1: azure endpoint definition has changed

Issue - State: closed - Opened by slobentanzer about 1 year ago - 1 comment

#55 - mock xinference client in tests

Pull Request - State: closed - Opened by fengsh27 about 1 year ago

#55 - mock xinference client in tests

Pull Request - State: closed - Opened by fengsh27 about 1 year ago

#54 - Benchmarking: how do we protect the test set?

Issue - State: closed - Opened by slobentanzer about 1 year ago - 1 comment

#53 - Benchmarking: knowledge extraction from scientific texts

Issue - State: closed - Opened by slobentanzer about 1 year ago - 1 comment

#53 - Benchmarking: knowledge extraction from scientific texts

Issue - State: closed - Opened by slobentanzer about 1 year ago - 1 comment

#52 - Chit-chat detection

Issue - State: open - Opened by slobentanzer about 1 year ago

#52 - Chit-chat detection

Issue - State: open - Opened by slobentanzer about 1 year ago

#51 - Benchmarking: candor of the model

Issue - State: closed - Opened by slobentanzer about 1 year ago

#51 - Benchmarking: candor of the model

Issue - State: closed - Opened by slobentanzer about 1 year ago

#50 - Documentation workflow

Pull Request - State: closed - Opened by slobentanzer about 1 year ago

#50 - Documentation workflow

Pull Request - State: closed - Opened by slobentanzer about 1 year ago

#49 - Mock OpenAI and Milvus server for test_vectordatabase and test_vectordata_host

Pull Request - State: closed - Opened by fengsh27 about 1 year ago - 2 comments

#49 - Mock OpenAI and Milvus server for test_vectordatabase and test_vectordata_host

Pull Request - State: closed - Opened by fengsh27 about 1 year ago - 2 comments

#47 - Podcast: mp3 file metadata

Issue - State: open - Opened by slobentanzer about 1 year ago

#46 - Podcast: merge mp3 files

Issue - State: open - Opened by slobentanzer about 1 year ago

#45 - Vector DB: connection_args not used in `connect()` method

Issue - State: closed - Opened by slobentanzer about 1 year ago - 2 comments

#44 - Prompt engineering: BioCypher config YAML explanation

Issue - State: open - Opened by slobentanzer about 1 year ago

#44 - Prompt engineering: BioCypher config YAML explanation

Issue - State: open - Opened by slobentanzer about 1 year ago

#43 - Store benchmark results in Redis DB

Issue - State: open - Opened by slobentanzer about 1 year ago

#43 - Store benchmark results in Redis DB

Issue - State: open - Opened by slobentanzer about 1 year ago

#41 - Autonomous agent: planning

Issue - State: open - Opened by slobentanzer about 1 year ago

#41 - Autonomous agent: planning

Issue - State: open - Opened by slobentanzer about 1 year ago

#38 - Benchmarking of prompts: datasets, questions, validations

Issue - State: closed - Opened by slobentanzer over 1 year ago - 5 comments

#37 - Internal control mechanism: extend to model chaining

Issue - State: open - Opened by slobentanzer over 1 year ago

#37 - Internal control mechanism: extend to model chaining

Issue - State: open - Opened by slobentanzer over 1 year ago

#33 - Security for file uploads and code execution?

Issue - State: open - Opened by slobentanzer over 1 year ago

#33 - Security for file uploads and code execution?

Issue - State: open - Opened by slobentanzer over 1 year ago

#31 - More documentation

Issue - State: closed - Opened by slobentanzer over 1 year ago