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GitHub / biocpy/delayedarray issues and pull requests

#67 - `__getitem__` should not collapse to an ndarray

Issue - State: open - Opened by LTLA 3 months ago

#66 - Collapse repeated operations to remove unnecessary delayed layers.

Pull Request - State: closed - Opened by LTLA 8 months ago

#65 - chore: remove Python 3.8 support

Pull Request - State: closed - Opened by jkanche 8 months ago

#63 - TODO list

Issue - State: closed - Opened by LTLA 9 months ago

#62 - Adding support for more numpy functions to DelayedArrays

Pull Request - State: closed - Opened by jkanche about 1 year ago

#60 - Assorted bugs to fix for 0.4.0

Issue - State: closed - Opened by LTLA over 1 year ago

#59 - Use block processing to compute basic statistics from a DelayedArray.

Pull Request - State: closed - Opened by LTLA over 1 year ago

#58 - Things to do for v0.4.0

Issue - State: closed - Opened by LTLA over 1 year ago

#57 - Support masking throughout the various operations and methods.

Pull Request - State: closed - Opened by LTLA over 1 year ago

#56 - Support masked values throughout the various layers.

Issue - State: closed - Opened by LTLA over 1 year ago

#55 - Fixes to support Python >= 3.8

Pull Request - State: closed - Opened by jkanche over 1 year ago

#54 - Introduced a wrap generic to dispatch construction to third-party subclasses.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#53 - Added extract_sparse_array methods for all scipy sparse matrices.

Pull Request - State: closed - Opened by LTLA almost 2 years ago - 1 comment

#52 - Support boolean indices in `__getitem__`

Issue - State: open - Opened by LTLA almost 2 years ago

#51 - Figure out how to deal with missing values

Issue - State: closed - Opened by LTLA almost 2 years ago

#50 - Switch to extract_sparse_array and extract_dense_array.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#49 - Restore the SparseNdarray, this time with all the operations.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#48 - Factored out tests for BinaryIsometricOp into their own file.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#47 - Added generic to check whether the delayed matrix is sparse.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#46 - Report 'best' chunk size for iteration over the matrix.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#45 - Make dask an optional dependency.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#44 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#43 - fix pre-commit

Pull Request - State: closed - Opened by jkanche almost 2 years ago

#42 - Stringify errors before warning, remove spurious shape-related warnings.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#41 - Workaround for correct loss of dimensions when slicing sparse matrices.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#40 - Emit warning whenever we have to catch an exception.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#39 - Enforce unique and sorted subsets in extract_array() calls.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#32 - Pass subsets to extract_array() when discarding dimensions.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#31 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#30 - More attempts to fix delayed evaluation for sparse matrices.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#29 - Extractor2

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#28 - More fixes for slices in DelayedArray.__getitem__.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#27 - Improvements to __getitem__ to align with NumPy slicing.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#26 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#25 - Align DelayedArray subsetting with how numpy works.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#24 - Added dedicated wrapper for delayed rounding.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#23 - Fixed test for division, added true_divide alias.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#22 - Cleaned up the documentation.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#21 - Added a delayed wrapper for casting to different types.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#20 - Added delayed wrapper for binary isometric operations.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#19 - Fleshed out the remaining isometric operations.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#18 - Added a delayed transposition operation.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#17 - Added a delayed combine layer.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#16 - Strip DelayedArray wrappers when invoking __array_ufunc__.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#15 - Infer the 'along' dimension from the array shape.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#14 - Rename operation= argument for consistency with attribute.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#13 - Sanitization

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#12 - Officially expose the internal attributes of each delayed layer.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#11 - Greatly simplified the code by switching to a dask backend.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#10 - Cleaned up the documentation.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#9 - update pre-commit config again

Pull Request - State: closed - Opened by jkanche almost 2 years ago

#8 - update pre-commit config

Pull Request - State: closed - Opened by jkanche almost 2 years ago

#7 - pre-commit bot

Pull Request - State: closed - Opened by jkanche almost 2 years ago - 2 comments

#6 - developer workflows

Pull Request - State: closed - Opened by jkanche almost 2 years ago

#5 - Added a delayed subset wrapper.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#4 - Began adding the DelayedArray wrapper.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#3 - Added wrapper for simple unary delayed operations.

Pull Request - State: closed - Opened by LTLA almost 2 years ago

#2 - packaging

Pull Request - State: closed - Opened by jkanche almost 2 years ago

#1 - Began cleaning up the delayed arithmetic operations.

Pull Request - State: closed - Opened by LTLA almost 2 years ago