biocore-ntnu/epic2 issues and pull requests

#74 - Int overflow when parsing ChIP files.

Issue - State: closed - Opened by vidal-adrien 11 months ago - 3 comments

#73 - Custom genome use isn't clear

Issue - State: open - Opened by c-guzman 12 months ago - 2 comments

#72 - epic2-df ValueError

Issue - State: open - Opened by PeterHHer about 1 year ago

#71 - epic2 installed but not working

Issue - State: open - Opened by ltosti over 1 year ago

#70 - Problem running epic2-df

Issue - State: open - Opened by Holmes815 over 1 year ago - 1 comment

#69 - epic2 does not work for custom genome

Issue - State: open - Opened by Turckie over 1 year ago - 2 comments

#68 - epic2-bw KeyError: 'required_flag' , doesn't appear in arg parser

Issue - State: open - Opened by a-lahat over 1 year ago - 2 comments

#67 - Error handling -1 positions in BEDPE files

Issue - State: open - Opened by bu-bgregor almost 2 years ago - 1 comment

#66 - Install error

Issue - State: open - Opened by hiroyukikato911 almost 2 years ago

#65 - Can epic2-df support biological replicates?

Issue - State: open - Opened by hdshu about 2 years ago - 1 comment

#64 - epic2 vs sicer2 1.0.3

Issue - State: open - Opened by darked89 about 2 years ago

#63 - Blacklist region handling

Issue - State: open - Opened by sitr1014 about 2 years ago - 1 comment

#62 - Epic2 running error caused by chromosome names in my alignment file

Issue - State: open - Opened by sitr1014 over 2 years ago - 1 comment

#61 - epic2 with bedpe input issue

Issue - State: open - Opened by yussufhajjaj over 2 years ago - 15 comments

#60 - built-in genome list

Issue - State: open - Opened by nermah1 over 2 years ago - 1 comment

#59 - how to use custom genome i.e. E. Coli in epic2 ?

Issue - State: open - Opened by Ankana001 over 2 years ago - 1 comment

#58 - Very different results of epic2 vs macs2

Issue - State: closed - Opened by kikegoni over 2 years ago - 1 comment

#57 - Error running epic2 v0.0.52

Issue - State: open - Opened by benayang almost 3 years ago - 6 comments

#56 - is v0.0.52 available on bioconda?

Issue - State: closed - Opened by tingliu-uhn almost 3 years ago - 3 comments

#55 - Are output coordinates one or zero-based?

Issue - State: open - Opened by rauldiul almost 3 years ago - 3 comments

#54 - ValueError: need more than 0 values to unpack

Issue - State: open - Opened by chenchen-eng about 3 years ago - 1 comment

#53 - epic2 Failed to install on Mac

Issue - State: open - Opened by jjp55 over 3 years ago - 7 comments

#52 - `epic2-bw` failed with KeyError: 'guess_bampe'

Issue - State: open - Opened by xie186 over 3 years ago - 4 comments

#51 - Library not loaded - Reason Image not found error

Issue - State: closed - Opened by sufyazi over 3 years ago - 2 comments

#50 - Bedpe

Issue - State: open - Opened by tan5251 over 3 years ago - 1 comment

#49 - median fragment size

Issue - State: open - Opened by tan5251 over 3 years ago - 2 comments

#48 - gap size

Issue - State: open - Opened by tan5251 over 3 years ago - 2 comments

#47 - effective genome size

Issue - State: open - Opened by tan5251 over 3 years ago - 2 comments

#46 - `guess_bampe` missing for `epic2-df`

Issue - State: closed - Opened by mzytnicki over 3 years ago - 7 comments

#45 - SyntaxError in epic2-0.0.47

Issue - State: open - Opened by dconnolly1 over 3 years ago - 3 comments

#44 - Epic2 with no input

Issue - State: open - Opened by nservant almost 4 years ago - 8 comments

#43 - epic2 running for ages without throwing any error

Issue - State: open - Opened by Bio-finder almost 4 years ago - 2 comments

#42 - error when running epic2-df example

Issue - State: open - Opened by smartgamer almost 4 years ago - 19 comments
Labels: help wanted

#41 - bam paired-end support not yet available for epic2 in current conda installation

Issue - State: closed - Opened by daveiles almost 4 years ago - 3 comments

#40 - Missing --guess-bampe argument

Issue - State: closed - Opened by KunFang93 about 4 years ago - 7 comments

#39 - epic2 installed but not working

Issue - State: open - Opened by pb016 about 4 years ago - 2 comments

#38 - Bampe format support

Pull Request - State: closed - Opened by alnfedorov about 4 years ago - 10 comments

#37 - epic2 ran as normal but didn't return outputs

Issue - State: closed - Opened by dcheng1 about 4 years ago - 6 comments

#36 - OverflowError reads_to_bins

Issue - State: closed - Opened by friederhadlich about 4 years ago - 24 comments

#35 - missing large domains

Issue - State: open - Opened by runningvato over 4 years ago - 8 comments

#34 - Unexpected behavior keep-duplicates 0.0.41

Issue - State: closed - Opened by mpaya almost 5 years ago - 5 comments

#33 - Start positions all end in 00

Issue - State: closed - Opened by melemieux almost 5 years ago - 2 comments

#32 - "Exception: Not valid subsetter: 1" while using epic2-df

Issue - State: closed - Opened by wesleylcai about 5 years ago - 16 comments

#31 - epic2 run error - Expected 72 from C header, got 88 from PyObject

Issue - State: closed - Opened by mbassalbioinformatics about 5 years ago - 4 comments

#30 - "failed building wheel for epic2" error during pip install

Issue - State: closed - Opened by sufyazi about 5 years ago - 11 comments

#29 - bedpe input not processed correctly

Issue - State: closed - Opened by ptrebert about 5 years ago - 17 comments

#28 - how to discard more than one chromosomes with parameter -d

Issue - State: closed - Opened by ShuangHe33 about 5 years ago - 4 comments

#27 - Linux install error

Issue - State: closed - Opened by radio1988 about 5 years ago - 2 comments

#26 - epic2 does not install

Issue - State: closed - Opened by MatthewMassett about 5 years ago - 10 comments

#25 - terminate called after throwing an instance of 'std::bad_alloc'

Issue - State: closed - Opened by balwierz about 5 years ago - 9 comments

#24 - paired-end bam input

Issue - State: closed - Opened by crazyhottommy over 5 years ago - 3 comments

#23 - error st::bad_alloc

Issue - State: closed - Opened by coraliegimonnet over 5 years ago - 1 comment

#22 - use epic2 for ATAC-seq?

Issue - State: open - Opened by YichaoOU over 5 years ago - 5 comments

#21 - epic2-bw KeyError: 'mapq'

Issue - State: open - Opened by YichaoOU over 5 years ago - 5 comments

#20 - need examples, epic2, epic2-bw, epic2-df

Issue - State: open - Opened by YichaoOU over 5 years ago - 5 comments

#19 - epic2-df, module error and version

Issue - State: closed - Opened by mpaya over 5 years ago - 4 comments

#18 - epic2-df eror on version 0.0.33

Issue - State: closed - Opened by Victor21v over 5 years ago - 2 comments

#17 - Install from source or w/o conda

Issue - State: closed - Opened by whositwhatnow over 5 years ago - 12 comments

#16 - epic2-df ValueError: No objects to concatenate

Issue - State: closed - Opened by naity over 5 years ago - 6 comments

#15 - Using option "--gaps-allowed" causes error

Issue - State: closed - Opened by keoughkath over 5 years ago - 17 comments

#14 - Epic2-df

Issue - State: closed - Opened by Victor21v over 5 years ago - 10 comments

#13 - Only changes with a positive log2FoldChange detected

Issue - State: closed - Opened by lutsik over 5 years ago - 7 comments

#12 - couldn't detect certain peaks

Issue - State: closed - Opened by smartgamer over 5 years ago - 15 comments

#11 - Epic2 with mm10/GRCm38

Issue - State: closed - Opened by sagarutturkar over 5 years ago - 3 comments

#10 - License of epic2

Issue - State: closed - Opened by mpaya over 5 years ago - 2 comments

#9 - Prepare genomes to use as built-in

Issue - State: closed - Opened by mpaya over 5 years ago - 1 comment

#8 - Package available at Conda

Issue - State: closed - Opened by mpaya over 5 years ago - 6 comments

#7 - output info

Issue - State: closed - Opened by MERobinson almost 6 years ago - 2 comments

#6 - Segmentation fault

Issue - State: closed - Opened by Victor21v almost 6 years ago - 3 comments

#5 - Trouble installing and using

Issue - State: closed - Opened by mpaya almost 6 years ago - 14 comments

#4 - Clarification on parameters

Issue - State: closed - Opened by rspreafico almost 6 years ago - 5 comments

#3 - Duplicate tool name

Issue - State: closed - Opened by rspreafico almost 6 years ago - 2 comments

#2 - bigwig and bed support?

Issue - State: closed - Opened by keoughkath almost 6 years ago - 9 comments

#1 - Stop coveralls from being picked up as a dependency

Pull Request - State: closed - Opened by rmsds almost 6 years ago

GitHub / biocore-ntnu/epic2 issues and pull requests