Ecosyste.ms: Issues

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GitHub / biocore/tax2tree issues and pull requests

#46 - Observed gaps introduced in GG2 2022.10

Issue - State: open - Opened by wasade 11 months ago

#44 - Better off target mechanism

Pull Request - State: closed - Opened by wasade over 1 year ago

#43 - Optionally save bootstraps

Pull Request - State: closed - Opened by wasade almost 2 years ago

#42 - secondary taxonomy, recovery, correct binomials

Pull Request - State: closed - Opened by wasade about 2 years ago

#41 - Method for correcting decorated taxonomy

Pull Request - State: closed - Opened by wasade over 2 years ago

#40 - compare input / decorated taxonomies

Pull Request - State: closed - Opened by wasade over 2 years ago

#39 - support for as tree, unexpectedly was removed

Pull Request - State: closed - Opened by wasade over 2 years ago

#38 - Comment out unused functionality, add docstring

Pull Request - State: closed - Opened by wasade over 2 years ago

#37 - automate pypi release

Pull Request - State: closed - Opened by wasade over 2 years ago

#36 - missed reference

Pull Request - State: closed - Opened by wasade over 2 years ago

#35 - fetch from tree

Pull Request - State: closed - Opened by wasade over 2 years ago

#34 - Off target root, promote to multifurcation, and support methods

Pull Request - State: closed - Opened by wasade over 2 years ago

#33 - Propagate

Pull Request - State: closed - Opened by wasade almost 3 years ago

#32 - pass a list not set of tips

Pull Request - State: closed - Opened by wasade almost 3 years ago

#31 - qiime2 plugin?

Issue - State: open - Opened by mortonjt over 3 years ago - 4 comments

#30 - Save fmeasures

Pull Request - State: closed - Opened by wasade almost 6 years ago

#29 - Py35

Pull Request - State: closed - Opened by sjanssen2 over 6 years ago - 3 comments

#28 - flake8 + skbio 0.4.2

Pull Request - State: closed - Opened by sjanssen2 over 6 years ago - 1 comment

#27 - modified the way assigning numbers for unique names

Pull Request - State: open - Opened by qiyunzhu over 6 years ago - 6 comments

#26 - Convert to Python 3

Issue - State: closed - Opened by mortonjt over 7 years ago - 1 comment

#25 - reroot should allow for using a subset of IDs

Issue - State: closed - Opened by wasade over 8 years ago - 1 comment

#24 - Re-decorating a tree decorated tree with support values

Issue - State: open - Opened by donovan-h-parks almost 9 years ago - 1 comment

#23 - Minor bug fixes and enhanced scikit-bio compliance

Pull Request - State: closed - Opened by donovan-h-parks almost 10 years ago - 3 comments

#22 - Bug fix in nlevel.min_tips() and improved compliance with scikit-bio 0.3.0.

Pull Request - State: closed - Opened by donovan-h-parks about 10 years ago - 1 comment

#21 - Doc update

Pull Request - State: closed - Opened by fangly about 10 years ago

#20 - Corrected script name

Pull Request - State: closed - Opened by fangly about 10 years ago

#19 - More information about releases

Issue - State: closed - Opened by fangly about 10 years ago - 3 comments

#18 - DOC/ENH: top level is now d__

Pull Request - State: closed - Opened by wasade about 10 years ago

#17 - Shift business

Pull Request - State: closed - Opened by wasade about 10 years ago

#16 - Automatically name unnamed groups

Issue - State: open - Opened by wasade about 10 years ago
Labels: enhancement

#15 - Optionally dump out f-measure scores for named internal nodes

Issue - State: open - Opened by wasade about 10 years ago

#14 - optionally disable backfilling (and report)

Issue - State: open - Opened by wasade about 10 years ago
Labels: enhancement

#13 - Skbio updates

Pull Request - State: closed - Opened by wasade over 10 years ago

#12 - First line of consensus map not parsed

Issue - State: open - Opened by donovan-h-parks over 10 years ago

#11 - BUG: RANK_ORDER not reset

Pull Request - State: open - Opened by wasade over 10 years ago

#10 - Consistency command

Pull Request - State: closed - Opened by donovan-h-parks over 10 years ago - 1 comment

#9 - Validate

Pull Request - State: closed - Opened by wasade over 10 years ago

#8 - Morecleanup

Pull Request - State: closed - Opened by wasade over 10 years ago

#7 - Remap

Pull Request - State: closed - Opened by wasade over 10 years ago

#6 - Click

Pull Request - State: closed - Opened by wasade over 10 years ago

#5 - To bsd

Pull Request - State: closed - Opened by wasade over 10 years ago - 13 comments

#4 - pep8 compliance

Issue - State: closed - Opened by wasade over 10 years ago - 1 comment

#3 - Support for pyqi

Issue - State: closed - Opened by wasade over 10 years ago - 1 comment

#2 - LICENSE IS FORCED GPL RIGHT NOW

Issue - State: closed - Opened by wasade over 10 years ago - 3 comments

#1 - make tax2tree pip-installable

Issue - State: open - Opened by jairideout almost 11 years ago
Labels: enhancement