Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / biocore/mmvec issues and pull requests
#180 - What's the threshod of p*n in the microbe and metabolite datasets?
Issue -
State: closed - Opened by 12Hanyue 29 days ago
- 4 comments
#179 - ValueError: 'a' cannot be empty unless no samples are taken
Issue -
State: open - Opened by Chauncy-Fang about 1 month ago
- 3 comments
#178 - Plugin error from mmvec: local variable 'rU' referenced before assignment
Issue -
State: closed - Opened by justinshaffer 7 months ago
#177 - Tensorflow-gpu is not found upon installation
Issue -
State: open - Opened by KDSpencer77 10 months ago
- 1 comment
#176 - Version compatibility issues
Issue -
State: closed - Opened by MOUTAI-Lee 10 months ago
- 2 comments
#175 - Compatibility issues on macbook pro with M1 chip
Issue -
State: open - Opened by mdoolin2014 about 1 year ago
- 4 comments
#174 - docs: specify abundance vs frequency
Issue -
State: closed - Opened by LenaFloerl over 1 year ago
- 1 comment
#173 - Different results
Issue -
State: closed - Opened by xmcr almost 2 years ago
- 4 comments
#172 - error: no such option: --o-model-stats
Issue -
State: closed - Opened by xmcr almost 2 years ago
- 10 comments
#171 - An qiime2 error has occurred
Issue -
State: closed - Opened by xmcr almost 2 years ago
- 5 comments
#170 - Plugin error from mmvec: index 0 is out of bounds for axis 0 with size 0
Issue -
State: open - Opened by mortonjt over 2 years ago
#169 - tensorflow.contrib
Issue -
State: closed - Opened by Ma-tengyu over 2 years ago
- 1 comment
Labels: wontfix
#168 - Pytorch refactor
Pull Request -
State: open - Opened by ebolyen over 2 years ago
- 2 comments
#167 - DRAFT: first draft of model
Pull Request -
State: closed - Opened by Keegan-Evans over 2 years ago
#166 - MMvec refactor
Issue -
State: open - Opened by mortonjt over 2 years ago
- 6 comments
#165 - Tips and Tricks to speed up training
Issue -
State: open - Opened by mortonjt over 2 years ago
#164 - Why 13 metabolites as ground truth in soil dataset?
Issue -
State: closed - Opened by wanglu2014 almost 3 years ago
- 2 comments
#163 - Could mmvec measure the consumption of metabolites?
Issue -
State: closed - Opened by wanglu2014 almost 3 years ago
- 1 comment
#162 - what is the role of example?
Issue -
State: closed - Opened by kechen1984 almost 3 years ago
- 4 comments
#161 - help with heatmap conditionals to create ranks.qza file
Issue -
State: closed - Opened by CarlaCristinaUranga over 3 years ago
- 1 comment
#160 - Minor fixes
Pull Request -
State: closed - Opened by gibsramen over 3 years ago
- 1 comment
#159 - Plugin error from mmvec
Issue -
State: closed - Opened by CarlaCristinaUranga over 3 years ago
- 14 comments
#158 - ranks with full taxonomic hierarqui rather than featureid
Issue -
State: closed - Opened by iratxezarra over 3 years ago
- 2 comments
#157 - Error: QIIME 2 has no plugin/command named 'mmvec'.
Issue -
State: closed - Opened by ssorgatem over 3 years ago
- 3 comments
#156 - heatmap change "--p-x-labels " size
Issue -
State: closed - Opened by iratxezarra over 3 years ago
- 3 comments
#155 - paired_omics error - 'arm_the_gpu'
Issue -
State: closed - Opened by lindsval over 3 years ago
- 5 comments
#154 - ranks.qza file for heatmap
Issue -
State: closed - Opened by MilouArts almost 4 years ago
- 7 comments
#153 - Error from biom table in wrong orientation and some manual suggestions
Issue -
State: closed - Opened by MilouArts almost 4 years ago
- 5 comments
#152 - Docs
Pull Request -
State: closed - Opened by mortonjt almost 4 years ago
#151 - Convergence stats
Pull Request -
State: closed - Opened by mortonjt almost 4 years ago
- 1 comment
#150 - Trouble running mmvec/Tensorflow
Issue -
State: closed - Opened by CarlaCristinaUranga almost 4 years ago
- 10 comments
#149 - Nan in summary histogram for: qUbias_1 (was also qUmain or qVmain)
Issue -
State: closed - Opened by tgroth97 almost 4 years ago
- 7 comments
#148 - Tensorflow numpy incompatible with Qiime 2020.8 (current version)
Issue -
State: closed - Opened by afvrbanac about 4 years ago
- 4 comments
#147 - Normality test for relative abundance data
Issue -
State: closed - Opened by khemlalnirmalkar about 4 years ago
- 4 comments
#146 - heatmap in svg format
Issue -
State: closed - Opened by khemlalnirmalkar about 4 years ago
- 3 comments
#145 - Upgrade pandas
Issue -
State: open - Opened by mortonjt about 4 years ago
#144 - Tensorboard only shows a single point
Issue -
State: open - Opened by mortonjt about 4 years ago
#143 - heatmap missing some in row and column
Issue -
State: closed - Opened by LiZhihua1982 about 4 years ago
- 1 comment
#142 - Error running with my data (a' cannot be empty)
Issue -
State: closed - Opened by amartinsan about 4 years ago
- 4 comments
#141 - heatmap-paired unable to find some features
Issue -
State: closed - Opened by mestaki about 4 years ago
- 5 comments
#140 - Update README.md
Pull Request -
State: closed - Opened by mestaki about 4 years ago
- 1 comment
#139 - Ensuring q2-plug-in ran correctly
Issue -
State: closed - Opened by BrandonDKayser about 4 years ago
- 4 comments
#138 - FIX: enabling batch size to be explicitly specified
Pull Request -
State: closed - Opened by mortonjt about 4 years ago
- 1 comment
#137 - doubt in generating a heatmap
Issue -
State: closed - Opened by khemlalnirmalkar over 4 years ago
- 4 comments
#136 - mmvec metagenomic full abundance table or sub-selected table
Issue -
State: open - Opened by luzhang321 over 4 years ago
- 1 comment
#135 - mmvec with shotgun metagenome+metabolome
Issue -
State: closed - Opened by khemlalnirmalkar over 4 years ago
- 43 comments
#134 - Exact parameters used in paper
Issue -
State: closed - Opened by isisannelie over 4 years ago
- 2 comments
#133 - Error in the paired-heatmap
Issue -
State: closed - Opened by helenamrusso over 4 years ago
- 4 comments
#132 - Suggestion for FAQ
Issue -
State: closed - Opened by KujawinskiLaboratory over 4 years ago
- 7 comments
#131 - Equalize vectors
Pull Request -
State: closed - Opened by mortonjt over 4 years ago
- 1 comment
#130 - This restricts pandas to 0.25.3 or older
Pull Request -
State: closed - Opened by mortonjt over 4 years ago
#129 - Throw error when iterations is too small
Issue -
State: open - Opened by mortonjt over 4 years ago
#128 - Input data format
Issue -
State: closed - Opened by TaylerChicoine over 4 years ago
- 4 comments
#127 - download example metadata
Issue -
State: closed - Opened by TaylerChicoine over 4 years ago
#126 - convert CF simulation data to biom
Issue -
State: closed - Opened by nzarnaghi over 4 years ago
- 1 comment
#125 - Error in running the example
Issue -
State: closed - Opened by nzarnaghi over 4 years ago
- 7 comments
#124 - How can I get the exact feature id and otu id in heatmap, correspondingly.
Issue -
State: closed - Opened by ChangkunLi2019 over 4 years ago
- 4 comments
#123 - Running an example
Issue -
State: closed - Opened by nzarnaghi over 4 years ago
- 5 comments
#122 - mmvec installation
Issue -
State: closed - Opened by nzarnaghi over 4 years ago
- 3 comments
#121 - BUG: paired-heatmap keep_top_samples option is broken
Issue -
State: open - Opened by nbokulich over 4 years ago
#120 - interpration of the outputs
Issue -
State: closed - Opened by maque4004 over 4 years ago
- 6 comments
#119 - Describe inputs in README
Pull Request -
State: closed - Opened by mstrazar over 4 years ago
- 2 comments
#118 - Describe input files
Pull Request -
State: closed - Opened by mstrazar over 4 years ago
#117 - Equalize singular vectors option in q2cli
Issue -
State: closed - Opened by mortonjt over 4 years ago
#116 - AttributeError: <class 'qiime2.core.type.grammar.UnionExp'> object has no attribute 'predicate'
Issue -
State: closed - Opened by maque4004 almost 5 years ago
- 13 comments
#115 - Equalize singular vectors of conditional probabilities
Pull Request -
State: closed - Opened by mstrazar almost 5 years ago
- 3 comments
#114 - Reproducing the example data (cystic fibrosis)
Issue -
State: closed - Opened by mstrazar almost 5 years ago
- 11 comments
#113 - Update min-feature-count argument
Issue -
State: open - Opened by mortonjt almost 5 years ago
#112 - BLD: pinning tensorflow version
Pull Request -
State: closed - Opened by mortonjt almost 5 years ago
#111 - Simplify delivery and interfacing
Issue -
State: open - Opened by mstrazar almost 5 years ago
- 5 comments
Labels: bug
#110 - Readme update
Pull Request -
State: closed - Opened by mortonjt almost 5 years ago
#109 - Raise error when passing in wrong files
Issue -
State: open - Opened by mortonjt almost 5 years ago
#108 - bug: paired-heatmap top-k-microbes fails when top microbes are not found in ranks
Issue -
State: open - Opened by nbokulich almost 5 years ago
#107 - Update to qiime 2019.10
Issue -
State: closed - Opened by mortonjt almost 5 years ago
#106 - fixing typo in readme
Pull Request -
State: closed - Opened by mortonjt almost 5 years ago
#105 - Dependency cap on TF
Pull Request -
State: closed - Opened by mortonjt almost 5 years ago
- 1 comment
#104 - Correcting typo
Pull Request -
State: closed - Opened by mortonjt almost 5 years ago
#103 - Error when running q2-mmvec paired-omics: 'rU' referenced before assignment
Issue -
State: closed - Opened by ADGM almost 5 years ago
- 20 comments
#102 - numpy 1.17 gives error/warning
Issue -
State: closed - Opened by marcomeola almost 5 years ago
- 4 comments
#101 - Adding --p-logging-dir option
Issue -
State: open - Opened by mortonjt almost 5 years ago
#100 - TST: fixing orientation of ranks in heatmaps
Pull Request -
State: closed - Opened by mortonjt almost 5 years ago
- 3 comments
#99 - FIX: transposing ranks for final output.
Pull Request -
State: closed - Opened by mortonjt almost 5 years ago
- 3 comments
#98 - Tutorial for viewing the ranks
Issue -
State: closed - Opened by mortonjt almost 5 years ago
#97 - Unable to install both in Qiime2 environments and as standalone
Issue -
State: closed - Opened by afvrbanac almost 5 years ago
- 16 comments
#96 - Need warning for cross validation
Issue -
State: open - Opened by mortonjt almost 5 years ago
#95 - Make filtering consistent between tables
Issue -
State: open - Opened by mortonjt almost 5 years ago
#94 - Enable simple hypothesis tests
Issue -
State: open - Opened by mortonjt almost 5 years ago
#93 - Enabling the download of raw conditional probabilities
Issue -
State: closed - Opened by mortonjt almost 5 years ago
- 2 comments
#92 - FIX: Fixing the ordering of the eigenvalues.
Pull Request -
State: closed - Opened by mortonjt about 5 years ago
- 1 comment
#91 - Fix missing asset (index.html)
Pull Request -
State: closed - Opened by ElDeveloper about 5 years ago
- 1 comment
#90 - missing index.html
Issue -
State: closed - Opened by cameronmartino about 5 years ago
- 4 comments
#89 - Heatmap tutorial
Pull Request -
State: closed - Opened by nbokulich about 5 years ago
#88 - removed conda installation instructions
Pull Request -
State: closed - Opened by setgree about 5 years ago
- 1 comment
#87 - Clean up branches
Issue -
State: open - Opened by mortonjt about 5 years ago
#86 - Proportion explained is out of order: axis 1 < axis 2 < axis 3
Issue -
State: closed - Opened by wasade about 5 years ago
- 3 comments
#85 - Obvious instability warnings
Issue -
State: closed - Opened by wasade about 5 years ago
- 4 comments
#83 - Update qiime2/GNPS tutorials
Issue -
State: open - Opened by mortonjt about 5 years ago
#81 - Version 1 action items
Issue -
State: open - Opened by mortonjt about 5 years ago
#79 - Error running on GPU: device renaming issue?
Issue -
State: open - Opened by FranckLejzerowicz about 5 years ago
- 2 comments
#75 - paired heatmaps
Pull Request -
State: closed - Opened by nbokulich about 5 years ago
- 20 comments