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GitHub / biocore/microsetta-public-api issues and pull requests

#99 - NEW check for sample/dataset existence

Pull Request - State: closed - Opened by gwarmstrong over 4 years ago

#97 - Connect rare unique

Pull Request - State: open - Opened by wasade over 4 years ago - 1 comment

#96 - Taxonomy bp tree to genus tree

Pull Request - State: closed - Opened by gwarmstrong over 4 years ago - 8 comments

#95 - Rare unique step2

Pull Request - State: closed - Opened by wasade over 4 years ago

#94 - TST/ENH: set sample counts for each taxon

Pull Request - State: closed - Opened by wasade over 4 years ago

#93 - FIX make encoding safe for numpy ints

Pull Request - State: closed - Opened by gwarmstrong over 4 years ago

#92 - Background loading in thread

Pull Request - State: closed - Opened by gwarmstrong over 4 years ago - 4 comments

#91 - FIX update empress version

Pull Request - State: closed - Opened by gwarmstrong over 4 years ago

#90 - Pin empress version to 1.1.0

Issue - State: closed - Opened by gwarmstrong over 4 years ago

#89 - taxa counts

Pull Request - State: closed - Opened by wasade over 4 years ago - 6 comments

#88 - Add load logging

Pull Request - State: closed - Opened by gwarmstrong over 4 years ago - 1 comment

#86 - Make metadata endpoints dataset specific

Pull Request - State: closed - Opened by gwarmstrong over 4 years ago - 9 comments

#85 - Results Page Taxonomy Aggregation

Issue - State: open - Opened by dhakim87 over 4 years ago

#84 - NEW Add empress for taxonomy

Pull Request - State: closed - Opened by gwarmstrong over 4 years ago - 5 comments

#83 - BUG: filtering ranks rather differently from the proof of concept

Pull Request - State: closed - Opened by wasade over 4 years ago

#82 - Creat an endpoint for serving `Empress` objects.

Issue - State: closed - Opened by gwarmstrong over 4 years ago

#80 - support phylogeny data type on the public API

Issue - State: open - Opened by gwarmstrong over 4 years ago

#79 - WIP: Metadata to datasets

Pull Request - State: closed - Opened by wasade over 4 years ago - 2 comments

#78 - Dataset detail

Pull Request - State: closed - Opened by wasade over 4 years ago

#77 - Revise error checking

Issue - State: open - Opened by wasade over 4 years ago

#76 - Include information on unique / rare taxa

Issue - State: open - Opened by wasade over 4 years ago

#75 - Add endpoint for obtaining number of taxa at a given level

Issue - State: open - Opened by wasade over 4 years ago

#74 - Closest neighbor matching criteria

Issue - State: open - Opened by gwarmstrong over 4 years ago - 2 comments

#73 - Initial rank support

Pull Request - State: closed - Opened by wasade over 4 years ago - 1 comment

#72 - Add endpoint for taxa ranks

Issue - State: open - Opened by wasade over 4 years ago - 6 comments

#71 - Support obtaining detail about a dataset

Issue - State: closed - Opened by wasade over 4 years ago - 1 comment

#70 - Allow taxonomy features to be superset of abundance table

Pull Request - State: closed - Opened by wasade over 4 years ago - 1 comment

#69 - Add k nearest api

Pull Request - State: closed - Opened by gwarmstrong almost 5 years ago

#68 - NEW add distance matrix backend

Pull Request - State: closed - Opened by gwarmstrong almost 5 years ago - 1 comment

#67 - NEW endpoint for querying metadata given sample ID's

Pull Request - State: closed - Opened by gwarmstrong almost 5 years ago

#66 - /metadata/sample_ids does not generalize to multiple datasets

Issue - State: open - Opened by gwarmstrong almost 5 years ago - 1 comment

#64 - Add Endpoint to query k closest samples to given sample

Issue - State: closed - Opened by gwarmstrong almost 5 years ago

#63 - List metadata available categories and available datasets

Pull Request - State: closed - Opened by gwarmstrong almost 5 years ago - 1 comment

#62 - Create endpoint to list available metadata categories

Issue - State: closed - Opened by gwarmstrong almost 5 years ago - 1 comment

#61 - Implement pcoa and alpha plotting for multiple datsets

Pull Request - State: closed - Opened by gwarmstrong almost 5 years ago

#60 - Taxonomy multiple datasets implementation

Pull Request - State: closed - Opened by gwarmstrong almost 5 years ago

#59 - Alpha and metadata implementation support for new config structure

Pull Request - State: closed - Opened by gwarmstrong almost 5 years ago - 3 comments

#58 - Named dataset endpoint

Pull Request - State: closed - Opened by gwarmstrong almost 5 years ago

#57 - Refactor config setup and loading

Pull Request - State: closed - Opened by gwarmstrong almost 5 years ago - 9 comments

#56 - Emperor: add fillna and require metadata categories

Pull Request - State: closed - Opened by gwarmstrong almost 5 years ago

#55 - BUG fix uncaught missing metric and fix TestDatabase start

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#54 - NEW add metadata query to alpha group

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#53 - Add emperor endpoint implementation

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#52 - Remove q2 metadata

Pull Request - State: closed - Opened by wasade about 5 years ago

#51 - Add alpha taxonomy 'exists' endpoint

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#50 - run indirection

Pull Request - State: closed - Opened by wasade about 5 years ago

#49 - Fix alpha plotting 404

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#48 - Update readme install and server port

Issue - State: open - Opened by gwarmstrong about 5 years ago

#47 - More closely mirror config handling for other microsetta- projects

Pull Request - State: closed - Opened by wasade about 5 years ago - 1 comment

#46 - Deploy tweaks

Pull Request - State: closed - Opened by wasade about 5 years ago

#45 - Adds CORS with flask-cors, you need this for local testing.

Pull Request - State: closed - Opened by dhakim87 about 5 years ago - 2 comments

#44 - /api -> /results-api

Pull Request - State: closed - Opened by wasade about 5 years ago

#43 - Use scipy.sparse on empty variance construction

Pull Request - State: closed - Opened by wasade about 5 years ago - 1 comment

#42 - Diagnose cause of slow server start on large datasets

Issue - State: closed - Opened by gwarmstrong about 5 years ago

#41 - Add alpha plotting from demo

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#40 - Add querybuilder metadata implementation

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago - 3 comments

#39 - Add exception handlers for common API errors

Issue - State: open - Opened by gwarmstrong about 5 years ago
Labels: maintenance

#38 - Explore extensibility of Voyager 2

Issue - State: open - Opened by gwarmstrong about 5 years ago
Labels: enhancement, open-ended

#37 - Add endpoints from initial interface demo

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#36 - Re-organize API/integration/implementation tests

Issue - State: open - Opened by gwarmstrong about 5 years ago

#35 - Jquery datable compatible taxonomy endpoint implementation

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#33 - API add datatable compatible endpoint for taxonomy

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#32 - UTIL adds a utility class for a randomizable test database

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago - 2 comments

#31 - Cache taxonomy model (optional, defaults to true, recommended for large datasets)

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago - 3 comments
Labels: enhancement

#30 - Fix metadata 500 error

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#29 - Set up database for logging job information

Issue - State: open - Opened by gwarmstrong about 5 years ago
Labels: enhancement

#28 - Capture timings of requests

Issue - State: open - Opened by gwarmstrong about 5 years ago - 6 comments
Labels: enhancement

#27 - New endpoint for Taxonomy API

Issue - State: closed - Opened by wasade about 5 years ago - 1 comment
Labels: enhancement

#26 - The Taxonomy model is initialized on each GET and it's very expensive

Issue - State: closed - Opened by wasade about 5 years ago - 3 comments
Labels: enhancement

#25 - 500 error

Issue - State: closed - Opened by wasade about 5 years ago - 5 comments
Labels: bug

#24 - Metadata category API returns a non-json object

Issue - State: closed - Opened by wasade about 5 years ago - 2 comments

#23 - Custom JSON encoder for nan and inf

Issue - State: open - Opened by gwarmstrong about 5 years ago

#21 - BUG filter na values from metadata category values

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago - 5 comments

#20 - NEW Taxonomy single sample

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago - 1 comment

#19 - Metadata filter sample ids by taxonomy and alpha

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#18 - FIX TST ensure server can be configured from JSON

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#17 - BUG add ability to ignore predicates in q2 type checking

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago - 1 comment

#16 - Metadata filter sample ids integration tests

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#15 - NEW add implementation for metadata API

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#14 - Metadata repo for age cat bmi queries

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago - 1 comment

#13 - Add metadata resources

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#12 - Add REST endpoints for filtering samples in metadata by age and BMI

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago - 2 comments

#11 - Taxonomy implementation

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#10 - Initial taxonomy api

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#9 - Expose alpha summary statistics

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago

#8 - Integration testing

Issue - State: closed - Opened by gwarmstrong about 5 years ago - 1 comment

#7 - Cache ID's in Alpha Repo

Issue - State: open - Opened by gwarmstrong about 5 years ago

#6 - WIP: Hook up alpha to qza

Pull Request - State: closed - Opened by gwarmstrong about 5 years ago - 3 comments

#5 - First draft of group alpha retrieval

Pull Request - State: closed - Opened by gwarmstrong over 5 years ago

#4 - Start using coveralls for coverage checking.

Issue - State: closed - Opened by gwarmstrong over 5 years ago

#3 - Single sample alpha implementation

Pull Request - State: closed - Opened by gwarmstrong over 5 years ago

#2 - Use warner/python-versioneer

Issue - State: closed - Opened by gwarmstrong over 5 years ago

#1 - Restructure based on microsetta private

Pull Request - State: closed - Opened by gwarmstrong over 5 years ago - 1 comment