biocore/empress issues and pull requests

#560 - McHelper QZV links don't load on q2view (expired certificate?)

Issue - State: closed - Opened by fedarko almost 2 years ago - 2 comments
Labels: logistics

#559 - Add option to overwrite files when directory exists

Pull Request - State: open - Opened by gibsramen about 2 years ago

#558 - Option to overwrite existing directory

Issue - State: open - Opened by gibsramen about 2 years ago - 4 comments
Labels: feature request, good first issue

#557 - Race condition / itermittent failure in one of the barplot tests

Issue - State: open - Opened by fedarko about 2 years ago
Labels: bug, testing

#556 - Support discretization as an alternative to continuous coloring

Issue - State: open - Opened by fedarko about 2 years ago
Labels: feature request, barplots

#555 - Document a few dependencies more clearly in the README, and also work on fixing the build

Pull Request - State: closed - Opened by fedarko about 2 years ago - 4 comments

#554 - Adding midpoint coloring

Issue - State: open - Opened by mortonjt over 2 years ago - 1 comment
Labels: feature request

#553 - Document dependence on binutils

Issue - State: closed - Opened by fedarko over 2 years ago
Labels: good first issue, documentation

#552 - Error installing Empress

Issue - State: closed - Opened by OliverAshton1 over 2 years ago - 3 comments
Labels: logistics

#551 - Allow settings import/export

Issue - State: open - Opened by jwdebelius over 2 years ago - 6 comments
Labels: feature request

#550 - Document dependence on Xcode for macOS systems

Issue - State: closed - Opened by fedarko over 2 years ago
Labels: good first issue, documentation

#549 - Trying to install using the comand in the instructions but get always the same error

Issue - State: closed - Opened by cortegas over 2 years ago - 6 comments
Labels: logistics

#548 - Adding info on feature metadata format in README

Issue - State: open - Opened by Robaina over 2 years ago - 3 comments
Labels: documentation

#547 - [WIP] Exploring a group of selected nodes by highlighting the path connecting them and providing tools to better compare their metadata.

Pull Request - State: open - Opened by kwcantrell almost 3 years ago - 8 comments

#546 - Add convenience method to empress.js that gets the 0-based index of a feature metadata column

Issue - State: open - Opened by fedarko almost 3 years ago
Labels: nice to have, good first issue, refactoring

#545 - sorted all menus

Pull Request - State: open - Opened by kwcantrell almost 3 years ago - 10 comments

#544 - Update setup.py PyPI classifiers

Pull Request - State: closed - Opened by fedarko almost 3 years ago - 3 comments

#543 - DOC: Small README tidying

Pull Request - State: closed - Opened by fedarko almost 3 years ago - 2 comments

#542 - Possible for Empress tree coloring to break when using timed events in Empire plots

Issue - State: open - Opened by fedarko almost 3 years ago
Labels: bug, emperor-integration

#541 - changed control to empress-control

Pull Request - State: closed - Opened by ghost almost 3 years ago - 3 comments

#540 - Use a more specific class name than 'control' in Empress' CSS

Issue - State: closed - Opened by fedarko almost 3 years ago - 2 comments
Labels: good first issue, refactoring

#539 - Allow explicitly passing data to make-dev-page.py without including feature metadata

Pull Request - State: closed - Opened by fedarko almost 3 years ago - 4 comments

#538 - TST: fix spacing (?) in main.yml file re: McHelper

Pull Request - State: closed - Opened by fedarko almost 3 years ago - 3 comments

#537 - 🐧🚑 add mchelper back to GitHub actions

Pull Request - State: closed - Opened by ElDeveloper almost 3 years ago - 2 comments

#536 - REL: bump version to 1.2.0-dev

Pull Request - State: closed - Opened by fedarko almost 3 years ago

#535 - Bump version number to v1.2.0 for release; update README screenshots and text

Pull Request - State: closed - Opened by fedarko almost 3 years ago

#534 - Continue legend overflow on new line

Issue - State: open - Opened by kwcantrell almost 3 years ago - 1 comment
Labels: feature request

#533 - Don't resize legend when changing non-color-related things?

Issue - State: open - Opened by fedarko almost 3 years ago
Labels: feature request

#532 - Need to un-hide "Update" buttons when enabling sample / feature metadata coloring tabs after finishing an animation

Issue - State: open - Opened by fedarko almost 3 years ago
Labels: bug

#531 - Error when running with greengenes taxonomy files, integer ID field causes type issue

Issue - State: open - Opened by mstapylton almost 3 years ago - 4 comments
Labels: bug

#530 - added flag to make-dev-page so that only tree plot is created

Pull Request - State: closed - Opened by kwcantrell almost 3 years ago - 3 comments

#529 - set the min, middle, max value of the colorbar

Issue - State: open - Opened by maque4004 about 3 years ago - 2 comments
Labels: feature request

#528 - Length legends' SVG exporting logic doesn't account for long titles

Issue - State: open - Opened by fedarko about 3 years ago
Labels: bug, barplots

#527 - BUG: Draw node circles as needed in SVG export

Pull Request - State: closed - Opened by fedarko about 3 years ago - 1 comment

#526 - Inconsistent state after barplot errors

Issue - State: open - Opened by fedarko about 3 years ago - 2 comments
Labels: bug, barplots

#525 - Improves error handling when "shear" but no metadata passed

Pull Request - State: closed - Opened by ChrisKeefe about 3 years ago - 2 comments

#524 - Separate McHelper into a separate GitHub action from the Main CI

Issue - State: open - Opened by fedarko about 3 years ago
Labels: nice to have, good first issue, logistics

#523 - commented out McHelper temporarily

Pull Request - State: closed - Opened by kwcantrell about 3 years ago

#522 - updated the error message for missing features

Pull Request - State: closed - Opened by ericap258 about 3 years ago - 5 comments

#521 - [WIP] select min/max of color gradient

Pull Request - State: open - Opened by kwcantrell about 3 years ago - 28 comments

#520 - Standalone raises incorrect parameter error

Issue - State: closed - Opened by ericap258 about 3 years ago - 1 comment
Labels: bug

#519 - Use toastr to support showing multiple toast messages at once, with a fancy UI

Pull Request - State: closed - Opened by fedarko about 3 years ago - 4 comments

#518 - Center diverging colormaps at 0

Issue - State: open - Opened by jwdebelius about 3 years ago - 3 comments
Labels: feature request

#517 - McHelper is failing to connect

Issue - State: closed - Opened by kwcantrell about 3 years ago - 4 comments
Labels: bug, logistics

#516 - throttled onwheel event

Pull Request - State: closed - Opened by kwcantrell about 3 years ago - 4 comments

#515 - Fix resizing in main legend when coloring tree by feature metadata gradient with non-numeric warning message

Issue - State: open - Opened by fedarko about 3 years ago
Labels: bug, nice to have, good first issue

#514 - Small side panel formatting fix: hide button <p> containers instead of buttons; fix prev/next frame animation buttons

Pull Request - State: closed - Opened by fedarko about 3 years ago - 4 comments

#513 - Replace high-level <p> tags with <div>

Issue - State: open - Opened by fedarko about 3 years ago
Labels: bug

#512 - Automatically resize main legend when changing tree coloring

Pull Request - State: closed - Opened by fedarko about 3 years ago - 2 comments

#511 - Feature metadata is being dropped

Issue - State: closed - Opened by mortonjt about 3 years ago - 5 comments
Labels: question

#510 - Add node count per metadata category.

Issue - State: open - Opened by ElDeveloper about 3 years ago - 2 comments
Labels: feature request

#509 - Support adjusting end angle of circular layout

Issue - State: open - Opened by fedarko about 3 years ago - 2 comments
Labels: feature request, nice to have, good first issue

#508 - Use smoother curves to draw circular layout barplots for trees with only a few tips

Issue - State: open - Opened by fedarko over 3 years ago
Labels: bug

#507 - Update README to use snazzy new GitHub menu

Pull Request - State: closed - Opened by gibsramen over 3 years ago - 3 comments
Labels: documentation

#506 - Enable stacked barplots for feature metadata

Issue - State: open - Opened by FranckLejzerowicz over 3 years ago - 3 comments
Labels: feature request, barplots

#505 - Shear UI

Pull Request - State: closed - Opened by kwcantrell over 3 years ago - 17 comments

#504 - [WIP] Barplot clicking

Pull Request - State: open - Opened by fedarko over 3 years ago - 1 comment

#503 - Show text labels alongside tips

Issue - State: open - Opened by neptuneyt over 3 years ago - 4 comments
Labels: feature request

#502 - BLD: Small tweaks to GH Actions workflows

Pull Request - State: closed - Opened by fedarko over 3 years ago - 2 comments

#501 - Get Tree Tip Label by Rectangular Layout

Issue - State: closed - Opened by neptuneyt over 3 years ago - 3 comments

#500 - Add simple standalone example data

Issue - State: open - Opened by fedarko over 3 years ago - 1 comment
Labels: good first issue, documentation

#499 - Creates new GitHub Action for standalone testing

Pull Request - State: closed - Opened by gibsramen over 3 years ago - 1 comment

#498 - TST: Trying to bring back mchelper 🐧

Pull Request - State: closed - Opened by ElDeveloper over 3 years ago - 4 comments

#497 - TST: Trying to bring back mchelper 🐧

Pull Request - State: closed - Opened by ElDeveloper over 3 years ago - 1 comment

#496 - Explicitly test standalone installation / tests in the CI

Issue - State: closed - Opened by fedarko over 3 years ago - 2 comments
Labels: good first issue, testing

#495 - Fix bug with running standalone version; account for NumPy dependency in standalone install instructions; a few small changes w/r/t node circle options

Pull Request - State: closed - Opened by fedarko over 3 years ago - 1 comment

GitHub / biocore/empress issues and pull requests