biocore/emp issues and pull requests

#35 - load 10k data files

Issue - State: closed - Opened by gregcaporaso almost 11 years ago - 2 comments

#34 - Qiime meta-analysis file download issues

Issue - State: closed - Opened by alexdthomas over 11 years ago - 5 comments

#33 - Added sample novelty results for public tables.

Pull Request - State: closed - Opened by jairideout over 11 years ago

#32 - Added novel_samples.py script and tests.

Pull Request - State: closed - Opened by jairideout over 11 years ago - 1 comment

#31 - abundance figure

Issue - State: open - Opened by lsbrueck over 12 years ago - 6 comments
Labels: analysis

#30 - otu table 940 has file size 0

Issue - State: closed - Opened by gregcaporaso over 12 years ago - 1 comment
Labels: problem

#29 - compute observed species for all otu tables

Issue - State: closed - Opened by gregcaporaso over 12 years ago - 4 comments

#28 - load final reference sequence collection to github

Issue - State: closed - Opened by gregcaporaso over 12 years ago - 1 comment

#27 - alignment and OTU tree

Issue - State: open - Opened by gregcaporaso over 12 years ago - 2 comments
Labels: analysis

#26 - taxonomy assignment on all 'new OTUs'

Issue - State: open - Opened by gregcaporaso over 12 years ago - 2 comments
Labels: analysis

#25 - merge per-study OTU tables to single master OTU table and post to GitHub

Issue - State: closed - Opened by gregcaporaso over 12 years ago - 1 comment
Labels: problem, in progress

#24 - compile mapping file for all samples

Issue - State: closed - Opened by gregcaporaso over 12 years ago - 9 comments

#23 - 100 most wanted list

Issue - State: open - Opened by gregcaporaso over 12 years ago - 31 comments
Labels: analysis

#22 - Update on metadata and completed studies in database.

Issue - State: closed - Opened by ackermag over 12 years ago - 4 comments
Labels: question

#21 - Find host-associated studies to include in analysis

Issue - State: closed - Opened by ackermag over 12 years ago - 2 comments

#20 - Estimates of total # taxa in each environment

Issue - State: closed - Opened by rob-knight over 12 years ago - 1 comment

#19 - this is a test: you should get email notification of this issue

Issue - State: closed - Opened by gregcaporaso over 12 years ago

#18 - Guide to evaluating studies/metadata in the database

Issue - State: open - Opened by rob-knight over 12 years ago - 2 comments

#17 - Fix metadata for the studies that still don't have it, or delete those studies

Issue - State: closed - Opened by rob-knight over 12 years ago - 18 comments

#16 - Identify good examples of studies to compare driving factors

Issue - State: open - Opened by rob-knight over 12 years ago - 2 comments
Labels: analysis

#15 - compile list of EMP samples that will be included in this study

Issue - State: closed - Opened by gregcaporaso over 12 years ago - 2 comments
Labels: question

#14 - are there any shared OTUs between all ecosystems surveyed

Issue - State: open - Opened by gregcaporaso over 12 years ago - 13 comments
Labels: analysis

#13 - visualization of the environmental parameters gradients

Issue - State: closed - Opened by gregcaporaso over 12 years ago - 35 comments
Labels: analysis

#12 - comparing spatial and temporal scales

Issue - State: open - Opened by gregcaporaso over 12 years ago - 1 comment
Labels: question

#11 - search for additional support for rare taxa across environments

Issue - State: open - Opened by gregcaporaso over 12 years ago
Labels: analysis

#10 - variance within biomes (alpha diversity, beta diversity)

Issue - State: closed - Opened by gregcaporaso over 12 years ago - 3 comments
Labels: analysis

#9 - update of 'places to look for new diversity' plot

Issue - State: closed - Opened by gregcaporaso over 12 years ago - 17 comments
Labels: analysis

#8 - update of alpha diversity by sample type plots

Issue - State: closed - Opened by gregcaporaso over 12 years ago - 28 comments
Labels: analysis

#7 - animated PCoA of the specific timeseries we have within the context of full PCoA plot

Issue - State: open - Opened by gregcaporaso over 12 years ago - 4 comments
Labels: analysis

#6 - Inventory of samples pledged, received, processed, and released (including examples of projects)

Issue - State: open - Opened by gregcaporaso over 12 years ago - 6 comments

#5 - Chart showing # samples and fraction of samples by sample type (we had discussed adding this display to the front page and keeping it updated)

Issue - State: closed - Opened by gregcaporaso over 12 years ago - 37 comments
Labels: analysis

#4 - greengenes coverage tree: how much of greengenes is covered by samples, and how much does EMP add to greengenes?

Issue - State: closed - Opened by gregcaporaso over 12 years ago - 19 comments
Labels: analysis

#3 - PCoA plot of all samples

Issue - State: closed - Opened by gregcaporaso over 12 years ago - 3 comments
Labels: analysis, problem

#2 - map of the earth containing location of all samples (and sub-maps colored by sample site)

Issue - State: closed - Opened by gregcaporaso over 12 years ago - 39 comments
Labels: analysis

#1 - build open-reference OTU tables for commit to github

Issue - State: closed - Opened by gregcaporaso over 12 years ago - 5 comments
Labels: in progress

Ecosyste.ms: Issues

GitHub / biocore/emp issues and pull requests