Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / biocore/emp issues and pull requests

#133 - Availability of data for the multi-omics analyses on the EMP500

Issue - State: open - Opened by S-Delattre 10 months ago - 3 comments

#132 - Opening emp_cr_silva_16S_123.qc_filtered.biom in R

Issue - State: closed - Opened by padpadpadpad over 1 year ago - 1 comment

#131 - Opening emp_cr_silva_16S_123.qc_filtered.biom in R

Issue - State: closed - Opened by padpadpadpad over 1 year ago - 5 comments

#130 - 16 EMP - Adaptor timming

Issue - State: open - Opened by fconstancias almost 2 years ago - 1 comment

#129 - Updating EMP500 methods to include 18S and ITS processing updates

Pull Request - State: closed - Opened by justinshaffer about 2 years ago - 5 comments

#128 - EMP500 update 20220610

Pull Request - State: closed - Opened by justinshaffer over 2 years ago

#126 - FTP username and password?

Issue - State: closed - Opened by dkoslicki about 3 years ago - 2 comments

#125 - updated URLs to remove "www." from "earthmicrobiome.org"

Pull Request - State: closed - Opened by cuttlefishh over 3 years ago

#124 - Broken links on website and no "www." redirect

Issue - State: open - Opened by lukenoaa over 3 years ago - 5 comments

#123 - Release 2.1 for metabolomics

Pull Request - State: closed - Opened by lfnothias over 3 years ago - 1 comment

#122 - What kind of data was used in deblur?

Issue - State: open - Opened by YulinzhangSia almost 4 years ago - 1 comment

#121 - Updated front page

Pull Request - State: closed - Opened by justinshaffer almost 4 years ago

#120 - Update README.md

Pull Request - State: closed - Opened by justinshaffer almost 4 years ago

#119 - Update README.md

Pull Request - State: closed - Opened by justinshaffer almost 4 years ago

#118 - Update README.md

Pull Request - State: closed - Opened by justinshaffer almost 4 years ago

#117 - Update README.md

Pull Request - State: closed - Opened by justinshaffer almost 4 years ago

#116 - Update metabolomics annotation

Pull Request - State: closed - Opened by lfnothias over 4 years ago

#115 - 18s data availability?

Issue - State: open - Opened by anna-schrecengost over 4 years ago - 8 comments

#112 - First draft of metabolomics data / protocol and methods

Pull Request - State: closed - Opened by lfnothias about 5 years ago

#111 - Raw data retrieval - We are currently updating the system. Thank you!

Issue - State: closed - Opened by jjkoehorst over 5 years ago - 2 comments

#110 - taxons with empo habitats

Issue - State: open - Opened by marctormo over 5 years ago - 2 comments

#109 - buying or printing trading cards

Issue - State: open - Opened by agt24 over 5 years ago - 2 comments

#108 - Updates to README files

Pull Request - State: closed - Opened by cuttlefishh almost 6 years ago

#107 - updates to READMEs

Pull Request - State: closed - Opened by cuttlefishh about 6 years ago

#106 - reorganizing READMEs

Pull Request - State: closed - Opened by cuttlefishh over 6 years ago

#105 - fixing links in READMEs

Pull Request - State: closed - Opened by cuttlefishh over 6 years ago

#104 - Platinum Hot Start versus Q5 Hot Start Hifi PCR kits

Issue - State: open - Opened by tarunaaggarwal over 6 years ago - 2 comments

#103 - Updating and reorganizing repo for EMP500/Release 2

Pull Request - State: closed - Opened by cuttlefishh over 6 years ago - 1 comment

#102 - Question: fastaq for release 1

Issue - State: open - Opened by galud27 almost 7 years ago - 3 comments

#101 - renaming `figures` directory to `methods`

Pull Request - State: closed - Opened by cuttlefishh almost 7 years ago

#100 - added hex colors for all empo colors

Pull Request - State: closed - Opened by cuttlefishh almost 7 years ago

#99 - changing http to https

Pull Request - State: closed - Opened by fandemonium about 7 years ago

#98 - http no longer works. change http to https

Pull Request - State: closed - Opened by fandemonium about 7 years ago - 3 comments

#97 - readme

Pull Request - State: closed - Opened by cuttlefishh about 7 years ago

#96 - readme

Pull Request - State: closed - Opened by cuttlefishh about 7 years ago

#95 - added link to article

Pull Request - State: closed - Opened by cuttlefishh about 7 years ago

#94 - emp preprint

Pull Request - State: closed - Opened by cuttlefishh about 7 years ago

#93 - ftp and notebook edits

Pull Request - State: closed - Opened by cuttlefishh about 7 years ago

#92 - Website (http://www.earthmicrobiome.org) hyperlinks broken

Issue - State: closed - Opened by adswafford about 7 years ago - 3 comments

#91 - references to meta-analysis

Pull Request - State: closed - Opened by cuttlefishh about 7 years ago

#90 - added zenodo doi

Pull Request - State: closed - Opened by cuttlefishh about 7 years ago

#89 - minor edits

Pull Request - State: closed - Opened by cuttlefishh about 7 years ago

#88 - 2 commits, no changes

Pull Request - State: closed - Opened by cuttlefishh about 7 years ago

#87 - minor edits

Pull Request - State: closed - Opened by cuttlefishh about 7 years ago

#86 - minor edits

Pull Request - State: closed - Opened by cuttlefishh about 7 years ago

#85 - added DOI for manuscript

Pull Request - State: closed - Opened by cuttlefishh about 7 years ago

#83 - minor updates before publication

Pull Request - State: closed - Opened by cuttlefishh about 7 years ago

#82 - Manuscript

Pull Request - State: closed - Opened by cuttlefishh about 7 years ago

#81 - major overhaul to main README.md

Pull Request - State: closed - Opened by cuttlefishh over 7 years ago - 1 comment

#80 - updated ftp address

Pull Request - State: closed - Opened by cuttlefishh over 7 years ago - 2 comments

#79 - raw data not available

Issue - State: closed - Opened by rrohwer over 7 years ago - 6 comments

#77 - updates to README files

Pull Request - State: closed - Opened by cuttlefishh over 7 years ago - 2 comments

#76 - Adding more code for EMP manuscript submission

Pull Request - State: closed - Opened by cuttlefishh over 7 years ago - 3 comments

#75 - updating scripts subdirectory and README.md file

Pull Request - State: closed - Opened by cuttlefishh over 7 years ago

#74 - Notebooks for EMP Nature submission

Pull Request - State: closed - Opened by cuttlefishh over 7 years ago - 3 comments

#73 - Added ipynb for comparison with ref dbs

Pull Request - State: closed - Opened by tanaes almost 8 years ago - 1 comment

#72 - add sepp script

Pull Request - State: closed - Opened by smirarab almost 8 years ago

#71 - v2: compile sequence/OTU statistics

Pull Request - State: closed - Opened by sjanssen2 about 8 years ago - 1 comment

#71 - v2: compile sequence/OTU statistics

Pull Request - State: closed - Opened by sjanssen2 about 8 years ago - 1 comment

#70 - Notebooks for EMP 25k paper

Pull Request - State: closed - Opened by cuttlefishh about 8 years ago - 3 comments

#69 - new directory structure & notebooks

Pull Request - State: closed - Opened by cuttlefishh about 8 years ago - 1 comment

#68 - discrepancy in 806rB reverse primer sequence

Issue - State: closed - Opened by thwilkinson about 8 years ago - 11 comments

#67 - compute alpha diversity using scikit bio

Pull Request - State: closed - Opened by ekopylova about 8 years ago - 12 comments

#66 - NBs for creating sub-sets, filtering to a sub-set and counting observations

Pull Request - State: closed - Opened by sjanssen2 over 8 years ago - 1 comment

#65 - filter files for sub-sets

Pull Request - State: closed - Opened by sjanssen2 over 8 years ago - 3 comments

#64 - Moving emp20k_metadata_refine notebook from my repo to biocore

Pull Request - State: closed - Opened by cuttlefishh over 8 years ago - 8 comments

#64 - Moving emp20k_metadata_refine notebook from my repo to biocore

Pull Request - State: closed - Opened by cuttlefishh over 8 years ago - 8 comments

#63 - Added a notebook for sub-sampling the EMP samples.

Pull Request - State: closed - Opened by sjanssen2 over 8 years ago - 7 comments

#62 - adding 2 emp metadata notebooks for code review

Pull Request - State: closed - Opened by cuttlefishh over 8 years ago

#61 - random forests classifier

Issue - State: open - Opened by cuttlefishh over 8 years ago

#60 - total number of OTUs

Issue - State: closed - Opened by cuttlefishh over 8 years ago - 4 comments

#59 - Sequences dropped by split libraries

Issue - State: open - Opened by antgonza over 8 years ago

#58 - compile sequence/OTU statistics

Pull Request - State: closed - Opened by sjanssen2 over 8 years ago - 4 comments

#57 - database difference scripts

Pull Request - State: closed - Opened by ekopylova over 8 years ago - 1 comment

#56 - reformat members.md so it's easier to check

Pull Request - State: closed - Opened by colinbrislawn over 8 years ago - 7 comments

#55 - Update emp-laboratories.md

Pull Request - State: closed - Opened by colinbrislawn over 8 years ago - 2 comments

#54 - WIP: Fix documentation

Pull Request - State: closed - Opened by josenavas over 8 years ago - 9 comments

#53 - updates to EMP website

Pull Request - State: closed - Opened by colinbrislawn over 8 years ago - 1 comment

#52 - Markdown versions of EMP webpages for collaborative edit

Pull Request - State: closed - Opened by cuttlefishh over 8 years ago - 1 comment

#51 - website: Affiliations, Publications, Meetings, Logo

Issue - State: closed - Opened by cuttlefishh over 8 years ago - 5 comments

#50 - website: EMP Protocols and Standards

Issue - State: closed - Opened by cuttlefishh over 8 years ago - 5 comments

#49 - website: Getting Involved

Issue - State: closed - Opened by cuttlefishh over 8 years ago - 2 comments

#48 - website: Defining the Tasks

Issue - State: open - Opened by cuttlefishh over 8 years ago - 2 comments

#47 - Post and improve SOPs

Issue - State: closed - Opened by colinbrislawn almost 9 years ago - 14 comments

#46 - 16S reference database effects

Issue - State: closed - Opened by cuttlefishh almost 9 years ago - 11 comments
Labels: analysis

#45 - primer effects before/after introduction of new primers

Issue - State: open - Opened by cuttlefishh almost 9 years ago - 6 comments
Labels: analysis

#44 - similarity between biomes or sample types

Issue - State: open - Opened by cuttlefishh almost 9 years ago - 1 comment
Labels: analysis

#43 - update data URLs

Issue - State: closed - Opened by cuttlefishh almost 9 years ago - 1 comment

#42 - Script and data to generate metadata templates for EMP

Pull Request - State: closed - Opened by cuttlefishh almost 9 years ago - 18 comments

#41 - Slides

Pull Request - State: closed - Opened by cuttlefishh almost 9 years ago

#40 - driving factors of interest

Issue - State: open - Opened by cuttlefishh almost 9 years ago
Labels: analysis

#39 - blooming taxa analysis

Issue - State: open - Opened by cuttlefishh almost 9 years ago - 15 comments
Labels: analysis

#38 - global modeling

Issue - State: open - Opened by cuttlefishh almost 9 years ago
Labels: analysis

#37 - Link to publicly available slides on Google Drive

Pull Request - State: closed - Opened by cuttlefishh almost 9 years ago

#36 - Updating URLs

Pull Request - State: closed - Opened by josenavas almost 10 years ago - 9 comments