Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / biocore/emp issues and pull requests
#133 - Availability of data for the multi-omics analyses on the EMP500
Issue -
State: open - Opened by S-Delattre 10 months ago
- 3 comments
#132 - Opening emp_cr_silva_16S_123.qc_filtered.biom in R
Issue -
State: closed - Opened by padpadpadpad over 1 year ago
- 1 comment
#131 - Opening emp_cr_silva_16S_123.qc_filtered.biom in R
Issue -
State: closed - Opened by padpadpadpad over 1 year ago
- 5 comments
#130 - 16 EMP - Adaptor timming
Issue -
State: open - Opened by fconstancias almost 2 years ago
- 1 comment
#129 - Updating EMP500 methods to include 18S and ITS processing updates
Pull Request -
State: closed - Opened by justinshaffer about 2 years ago
- 5 comments
#128 - EMP500 update 20220610
Pull Request -
State: closed - Opened by justinshaffer over 2 years ago
#127 - Issue with parsing 16S amplicon data (summarize_otu_distributions.py) from biom table exported from Qiime2
Issue -
State: closed - Opened by dinhe878 about 3 years ago
- 1 comment
#126 - FTP username and password?
Issue -
State: closed - Opened by dkoslicki about 3 years ago
- 2 comments
#125 - updated URLs to remove "www." from "earthmicrobiome.org"
Pull Request -
State: closed - Opened by cuttlefishh over 3 years ago
#124 - Broken links on website and no "www." redirect
Issue -
State: open - Opened by lukenoaa over 3 years ago
- 5 comments
#123 - Release 2.1 for metabolomics
Pull Request -
State: closed - Opened by lfnothias over 3 years ago
- 1 comment
#122 - What kind of data was used in deblur?
Issue -
State: open - Opened by YulinzhangSia almost 4 years ago
- 1 comment
#121 - Updated front page
Pull Request -
State: closed - Opened by justinshaffer almost 4 years ago
#120 - Update README.md
Pull Request -
State: closed - Opened by justinshaffer almost 4 years ago
#119 - Update README.md
Pull Request -
State: closed - Opened by justinshaffer almost 4 years ago
#118 - Update README.md
Pull Request -
State: closed - Opened by justinshaffer almost 4 years ago
#117 - Update README.md
Pull Request -
State: closed - Opened by justinshaffer almost 4 years ago
#116 - Update metabolomics annotation
Pull Request -
State: closed - Opened by lfnothias over 4 years ago
#115 - 18s data availability?
Issue -
State: open - Opened by anna-schrecengost over 4 years ago
- 8 comments
#114 - Searching for one specific genus of interest using 16S rRNA data
Issue -
State: open - Opened by tmai18 over 4 years ago
#113 - updates to methods incl. EBI sample accessions mapped to Qiita/EMP sample names
Pull Request -
State: closed - Opened by cuttlefishh almost 5 years ago
#112 - First draft of metabolomics data / protocol and methods
Pull Request -
State: closed - Opened by lfnothias about 5 years ago
#111 - Raw data retrieval - We are currently updating the system. Thank you!
Issue -
State: closed - Opened by jjkoehorst over 5 years ago
- 2 comments
#110 - taxons with empo habitats
Issue -
State: open - Opened by marctormo over 5 years ago
- 2 comments
#109 - buying or printing trading cards
Issue -
State: open - Opened by agt24 over 5 years ago
- 2 comments
#108 - Updates to README files
Pull Request -
State: closed - Opened by cuttlefishh almost 6 years ago
#107 - updates to READMEs
Pull Request -
State: closed - Opened by cuttlefishh about 6 years ago
#106 - reorganizing READMEs
Pull Request -
State: closed - Opened by cuttlefishh over 6 years ago
#105 - fixing links in READMEs
Pull Request -
State: closed - Opened by cuttlefishh over 6 years ago
#104 - Platinum Hot Start versus Q5 Hot Start Hifi PCR kits
Issue -
State: open - Opened by tarunaaggarwal over 6 years ago
- 2 comments
#103 - Updating and reorganizing repo for EMP500/Release 2
Pull Request -
State: closed - Opened by cuttlefishh over 6 years ago
- 1 comment
#102 - Question: fastaq for release 1
Issue -
State: open - Opened by galud27 almost 7 years ago
- 3 comments
#101 - renaming `figures` directory to `methods`
Pull Request -
State: closed - Opened by cuttlefishh almost 7 years ago
#100 - added hex colors for all empo colors
Pull Request -
State: closed - Opened by cuttlefishh almost 7 years ago
#99 - changing http to https
Pull Request -
State: closed - Opened by fandemonium about 7 years ago
#98 - http no longer works. change http to https
Pull Request -
State: closed - Opened by fandemonium about 7 years ago
- 3 comments
#97 - readme
Pull Request -
State: closed - Opened by cuttlefishh about 7 years ago
#96 - readme
Pull Request -
State: closed - Opened by cuttlefishh about 7 years ago
#95 - added link to article
Pull Request -
State: closed - Opened by cuttlefishh about 7 years ago
#94 - emp preprint
Pull Request -
State: closed - Opened by cuttlefishh about 7 years ago
#93 - ftp and notebook edits
Pull Request -
State: closed - Opened by cuttlefishh about 7 years ago
#92 - Website (http://www.earthmicrobiome.org) hyperlinks broken
Issue -
State: closed - Opened by adswafford about 7 years ago
- 3 comments
#91 - references to meta-analysis
Pull Request -
State: closed - Opened by cuttlefishh about 7 years ago
#90 - added zenodo doi
Pull Request -
State: closed - Opened by cuttlefishh about 7 years ago
#89 - minor edits
Pull Request -
State: closed - Opened by cuttlefishh about 7 years ago
#88 - 2 commits, no changes
Pull Request -
State: closed - Opened by cuttlefishh about 7 years ago
#87 - minor edits
Pull Request -
State: closed - Opened by cuttlefishh about 7 years ago
#86 - minor edits
Pull Request -
State: closed - Opened by cuttlefishh about 7 years ago
#85 - added DOI for manuscript
Pull Request -
State: closed - Opened by cuttlefishh about 7 years ago
#84 - add QIIME2 initial processing instructions to the EMP website
Issue -
State: open - Opened by cuttlefishh about 7 years ago
#83 - minor updates before publication
Pull Request -
State: closed - Opened by cuttlefishh about 7 years ago
#82 - Manuscript
Pull Request -
State: closed - Opened by cuttlefishh about 7 years ago
#81 - major overhaul to main README.md
Pull Request -
State: closed - Opened by cuttlefishh over 7 years ago
- 1 comment
#80 - updated ftp address
Pull Request -
State: closed - Opened by cuttlefishh over 7 years ago
- 2 comments
#79 - raw data not available
Issue -
State: closed - Opened by rrohwer over 7 years ago
- 6 comments
#78 - Adding Golay seqs to 16S reverse primers for dual barcoding
Issue -
State: closed - Opened by tarunaaggarwal over 7 years ago
#77 - updates to README files
Pull Request -
State: closed - Opened by cuttlefishh over 7 years ago
- 2 comments
#76 - Adding more code for EMP manuscript submission
Pull Request -
State: closed - Opened by cuttlefishh over 7 years ago
- 3 comments
#75 - updating scripts subdirectory and README.md file
Pull Request -
State: closed - Opened by cuttlefishh over 7 years ago
#74 - Notebooks for EMP Nature submission
Pull Request -
State: closed - Opened by cuttlefishh over 7 years ago
- 3 comments
#73 - Added ipynb for comparison with ref dbs
Pull Request -
State: closed - Opened by tanaes almost 8 years ago
- 1 comment
#72 - add sepp script
Pull Request -
State: closed - Opened by smirarab almost 8 years ago
#71 - v2: compile sequence/OTU statistics
Pull Request -
State: closed - Opened by sjanssen2 about 8 years ago
- 1 comment
#71 - v2: compile sequence/OTU statistics
Pull Request -
State: closed - Opened by sjanssen2 about 8 years ago
- 1 comment
#70 - Notebooks for EMP 25k paper
Pull Request -
State: closed - Opened by cuttlefishh about 8 years ago
- 3 comments
#69 - new directory structure & notebooks
Pull Request -
State: closed - Opened by cuttlefishh about 8 years ago
- 1 comment
#68 - discrepancy in 806rB reverse primer sequence
Issue -
State: closed - Opened by thwilkinson about 8 years ago
- 11 comments
#67 - compute alpha diversity using scikit bio
Pull Request -
State: closed - Opened by ekopylova about 8 years ago
- 12 comments
#66 - NBs for creating sub-sets, filtering to a sub-set and counting observations
Pull Request -
State: closed - Opened by sjanssen2 over 8 years ago
- 1 comment
#65 - filter files for sub-sets
Pull Request -
State: closed - Opened by sjanssen2 over 8 years ago
- 3 comments
#64 - Moving emp20k_metadata_refine notebook from my repo to biocore
Pull Request -
State: closed - Opened by cuttlefishh over 8 years ago
- 8 comments
#64 - Moving emp20k_metadata_refine notebook from my repo to biocore
Pull Request -
State: closed - Opened by cuttlefishh over 8 years ago
- 8 comments
#63 - Added a notebook for sub-sampling the EMP samples.
Pull Request -
State: closed - Opened by sjanssen2 over 8 years ago
- 7 comments
#62 - adding 2 emp metadata notebooks for code review
Pull Request -
State: closed - Opened by cuttlefishh over 8 years ago
#61 - random forests classifier
Issue -
State: open - Opened by cuttlefishh over 8 years ago
#60 - total number of OTUs
Issue -
State: closed - Opened by cuttlefishh over 8 years ago
- 4 comments
#59 - Sequences dropped by split libraries
Issue -
State: open - Opened by antgonza over 8 years ago
#58 - compile sequence/OTU statistics
Pull Request -
State: closed - Opened by sjanssen2 over 8 years ago
- 4 comments
#57 - database difference scripts
Pull Request -
State: closed - Opened by ekopylova over 8 years ago
- 1 comment
#56 - reformat members.md so it's easier to check
Pull Request -
State: closed - Opened by colinbrislawn over 8 years ago
- 7 comments
#55 - Update emp-laboratories.md
Pull Request -
State: closed - Opened by colinbrislawn over 8 years ago
- 2 comments
#54 - WIP: Fix documentation
Pull Request -
State: closed - Opened by josenavas over 8 years ago
- 9 comments
#53 - updates to EMP website
Pull Request -
State: closed - Opened by colinbrislawn over 8 years ago
- 1 comment
#52 - Markdown versions of EMP webpages for collaborative edit
Pull Request -
State: closed - Opened by cuttlefishh over 8 years ago
- 1 comment
#51 - website: Affiliations, Publications, Meetings, Logo
Issue -
State: closed - Opened by cuttlefishh over 8 years ago
- 5 comments
#50 - website: EMP Protocols and Standards
Issue -
State: closed - Opened by cuttlefishh over 8 years ago
- 5 comments
#49 - website: Getting Involved
Issue -
State: closed - Opened by cuttlefishh over 8 years ago
- 2 comments
#48 - website: Defining the Tasks
Issue -
State: open - Opened by cuttlefishh over 8 years ago
- 2 comments
#47 - Post and improve SOPs
Issue -
State: closed - Opened by colinbrislawn almost 9 years ago
- 14 comments
#46 - 16S reference database effects
Issue -
State: closed - Opened by cuttlefishh almost 9 years ago
- 11 comments
Labels: analysis
#45 - primer effects before/after introduction of new primers
Issue -
State: open - Opened by cuttlefishh almost 9 years ago
- 6 comments
Labels: analysis
#44 - similarity between biomes or sample types
Issue -
State: open - Opened by cuttlefishh almost 9 years ago
- 1 comment
Labels: analysis
#43 - update data URLs
Issue -
State: closed - Opened by cuttlefishh almost 9 years ago
- 1 comment
#42 - Script and data to generate metadata templates for EMP
Pull Request -
State: closed - Opened by cuttlefishh almost 9 years ago
- 18 comments
#41 - Slides
Pull Request -
State: closed - Opened by cuttlefishh almost 9 years ago
#40 - driving factors of interest
Issue -
State: open - Opened by cuttlefishh almost 9 years ago
Labels: analysis
#39 - blooming taxa analysis
Issue -
State: open - Opened by cuttlefishh almost 9 years ago
- 15 comments
Labels: analysis
#38 - global modeling
Issue -
State: open - Opened by cuttlefishh almost 9 years ago
Labels: analysis
#37 - Link to publicly available slides on Google Drive
Pull Request -
State: closed - Opened by cuttlefishh almost 9 years ago
#36 - Updating URLs
Pull Request -
State: closed - Opened by josenavas almost 10 years ago
- 9 comments