Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / biocore/american-gut issues and pull requests

#165 - 4 prepare metaanalyses

Pull Request - State: closed - Opened by wasade about 9 years ago - 7 comments

#165 - 4 prepare metaanalyses

Pull Request - State: closed - Opened by wasade about 9 years ago - 7 comments

#164 - pick the otus

Pull Request - State: closed - Opened by wasade about 9 years ago - 4 comments

#164 - pick the otus

Pull Request - State: closed - Opened by wasade about 9 years ago - 4 comments

#163 - filter sequences for blooms

Pull Request - State: closed - Opened by wasade about 9 years ago - 5 comments

#163 - filter sequences for blooms

Pull Request - State: closed - Opened by wasade about 9 years ago - 5 comments

#162 - 1 get sequences and metadata

Pull Request - State: closed - Opened by wasade about 9 years ago - 7 comments

#162 - 1 get sequences and metadata

Pull Request - State: closed - Opened by wasade about 9 years ago - 7 comments

#161 - Primary processing revitalized

Issue - State: closed - Opened by wasade about 9 years ago - 1 comment

#161 - Primary processing revitalized

Issue - State: closed - Opened by wasade about 9 years ago - 1 comment

#160 - WIP: Preprocessing revitalized

Pull Request - State: closed - Opened by wasade about 9 years ago - 18 comments

#160 - WIP: Preprocessing revitalized

Pull Request - State: closed - Opened by wasade about 9 years ago - 18 comments

#159 - Metadata clean up

Pull Request - State: closed - Opened by mortonjt about 9 years ago - 1 comment

#159 - Metadata clean up

Pull Request - State: closed - Opened by mortonjt about 9 years ago - 1 comment

#158 - metaclean

Pull Request - State: closed - Opened by mortonjt about 9 years ago

#158 - metaclean

Pull Request - State: closed - Opened by mortonjt about 9 years ago

#157 - metadata clean

Pull Request - State: closed - Opened by mortonjt about 9 years ago

#157 - metadata clean

Pull Request - State: closed - Opened by mortonjt about 9 years ago

#156 - Subsample mod2

Pull Request - State: closed - Opened by wasade about 9 years ago - 3 comments

#156 - Subsample mod2

Pull Request - State: closed - Opened by wasade about 9 years ago - 3 comments

#155 - Subsampled figure2

Pull Request - State: closed - Opened by wasade about 9 years ago - 1 comment

#155 - Subsampled figure2

Pull Request - State: closed - Opened by wasade about 9 years ago - 1 comment

#154 - Dump sample - accession mappings, and update for r1-15

Pull Request - State: closed - Opened by wasade over 9 years ago - 2 comments

#154 - Dump sample - accession mappings, and update for r1-15

Pull Request - State: closed - Opened by wasade over 9 years ago - 2 comments

#153 - Skin/oral new pcoas

Pull Request - State: closed - Opened by cuttlefishh over 9 years ago

#153 - Skin/oral new pcoas

Pull Request - State: closed - Opened by cuttlefishh over 9 years ago

#152 - ENH: output, specify samples, file prefixes

Pull Request - State: closed - Opened by wasade over 9 years ago - 4 comments

#152 - ENH: output, specify samples, file prefixes

Pull Request - State: closed - Opened by wasade over 9 years ago - 4 comments

#151 - Re-adding taxonomy

Pull Request - State: closed - Opened by wasade over 9 years ago - 2 comments

#151 - Re-adding taxonomy

Pull Request - State: closed - Opened by wasade over 9 years ago - 2 comments

#150 - All new PCoAs and legends for bottom half of Module 2 report, includi…

Pull Request - State: closed - Opened by cuttlefishh over 9 years ago - 41 comments

#150 - All new PCoAs and legends for bottom half of Module 2 report, includi…

Pull Request - State: closed - Opened by cuttlefishh over 9 years ago - 41 comments

#149 - Adding data dictionary

Pull Request - State: closed - Opened by wasade over 9 years ago - 4 comments

#149 - Adding data dictionary

Pull Request - State: closed - Opened by wasade over 9 years ago - 4 comments

#148 - Creates a contributing.md document

Pull Request - State: open - Opened by jwdebelius over 9 years ago - 17 comments

#147 - We need a contributing.md document

Issue - State: open - Opened by jwdebelius over 9 years ago

#147 - We need a contributing.md document

Issue - State: open - Opened by jwdebelius over 9 years ago

#146 - Mislabeled metadata

Issue - State: closed - Opened by mortonjt over 9 years ago - 2 comments

#146 - Mislabeled metadata

Issue - State: closed - Opened by mortonjt over 9 years ago - 2 comments

#145 - Cannot import biom file in R

Issue - State: closed - Opened by arcys over 9 years ago - 7 comments

#145 - Cannot import biom file in R

Issue - State: closed - Opened by arcys over 9 years ago - 7 comments

#144 - Picrust

Pull Request - State: closed - Opened by mortonjt over 9 years ago - 14 comments

#144 - Picrust

Pull Request - State: closed - Opened by mortonjt over 9 years ago - 14 comments

#143 - r1-15 data

Pull Request - State: closed - Opened by wasade over 9 years ago - 4 comments

#143 - r1-15 data

Pull Request - State: closed - Opened by wasade over 9 years ago - 4 comments

#142 - Gradient legend maker

Pull Request - State: closed - Opened by wasade over 9 years ago - 1 comment

#142 - Gradient legend maker

Pull Request - State: closed - Opened by wasade over 9 years ago - 1 comment

#141 - HMP table does not have taxonomy

Issue - State: closed - Opened by wasade over 9 years ago - 1 comment

#141 - HMP table does not have taxonomy

Issue - State: closed - Opened by wasade over 9 years ago - 1 comment

#140 - Updates table of contents and downloads

Pull Request - State: closed - Opened by jwdebelius over 9 years ago - 3 comments

#140 - Updates table of contents and downloads

Pull Request - State: closed - Opened by jwdebelius over 9 years ago - 3 comments

#139 - Add .travis.yml

Pull Request - State: closed - Opened by adamrp over 9 years ago - 9 comments

#139 - Add .travis.yml

Pull Request - State: closed - Opened by adamrp over 9 years ago - 9 comments

#138 - Add Travis CI

Issue - State: closed - Opened by adamrp over 9 years ago
Labels: enhancement

#138 - Add Travis CI

Issue - State: closed - Opened by adamrp over 9 years ago
Labels: enhancement

#137 - Jsonized taxonomy results

Pull Request - State: closed - Opened by wasade over 9 years ago - 5 comments

#137 - Jsonized taxonomy results

Pull Request - State: closed - Opened by wasade over 9 years ago - 5 comments

#136 - Updating shared_otus notebook...

Pull Request - State: closed - Opened by josenavas over 9 years ago - 8 comments

#136 - Updating shared_otus notebook...

Pull Request - State: closed - Opened by josenavas over 9 years ago - 8 comments

#135 - The shared_otus ipynb tries to download a file that no longer exists

Issue - State: closed - Opened by josenavas over 9 years ago - 1 comment

#135 - The shared_otus ipynb tries to download a file that no longer exists

Issue - State: closed - Opened by josenavas over 9 years ago - 1 comment

#131 - Add zeroes to barcodes in mapping files

Pull Request - State: closed - Opened by adamrp over 9 years ago - 5 comments

#131 - Add zeroes to barcodes in mapping files

Pull Request - State: closed - Opened by adamrp over 9 years ago - 5 comments

#128 - Easy template

Pull Request - State: closed - Opened by jwdebelius almost 10 years ago - 2 comments

#128 - Easy template

Pull Request - State: closed - Opened by jwdebelius almost 10 years ago - 2 comments

#126 - Preprocessing notebook

Pull Request - State: closed - Opened by jwdebelius almost 10 years ago - 15 comments
Labels: results

#126 - Preprocessing notebook

Pull Request - State: closed - Opened by jwdebelius almost 10 years ago - 15 comments
Labels: results

#118 - Processing Notebooks

Issue - State: closed - Opened by jwdebelius about 10 years ago - 1 comment
Labels: enhancement, results, python-code

#118 - Processing Notebooks

Issue - State: closed - Opened by jwdebelius about 10 years ago - 1 comment
Labels: enhancement, results, python-code

#72 - Add additional stats to taxonomy summary

Issue - State: closed - Opened by wasade over 10 years ago - 1 comment

#72 - Add additional stats to taxonomy summary

Issue - State: closed - Opened by wasade over 10 years ago - 1 comment

#71 - test_select_gamma.py fails with ImportError

Issue - State: closed - Opened by ElDeveloper over 10 years ago - 1 comment
Labels: bug, python-code

#71 - test_select_gamma.py fails with ImportError

Issue - State: closed - Opened by ElDeveloper over 10 years ago - 1 comment
Labels: bug, python-code

#68 - Generate ovals dynamically from PCoA data

Issue - State: closed - Opened by cuttlefishh over 10 years ago - 1 comment

#68 - Generate ovals dynamically from PCoA data

Issue - State: closed - Opened by cuttlefishh over 10 years ago - 1 comment

#65 - generate_otu_significance_tables

Issue - State: closed - Opened by wasade over 10 years ago - 1 comment

#65 - generate_otu_significance_tables

Issue - State: closed - Opened by wasade over 10 years ago - 1 comment

#63 - FloatingPointError in generate_otu_signficance_table.py

Issue - State: closed - Opened by wasade over 10 years ago - 1 comment

#63 - FloatingPointError in generate_otu_signficance_table.py

Issue - State: closed - Opened by wasade over 10 years ago - 1 comment

#61 - Add notebook to create module 1

Issue - State: open - Opened by ElDeveloper over 10 years ago - 1 comment
Labels: results

#61 - Add notebook to create module 1

Issue - State: open - Opened by ElDeveloper over 10 years ago - 1 comment
Labels: results

#60 - Use un-rarefied OTU table

Issue - State: closed - Opened by ElDeveloper almost 11 years ago - 26 comments
Labels: question

#60 - Use un-rarefied OTU table

Issue - State: closed - Opened by ElDeveloper almost 11 years ago - 26 comments
Labels: question

#58 - Move ipynb/cluster_utils.py to a new repo

Issue - State: open - Opened by josenavas almost 11 years ago - 2 comments
Labels: python-code

#56 - Remove any commas from participant's name before creating \yourname{} macro

Issue - State: closed - Opened by cuttlefishh almost 11 years ago - 6 comments
Labels: bug

#56 - Remove any commas from participant's name before creating \yourname{} macro

Issue - State: closed - Opened by cuttlefishh almost 11 years ago - 6 comments
Labels: bug

#54 - Improve description of how the OTU tables were created

Issue - State: closed - Opened by wasade almost 11 years ago - 1 comment
Labels: results

#54 - Improve description of how the OTU tables were created

Issue - State: closed - Opened by wasade almost 11 years ago - 1 comment
Labels: results

#51 - Contested taxonomy groups should not necessarily show up as rare/unique

Issue - State: closed - Opened by wasade almost 11 years ago - 4 comments
Labels: python-code

#51 - Contested taxonomy groups should not necessarily show up as rare/unique

Issue - State: closed - Opened by wasade almost 11 years ago - 4 comments
Labels: python-code

#41 - Template does not include barcode

Issue - State: closed - Opened by adamrp about 11 years ago - 4 comments
Labels: bug, enhancement

#41 - Template does not include barcode

Issue - State: closed - Opened by adamrp about 11 years ago - 4 comments
Labels: bug, enhancement