Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / biocore/DEICODE issues and pull requests
#65 - segmentation fault
Issue -
State: open - Opened by nvpatin about 2 years ago
- 12 comments
#64 - Update readme with update for future of package
Pull Request -
State: closed - Opened by cameronmartino about 2 years ago
#63 - update branch
Pull Request -
State: closed - Opened by cameronmartino about 2 years ago
#62 - DEICODE Package for R Programming Language
Issue -
State: open - Opened by erfanshekarriz almost 3 years ago
- 1 comment
#61 - converting otu_table.csv format to otu_table.qza
Issue -
State: open - Opened by Hesham999666 about 3 years ago
- 1 comment
#60 - Still having issue with arrow bias in biplot
Issue -
State: open - Opened by manasson about 4 years ago
- 1 comment
#59 - Produce robust clr matrix as output.
Pull Request -
State: open - Opened by davised over 4 years ago
- 6 comments
#58 - add paper citation
Issue -
State: open - Opened by gwarmstrong over 4 years ago
#57 - Does DEICODE meet the assumption of same "multivariate spread" among groups for PERMANOVA?
Issue -
State: open - Opened by Jigyasa3 over 4 years ago
- 1 comment
#56 - arrows appear to be biased?
Issue -
State: closed - Opened by scher-lab over 4 years ago
- 4 comments
#55 - autorpca returns a column full of zeros
Issue -
State: closed - Opened by mortonjt over 4 years ago
- 2 comments
#54 - bug fixes in ordering and fraction total variance explained
Pull Request -
State: closed - Opened by cameronmartino over 4 years ago
- 5 comments
#53 - fraction variance explained.
Issue -
State: closed - Opened by cameronmartino over 4 years ago
- 1 comment
Labels: enhancement
#52 - "variation of interest" seems to be split across axis 2 instead of axis 1, as expected?
Issue -
State: closed - Opened by fedarko almost 5 years ago
- 4 comments
#51 - collapse the deicode distance matrix back into feature tables before rpca function?
Issue -
State: open - Opened by Jigyasa3 almost 5 years ago
- 1 comment
#50 - Is there a recommended value for "--min-sample" count and "--min-feature" count?
Issue -
State: closed - Opened by Jigyasa3 almost 5 years ago
- 5 comments
#49 - Error-k must be between 1 and min(A.shape). What is k?
Issue -
State: closed - Opened by Jigyasa3 almost 5 years ago
- 2 comments
#48 - pip install and setup.py doesn't install DEICODE on computing cluster
Issue -
State: closed - Opened by Jigyasa3 almost 5 years ago
- 4 comments
#47 - Applying it on shot-gun metagenome data without microbial phylogeny info
Issue -
State: closed - Opened by Jigyasa3 almost 5 years ago
- 10 comments
#46 - How to use OptSpace function in Python? No fit_transform method
Issue -
State: open - Opened by jolespin almost 5 years ago
- 6 comments
#45 - Add frequency filter.
Issue -
State: closed - Opened by cameronmartino almost 5 years ago
- 1 comment
Labels: enhancement
#44 - changing matplotlib backend
Pull Request -
State: closed - Opened by mortonjt almost 5 years ago
- 3 comments
#43 - Typo in tutorial
Pull Request -
State: closed - Opened by mortonjt almost 5 years ago
#42 - Add version check in command line
Issue -
State: open - Opened by cameronmartino about 5 years ago
- 1 comment
Labels: enhancement
#41 - Make docs consistent re: default/min parameters
Pull Request -
State: open - Opened by fedarko about 5 years ago
- 2 comments
#40 - Update the tutorial output with the changes made in PR #36 & #38.
Pull Request -
State: closed - Opened by cameronmartino about 5 years ago
- 1 comment
#39 - Add emperor mchelper with CF data
Issue -
State: open - Opened by cameronmartino over 5 years ago
Labels: enhancement
#38 - Fixes the centering issue
Pull Request -
State: closed - Opened by mortonjt over 5 years ago
- 8 comments
#37 - The centering issue remains
Issue -
State: closed - Opened by mortonjt over 5 years ago
- 3 comments
#36 - Adding tests, documentation, arrow scaling issue
Pull Request -
State: closed - Opened by cameronmartino over 5 years ago
- 4 comments
#35 - Fix a docstring in the Q2 test code
Pull Request -
State: closed - Opened by fedarko over 5 years ago
#34 - Sorting eigenvalues and accompanying tests
Pull Request -
State: closed - Opened by cameronmartino over 5 years ago
- 3 comments
#33 - fix eigenvalues order issue
Pull Request -
State: closed - Opened by cameronmartino over 5 years ago
- 1 comment
#32 - proportion explained / eigenvalues are swapped
Issue -
State: closed - Opened by mortonjt over 5 years ago
- 2 comments
Labels: bug
#31 - update matrix handling to scipy 2-D sparse
Issue -
State: open - Opened by cameronmartino over 5 years ago
Labels: enhancement
#30 - Maximum recursion depth exceeded
Issue -
State: closed - Opened by justinshaffer over 5 years ago
- 5 comments
#29 - Refactor redundant code between standalone and QIIME 2 RPCA methods
Pull Request -
State: closed - Opened by fedarko over 5 years ago
- 18 comments
#28 - Duplicated Scripts
Issue -
State: closed - Opened by cameronmartino over 5 years ago
Labels: enhancement
#27 - Center biplot
Pull Request -
State: closed - Opened by cameronmartino over 5 years ago
- 4 comments
#26 - Biplot arrows not completely centered
Issue -
State: closed - Opened by mortonjt over 5 years ago
- 1 comment
#25 - Fix broken links
Pull Request -
State: closed - Opened by cameronmartino over 5 years ago
- 2 comments
#24 - broken image links in tutorial
Issue -
State: closed - Opened by mestaki over 5 years ago
- 1 comment
Labels: bug
#23 - Change tutorial dataset to "moving pictures"
Pull Request -
State: closed - Opened by cameronmartino over 5 years ago
- 1 comment
Labels: enhancement
#22 - QIIME error
Pull Request -
State: closed - Opened by cameronmartino over 5 years ago
- 2 comments
Labels: bug
#21 - Update tutorials and add distance
Pull Request -
State: closed - Opened by cameronmartino over 5 years ago
- 2 comments
Labels: enhancement
#20 - conda install in qiime2-2018.11
Issue -
State: closed - Opened by cameronmartino over 5 years ago
- 4 comments
Labels: bug
#19 - Update readme
Pull Request -
State: closed - Opened by cameronmartino over 5 years ago
#18 - Cleanup
Pull Request -
State: closed - Opened by cameronmartino over 5 years ago
#17 - Fixing setup file from base env
Pull Request -
State: closed - Opened by cameronmartino over 5 years ago
- 1 comment
#16 - bootstrap numpy for skbio install, add biom-format/h5py
Issue -
State: closed - Opened by cameronmartino over 5 years ago
#15 - update q2 plugin perams
Pull Request -
State: closed - Opened by cameronmartino over 5 years ago
- 1 comment
Labels: enhancement
#14 - Update README.md
Pull Request -
State: closed - Opened by justinshaffer almost 6 years ago
- 2 comments
#13 - resolves #11
Pull Request -
State: closed - Opened by cameronmartino almost 6 years ago
#12 - iteration option
Issue -
State: closed - Opened by cameronmartino almost 6 years ago
Labels: enhancement
#11 - Flag for matrix where features >> samples
Issue -
State: closed - Opened by cameronmartino almost 6 years ago
- 2 comments
Labels: enhancement
#10 - [Question] When would you recommend using OptSpace or rclr over clr?
Issue -
State: closed - Opened by jolespin almost 6 years ago
- 3 comments
#9 - Update SleepApnea-python-tutorial.ipynb
Pull Request -
State: closed - Opened by lisa55asil almost 6 years ago
- 2 comments
#8 - DOC: Adding in conceptual example
Pull Request -
State: closed - Opened by mortonjt about 6 years ago
#7 - Time to clean
Pull Request -
State: closed - Opened by cameronmartino about 6 years ago
- 4 comments
#6 - Adding in ILR PCA
Pull Request -
State: closed - Opened by mortonjt over 6 years ago
#5 - Add license scan report and status
Pull Request -
State: closed - Opened by fossabot about 7 years ago
- 1 comment
#4 - Optspace for compositional data
Pull Request -
State: closed - Opened by mortonjt about 7 years ago
#3 - WIP: Adding in modified optspace algorithm
Pull Request -
State: closed - Opened by mortonjt about 7 years ago
#2 - Fixing leastsq resolution
Pull Request -
State: closed - Opened by mortonjt about 7 years ago
#1 - Optspace implementation
Pull Request -
State: closed - Opened by mortonjt about 7 years ago