Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / biocore/DEICODE issues and pull requests

#65 - segmentation fault

Issue - State: open - Opened by nvpatin about 2 years ago - 12 comments

#64 - Update readme with update for future of package

Pull Request - State: closed - Opened by cameronmartino about 2 years ago

#63 - update branch

Pull Request - State: closed - Opened by cameronmartino about 2 years ago

#62 - DEICODE Package for R Programming Language

Issue - State: open - Opened by erfanshekarriz almost 3 years ago - 1 comment

#61 - converting otu_table.csv format to otu_table.qza

Issue - State: open - Opened by Hesham999666 about 3 years ago - 1 comment

#60 - Still having issue with arrow bias in biplot

Issue - State: open - Opened by manasson about 4 years ago - 1 comment

#59 - Produce robust clr matrix as output.

Pull Request - State: open - Opened by davised over 4 years ago - 6 comments

#58 - add paper citation

Issue - State: open - Opened by gwarmstrong over 4 years ago

#56 - arrows appear to be biased?

Issue - State: closed - Opened by scher-lab over 4 years ago - 4 comments

#55 - autorpca returns a column full of zeros

Issue - State: closed - Opened by mortonjt over 4 years ago - 2 comments

#54 - bug fixes in ordering and fraction total variance explained

Pull Request - State: closed - Opened by cameronmartino over 4 years ago - 5 comments

#53 - fraction variance explained.

Issue - State: closed - Opened by cameronmartino over 4 years ago - 1 comment
Labels: enhancement

#50 - Is there a recommended value for "--min-sample" count and "--min-feature" count?

Issue - State: closed - Opened by Jigyasa3 almost 5 years ago - 5 comments

#49 - Error-k must be between 1 and min(A.shape). What is k?

Issue - State: closed - Opened by Jigyasa3 almost 5 years ago - 2 comments

#48 - pip install and setup.py doesn't install DEICODE on computing cluster

Issue - State: closed - Opened by Jigyasa3 almost 5 years ago - 4 comments

#47 - Applying it on shot-gun metagenome data without microbial phylogeny info

Issue - State: closed - Opened by Jigyasa3 almost 5 years ago - 10 comments

#46 - How to use OptSpace function in Python? No fit_transform method

Issue - State: open - Opened by jolespin almost 5 years ago - 6 comments

#45 - Add frequency filter.

Issue - State: closed - Opened by cameronmartino almost 5 years ago - 1 comment
Labels: enhancement

#44 - changing matplotlib backend

Pull Request - State: closed - Opened by mortonjt almost 5 years ago - 3 comments

#43 - Typo in tutorial

Pull Request - State: closed - Opened by mortonjt almost 5 years ago

#42 - Add version check in command line

Issue - State: open - Opened by cameronmartino about 5 years ago - 1 comment
Labels: enhancement

#41 - Make docs consistent re: default/min parameters

Pull Request - State: open - Opened by fedarko about 5 years ago - 2 comments

#40 - Update the tutorial output with the changes made in PR #36 & #38.

Pull Request - State: closed - Opened by cameronmartino about 5 years ago - 1 comment

#39 - Add emperor mchelper with CF data

Issue - State: open - Opened by cameronmartino over 5 years ago
Labels: enhancement

#38 - Fixes the centering issue

Pull Request - State: closed - Opened by mortonjt over 5 years ago - 8 comments

#37 - The centering issue remains

Issue - State: closed - Opened by mortonjt over 5 years ago - 3 comments

#36 - Adding tests, documentation, arrow scaling issue

Pull Request - State: closed - Opened by cameronmartino over 5 years ago - 4 comments

#35 - Fix a docstring in the Q2 test code

Pull Request - State: closed - Opened by fedarko over 5 years ago

#34 - Sorting eigenvalues and accompanying tests

Pull Request - State: closed - Opened by cameronmartino over 5 years ago - 3 comments

#33 - fix eigenvalues order issue

Pull Request - State: closed - Opened by cameronmartino over 5 years ago - 1 comment

#32 - proportion explained / eigenvalues are swapped

Issue - State: closed - Opened by mortonjt over 5 years ago - 2 comments
Labels: bug

#31 - update matrix handling to scipy 2-D sparse

Issue - State: open - Opened by cameronmartino over 5 years ago
Labels: enhancement

#30 - Maximum recursion depth exceeded

Issue - State: closed - Opened by justinshaffer over 5 years ago - 5 comments

#29 - Refactor redundant code between standalone and QIIME 2 RPCA methods

Pull Request - State: closed - Opened by fedarko over 5 years ago - 18 comments

#28 - Duplicated Scripts

Issue - State: closed - Opened by cameronmartino over 5 years ago
Labels: enhancement

#27 - Center biplot

Pull Request - State: closed - Opened by cameronmartino over 5 years ago - 4 comments

#26 - Biplot arrows not completely centered

Issue - State: closed - Opened by mortonjt over 5 years ago - 1 comment

#25 - Fix broken links

Pull Request - State: closed - Opened by cameronmartino over 5 years ago - 2 comments

#24 - broken image links in tutorial

Issue - State: closed - Opened by mestaki over 5 years ago - 1 comment
Labels: bug

#23 - Change tutorial dataset to "moving pictures"

Pull Request - State: closed - Opened by cameronmartino over 5 years ago - 1 comment
Labels: enhancement

#22 - QIIME error

Pull Request - State: closed - Opened by cameronmartino over 5 years ago - 2 comments
Labels: bug

#21 - Update tutorials and add distance

Pull Request - State: closed - Opened by cameronmartino over 5 years ago - 2 comments
Labels: enhancement

#20 - conda install in qiime2-2018.11

Issue - State: closed - Opened by cameronmartino over 5 years ago - 4 comments
Labels: bug

#19 - Update readme

Pull Request - State: closed - Opened by cameronmartino over 5 years ago

#18 - Cleanup

Pull Request - State: closed - Opened by cameronmartino over 5 years ago

#17 - Fixing setup file from base env

Pull Request - State: closed - Opened by cameronmartino over 5 years ago - 1 comment

#16 - bootstrap numpy for skbio install, add biom-format/h5py

Issue - State: closed - Opened by cameronmartino over 5 years ago

#15 - update q2 plugin perams

Pull Request - State: closed - Opened by cameronmartino over 5 years ago - 1 comment
Labels: enhancement

#14 - Update README.md

Pull Request - State: closed - Opened by justinshaffer almost 6 years ago - 2 comments

#13 - resolves #11

Pull Request - State: closed - Opened by cameronmartino almost 6 years ago

#12 - iteration option

Issue - State: closed - Opened by cameronmartino almost 6 years ago
Labels: enhancement

#11 - Flag for matrix where features >> samples

Issue - State: closed - Opened by cameronmartino almost 6 years ago - 2 comments
Labels: enhancement

#10 - [Question] When would you recommend using OptSpace or rclr over clr?

Issue - State: closed - Opened by jolespin almost 6 years ago - 3 comments

#9 - Update SleepApnea-python-tutorial.ipynb

Pull Request - State: closed - Opened by lisa55asil almost 6 years ago - 2 comments

#8 - DOC: Adding in conceptual example

Pull Request - State: closed - Opened by mortonjt about 6 years ago

#7 - Time to clean

Pull Request - State: closed - Opened by cameronmartino about 6 years ago - 4 comments

#6 - Adding in ILR PCA

Pull Request - State: closed - Opened by mortonjt over 6 years ago

#5 - Add license scan report and status

Pull Request - State: closed - Opened by fossabot about 7 years ago - 1 comment

#4 - Optspace for compositional data

Pull Request - State: closed - Opened by mortonjt about 7 years ago

#3 - WIP: Adding in modified optspace algorithm

Pull Request - State: closed - Opened by mortonjt about 7 years ago

#2 - Fixing leastsq resolution

Pull Request - State: closed - Opened by mortonjt about 7 years ago

#1 - Optspace implementation

Pull Request - State: closed - Opened by mortonjt about 7 years ago