biocontainers/specs issues and pull requests

#106 - MAINTAINER instruction is deprecated

Issue - State: closed - Opened by marrip over 2 years ago

#105 - Add labels to BioContainers made from Bioconda packages

Issue - State: open - Opened by RenskeW almost 3 years ago - 1 comment
Labels: Request

#104 - Tag most recent container with truncated version

Issue - State: open - Opened by innovate-invent about 4 years ago

#103 - sandbox link on specs main page broken

Issue - State: closed - Opened by rsettlage about 4 years ago - 2 comments

#102 - Security Considerations for BioContainers Project

Issue - State: closed - Opened by lwratten over 4 years ago - 1 comment

#101 - Fix 404-link to Gitter

Pull Request - State: closed - Opened by stianlagstad almost 5 years ago

#100 - Bowtie2 missing in Bismark container

Issue - State: closed - Opened by stolarczyk over 5 years ago - 2 comments

#99 - Use label-schema.org compliant labels

Issue - State: closed - Opened by mr-c almost 6 years ago - 2 comments

#98 - Broken links in the docs

Issue - State: open - Opened by anton-khodak about 6 years ago - 2 comments

#97 - Additions to best practices/specs

Issue - State: closed - Opened by pcm32 over 6 years ago

#96 - Typos and layout corrections

Pull Request - State: closed - Opened by Raynooo over 6 years ago

#95 - Add test specs MarkDown file

Pull Request - State: closed - Opened by Raynooo over 6 years ago

#94 - GDPR considerations for the future.

Issue - State: closed - Opened by ypriverol over 6 years ago - 1 comment
Labels: enhancement

#93 - Multiline example added.

Pull Request - State: closed - Opened by ypriverol almost 7 years ago - 1 comment

#92 - More metadata into the recipes of BioConda and BioContainers

Issue - State: closed - Opened by ypriverol almost 7 years ago - 1 comment

#91 - Small changes in the current schema of the docker files.

Pull Request - State: closed - Opened by ypriverol about 7 years ago - 6 comments

#90 - propose to add license_file

Pull Request - State: closed - Opened by osallou about 7 years ago

#89 - minor changes in the spec

Pull Request - State: closed - Opened by ypriverol over 7 years ago

#88 - Changes in the figure of biocontainers, sandbox has been removed

Pull Request - State: closed - Opened by ypriverol over 7 years ago
Labels: enhancement

#87 - [WIP] Example usage of the Label Schema standard

Pull Request - State: closed - Opened by mr-c over 7 years ago - 10 comments

#86 - Fix email typo

Pull Request - State: closed - Opened by mr-c over 7 years ago - 1 comment

#85 - Wiki is apparently no more, remove link

Pull Request - State: closed - Opened by mr-c over 7 years ago

#84 - BioTools and BioContainers integration.

Issue - State: closed - Opened by ypriverol over 7 years ago - 32 comments

#83 - Update to use SPDX

Pull Request - State: closed - Opened by mr-c over 7 years ago - 1 comment

#82 - license field should use SPDX identifiers, not upstream URLs (too fragile)

Issue - State: closed - Opened by mr-c over 7 years ago - 12 comments

#81 - Containers should have maintainers that can be group or consortiums

Issue - State: closed - Opened by ypriverol over 7 years ago - 2 comments
Labels: enhancement

#80 - Containers with no "latest"

Issue - State: closed - Opened by slagelwa over 7 years ago - 4 comments
Labels: enhancement, question

#79 - Fix wrong link

Pull Request - State: closed - Opened by manabuishii over 7 years ago

#78 - BioContainers Specifications for Training

Issue - State: closed - Opened by ypriverol over 7 years ago - 3 comments

#77 - Hackathon in October

Issue - State: closed - Opened by ypriverol almost 8 years ago

#76 - why specifying base image in labels?

Issue - State: closed - Opened by osallou almost 8 years ago - 1 comment
Labels: question

#75 - contributing link broken

Issue - State: closed - Opened by osallou almost 8 years ago - 1 comment

#74 - Would be great to have in the registry the latest version of the software

Issue - State: closed - Opened by ypriverol almost 8 years ago
Labels: enhancement, Request

#73 - Combined searching of DIA umpire mgf files

Issue - State: closed - Opened by 1Moe about 8 years ago - 3 comments

#72 - changing dockerfile specs page

Pull Request - State: closed - Opened by prvst over 8 years ago

#71 - new user name

Issue - State: closed - Opened by prvst over 8 years ago
Labels: help wanted, question

#70 - Dual Base Image

Issue - State: closed - Opened by prvst over 8 years ago - 9 comments
Labels: question

#69 - Introducing layer-donning based containers for biocontainers

Issue - State: closed - Opened by bgruening over 8 years ago - 25 comments

#68 - reformatting dockerfile template

Issue - State: closed - Opened by prvst over 8 years ago - 41 comments
Labels: enhancement, help wanted

#67 - removing CMD examples from Dockerfile header

Issue - State: closed - Opened by prvst over 8 years ago - 5 comments
Labels: question

#66 - typos mostly

Pull Request - State: closed - Opened by hroest over 8 years ago

#65 - New Guidelines for BioDocker

Pull Request - State: closed - Opened by ypriverol over 8 years ago - 5 comments

#64 - Raw file reader/converter

Issue - State: closed - Opened by hroest over 8 years ago - 49 comments
Labels: enhancement, help wanted

#63 - Rename

Issue - State: closed - Opened by ypriverol over 8 years ago - 6 comments
Labels: enhancement, help wanted, question

#62 - BioDocker Paper

Issue - State: closed - Opened by ypriverol over 8 years ago - 2 comments

#61 - BioDocker vs BioContainers logo

Issue - State: closed - Opened by rajido over 8 years ago - 11 comments

#60 - BioDocker Future Ideas and Implementations: testing of containers

Issue - State: closed - Opened by pcm32 over 8 years ago - 10 comments
Labels: question

#59 - BioDocker Future Ideas and Implementations

Issue - State: closed - Opened by ypriverol over 8 years ago - 5 comments
Labels: enhancement, question

#58 - Spin-off for geospatial community

Issue - State: closed - Opened by nuest over 8 years ago - 2 comments
Labels: question

#57 - Should we start using Quay.io ?

Issue - State: closed - Opened by prvst over 8 years ago - 5 comments
Labels: question

#56 - Adopting CMD for simple containers

Issue - State: closed - Opened by prvst over 8 years ago
Labels: question

#55 - Shared environment use case?

Issue - State: closed - Opened by eburgueno over 8 years ago - 20 comments
Labels: help wanted

#54 - Specifications Refinements

Issue - State: closed - Opened by ypriverol over 8 years ago
Labels: enhancement, help wanted, question

#53 - New sections to Wiki

Issue - State: closed - Opened by prvst over 8 years ago
Labels: enhancement, help wanted

#52 - Status page returns an error

Issue - State: closed - Opened by prvst over 8 years ago
Labels: bug

#51 - Biodocker base image fails during build

Issue - State: closed - Opened by prvst over 8 years ago - 1 comment
Labels: bug

#50 - Some comments in the current guidelines

Issue - State: closed - Opened by ypriverol over 8 years ago - 4 comments
Labels: enhancement, help wanted

#49 - Upgrade base image

Issue - State: closed - Opened by prvst almost 9 years ago - 5 comments
Labels: question

#48 - biodocker and bioboxes

Issue - State: closed - Opened by aliceminotto almost 9 years ago - 3 comments

#47 - Fixed numerous typos README

Pull Request - State: closed - Opened by vsivsi almost 9 years ago

#46 - Docker is adopting Alpine Linux

Issue - State: closed - Opened by prvst about 9 years ago - 1 comment
Labels: question

#45 - DeNovoGUI

Issue - State: closed - Opened by prvst about 9 years ago - 17 comments
Labels: bug, help wanted

#44 - BioDocker GUI

Issue - State: closed - Opened by prvst about 9 years ago - 1 comment
Labels: question

#43 - OpenMS 2.0

Issue - State: closed - Opened by prvst about 9 years ago - 15 comments
Labels: Request

#42 - Adopting Conda for binary management

Issue - State: closed - Opened by prvst about 9 years ago
Labels: question

#41 - update dockerfile for several containers

Issue - State: closed - Opened by prvst about 9 years ago
Labels: help wanted

#40 - pipeline ballooning the number of builds

Issue - State: closed - Opened by sauloal over 9 years ago - 7 comments
Labels: bug, help wanted, question

#39 - Update README.md

Pull Request - State: closed - Opened by sauloal over 9 years ago

#38 - Users must have a way to know where the programs are inside containers

Issue - State: closed - Opened by prvst over 9 years ago - 10 comments
Labels: bug

#37 - USER biodocker do not have permission to access /data

Issue - State: closed - Opened by prvst over 9 years ago - 1 comment
Labels: bug

#36 - Should we have an extended dockerfile header and skip the readme ?

Issue - State: closed - Opened by sauloal over 9 years ago - 9 comments
Labels: question

#35 - Official chanel for communication

Issue - State: closed - Opened by prvst over 9 years ago - 9 comments
Labels: question

#34 - Should we use shippable for testing?

Issue - State: closed - Opened by sauloal over 9 years ago - 5 comments
Labels: question

#33 - I'm not an artist, but what about this logo?

Issue - State: closed - Opened by sauloal over 9 years ago - 15 comments
Labels: help wanted, question

#32 - Non-trivial pull requests needs approval of simple majority of commiters?

Issue - State: closed - Opened by sauloal over 9 years ago - 1 comment
Labels: question

#31 - Should we create folders with symlinks to themed repositories?

Issue - State: closed - Opened by sauloal over 9 years ago - 3 comments
Labels: question

#30 - Move containers to containers2 and create a new containers repository

Issue - State: closed - Opened by sauloal over 9 years ago - 2 comments
Labels: question

#29 - goals for publication

Issue - State: closed - Opened by prvst over 9 years ago - 6 comments
Labels: help wanted

#28 - Update CONTRIBUTING.md

Pull Request - State: closed - Opened by sauloal over 9 years ago - 1 comment

#27 - Spec for helper scripts

Issue - State: closed - Opened by sauloal over 9 years ago - 1 comment
Labels: question

#26 - One folder for each version?

Issue - State: closed - Opened by sauloal over 9 years ago - 5 comments
Labels: question

#25 - should we accept puppet and other orchestration programs

Issue - State: closed - Opened by sauloal over 9 years ago - 2 comments
Labels: question

#24 - Should we allow privileged containers? docker inside docker?

Issue - State: closed - Opened by sauloal over 9 years ago - 4 comments
Labels: question

#23 - should we have our own base image?

Issue - State: closed - Opened by sauloal over 9 years ago - 12 comments
Labels: question

#22 - dev dockerhub channel

Issue - State: closed - Opened by sauloal over 9 years ago - 8 comments
Labels: enhancement

#21 - dockerfile template missing repository name and how to build it

Issue - State: closed - Opened by sauloal over 9 years ago - 3 comments

#20 - CONTRIBUTING Documment added

Pull Request - State: closed - Opened by ypriverol over 9 years ago - 1 comment

#19 - Add a Gitter chat badge to README.md

Pull Request - State: closed - Opened by gitter-badger over 9 years ago

#18 - other typo

Pull Request - State: closed - Opened by lgatto over 9 years ago

#17 - Fix typo

Pull Request - State: closed - Opened by lgatto over 9 years ago

#16 - should only LTS base OS be used?

Issue - State: closed - Opened by sauloal over 9 years ago - 11 comments

#15 - Compulsory test in travis?

Issue - State: closed - Opened by sauloal over 9 years ago - 19 comments
Labels: question

#14 - wiki link broken

Issue - State: closed - Opened by sauloal over 9 years ago - 1 comment

#13 - Create a HOW to contribute Page

Issue - State: closed - Opened by ypriverol over 9 years ago - 10 comments
Labels: enhancement, help wanted

#12 - make your participation public

Issue - State: closed - Opened by prvst over 9 years ago - 2 comments
Labels: help wanted

#11 - we need a logo

Issue - State: closed - Opened by prvst over 9 years ago - 9 comments
Labels: enhancement

#10 - Domain Configuration

Issue - State: closed - Opened by prvst over 9 years ago - 3 comments
Labels: enhancement

#9 - Spec for a unified data exchange volume

Issue - State: closed - Opened by bgruening over 9 years ago - 13 comments
Labels: help wanted

#8 - Spec for a unified ENTRYPOINT

Issue - State: closed - Opened by bgruening over 9 years ago - 25 comments
Labels: enhancement

#7 - One single repository for containers

Issue - State: closed - Opened by bgruening over 9 years ago - 16 comments

GitHub / biocontainers/specs issues and pull requests