Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / biobakery/halla issues and pull requests

#58 - Added rpy2 check (try/except check)

Pull Request - State: closed - Opened by sagun98 4 months ago - 2 comments

#57 - Fixed dependencies version for halla

Pull Request - State: closed - Opened by sagun98 5 months ago - 2 comments

#56 - requirements.txt lists sklearn which is no longer a valid pypi project

Issue - State: closed - Opened by smdabdoub over 2 years ago - 1 comment

#55 - Missing data

Issue - State: closed - Opened by Lucas-Maciel about 3 years ago - 1 comment

#54 - Version update

Pull Request - State: closed - Opened by sagun98 over 3 years ago

#53 - Fixed dependencies install error

Pull Request - State: closed - Opened by sagun98 over 3 years ago

#52 - Bump pyyaml from 5.3.1 to 5.4

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#51 - Synced version with PyPi

Pull Request - State: closed - Opened by sagun98 almost 4 years ago

#50 - Ghz

Pull Request - State: closed - Opened by andrewGhazi almost 4 years ago

#49 - Enable running alla on console

Pull Request - State: closed - Opened by katsudon16 about 4 years ago

#48 - Ensure correct type in data preprocessing

Pull Request - State: closed - Opened by katsudon16 about 4 years ago

#47 - Handle NaN among continuous data in diagnostic plot

Pull Request - State: closed - Opened by katsudon16 about 4 years ago

#46 - Add hallagram and hallanostic scripts

Pull Request - State: closed - Opened by katsudon16 about 4 years ago

#45 - Enhancements

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#44 - Enable halla command line

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#43 - Enable running with a command line

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#42 - Beautify hallagram

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#41 - Enhancement

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#40 - Enhanced hallagram & clustermap

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#39 - Verbose + bump version to 0.0.2

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#38 - Finalize setup for user installation

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#37 - Feature filter

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#36 - Diagnostic plot update

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#35 - Remove features with low entropy given threshold

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#34 - Handle missing data

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#33 - Multiprocessing

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#32 - Fix gpd

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#31 - Enable multiprocessing with ray library

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#30 - GPD

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#29 - Fix hallagram heatmap grid

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#28 - PRISM v2

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#27 - PRISM dataset

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#26 - Rank clusters

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#25 - Minor changes for simulation

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#24 - Run simulation

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#23 - Implement generalized pairs plot as the diagnostic plot

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#22 - Add simulation file

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#21 - Alla

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#20 - Generate report tables

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#19 - Synthetic data [cont]

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#18 - Synthetic data [cont]

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#17 - Synthetic data: line association

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#16 - Add more p-value tests (in total of 36 tests)

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#15 - Test nutrimouse

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#14 - Hallagram

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#13 - Tests on step 3

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#12 - Tests for p-value permutation test

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#11 - Evaluate stats utility functions

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#10 - [unit tests] utils.data functions

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#9 - Test by level

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#8 - Minor update on discretization/distance

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#7 - Discretization

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#6 - Permutation - ecdf for getting p-values

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#5 - Enable computing pairwise similarity matrix

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#4 - Add NMI, pearson, and spearman distance functions

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#2 - Enable customizing pdist metric

Pull Request - State: closed - Opened by katsudon16 over 4 years ago

#1 - Init HAllA - implement step 1: hierarchical clustering

Pull Request - State: closed - Opened by katsudon16 over 4 years ago