biobakery/MetaPhlAn issues and pull requests

#128 - Different output for metaphlan2 and metaphlan3

Issue - State: closed - Opened by mflynn-lanl over 4 years ago - 1 comment

#127 - running fasta file with metaphlan3 but empty output

Issue - State: closed - Opened by mars188 over 4 years ago - 6 comments

#126 - how to calculate the coverage and abundance

Issue - State: closed - Opened by QuanLG over 4 years ago - 2 comments

#125 - Resolve hanging process by replacing sys.exit in thread with raise

Pull Request - State: closed - Opened by ljmciver over 4 years ago

#124 - Multiple conspecific strains in the same sample

Issue - State: closed - Opened by zhixingfeng over 4 years ago

#123 - NOTE: Instead of opening issues in github, please consider creating a new topic in https://forum.biobakery.org/. Please read for more details.

Issue - State: closed - Opened by sagun98 over 4 years ago - 2 comments
Labels: IMPORTANT NOTE TO ALL USERS

#122 - Question on abundance output

Issue - State: closed - Opened by dylan-lawrence over 4 years ago - 1 comment

#121 - fix keyerr "clade" of cl2ab

Pull Request - State: closed - Opened by xiestcn over 4 years ago

#117 - metaphlan2-2.96.1-py_0.tar.bz2---database

Issue - State: closed - Opened by bluesea2018 over 4 years ago - 1 comment

#115 - [BUG]UNKNOWN clade

Issue - State: closed - Opened by lexleong over 4 years ago - 3 comments

#113 - [BUG] merge_metaphlan_tables.py errors on inputs with >4 header rows

Issue - State: closed - Opened by bballew over 4 years ago - 13 comments

#112 - [requested feature] sample2markers.py: specify temporary directory

Issue - State: closed - Opened by nick-youngblut over 4 years ago - 2 comments

#105 - Metaphlan Conda Repository

Issue - State: closed - Opened by mweberr over 4 years ago - 1 comment

#103 - [BUG] database installation error

Issue - State: closed - Opened by mcahn over 4 years ago - 34 comments

#92 - metaphlan3 phylogenetic tree

Issue - State: closed - Opened by fconstancias over 4 years ago - 17 comments

#86 - Unable to download https://www.dropbox.com/sh/7qze7m7g9fe2xjg/AAA4XDP85WHon_eHvztxkamTa/file_list.txt?dl=1

Issue - State: closed - Opened by srosales712 almost 5 years ago - 26 comments
Labels: enhancement

#78 - KeyError: 'mpa_mpa_v296_CHOCOPhlAn_201901.tar'

Issue - State: closed - Opened by kescobo almost 5 years ago - 15 comments

#76 - confusion on several paremeters

Issue - State: closed - Opened by ZhangDengwei almost 5 years ago - 1 comment

#63 - singularity use

Issue - State: closed - Opened by fbeghini almost 5 years ago - 1 comment
Labels: bug, major

Ecosyste.ms: Issues

GitHub / biobakery/MetaPhlAn issues and pull requests