bioSyntax/bioSyntax issues and pull requests

#68 - VSCode: Need a light mode

Issue - State: open - Opened by Artoria2e5 2 months ago - 5 comments
Labels: ΛΞＳＴＨΞＴＩＣS, beginner-friendly

#67 - VSCode: Very poor visibility in hydro mode

Issue - State: open - Opened by Artoria2e5 2 months ago

#66 - VSCode: Opening up protein fasta files is really inconsistent

Issue - State: open - Opened by KeaunAmani over 1 year ago - 6 comments

#65 - Bump minimist from 1.2.5 to 1.2.8 in /vscode

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#64 - Bump flat and mocha in /vscode

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#63 - [Feature] section folding for fasta

Issue - State: closed - Opened by jayagami about 2 years ago - 3 comments

#62 - Bump minimist from 1.2.5 to 1.2.6 in /vscode

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#61 - Publish the VSCode extension to Open VSX

Issue - State: closed - Opened by MillironX over 2 years ago - 2 comments

#60 - VSCode: bioSyntax extension causes theme to reset to VSCode default

Issue - State: open - Opened by harryjubb over 3 years ago - 5 comments

#59 - Improve VSCode color theme support

Pull Request - State: closed - Opened by MillironX over 3 years ago - 1 comment

#58 - vim-addons: "Warning: ignoring 'biosyntax' which is missing source files"

Issue - State: open - Opened by sguizard over 3 years ago - 1 comment

#57 - src-hilite-lesspipe-bio.sh: No such file or directory

Issue - State: closed - Opened by MeHelmy over 3 years ago - 1 comment

#56 - Enanble "Extension Settings" in the VS Code package

Issue - State: open - Opened by bosborne almost 4 years ago - 3 comments

#55 - amino-colouring for less

Issue - State: closed - Opened by avilella about 4 years ago - 4 comments

#54 - Biosyntax with Jupyternotebook

Issue - State: closed - Opened by allamiro over 4 years ago - 2 comments

#53 - Trouble installing biosyntax on Ubuntu 19.04

Issue - State: closed - Opened by moldach over 4 years ago - 16 comments

#52 - Installed biosyntax-less from apt, don't have sam-less or vcf-less?

Issue - State: closed - Opened by cmdcolin over 4 years ago - 3 comments

#51 - Overrides existing .bashrc with .bash_profile

Issue - State: closed - Opened by matthewstuartedwards over 4 years ago - 1 comment

#50 - Option to disable automatic theme switching in VSCode

Issue - State: closed - Opened by Benjamin-Lee about 5 years ago - 13 comments

#49 - Update the VSCode extension?

Issue - State: closed - Opened by alanhoyle over 5 years ago - 2 comments

#48 - added several more reserved words for cwl

Pull Request - State: closed - Opened by alanhoyle over 5 years ago

#47 - Improve VSCode default comment function behavior

Pull Request - State: closed - Opened by alanhoyle over 5 years ago - 2 comments

#46 - Support for FSA Files Syntax

Issue - State: closed - Opened by jennifertran over 5 years ago - 4 comments

#45 - OBF Newsletter submission

Issue - State: closed - Opened by grabear about 6 years ago - 1 comment

#44 - Strange characters in fastq file

Issue - State: closed - Opened by pabloivan about 6 years ago - 6 comments

#43 - New devs as co-authors

Issue - State: closed - Opened by ababaian over 6 years ago

#42 - Automatically switch the theme

Pull Request - State: closed - Opened by liyao001 over 6 years ago

#41 - bioSyntax Slack Channel

Issue - State: closed - Opened by alyeffy over 6 years ago

#40 - Character highlighting option

Issue - State: closed - Opened by Benjamin-Lee over 6 years ago - 7 comments
Labels: feature

#39 - Port to VSCode

Pull Request - State: closed - Opened by liyao001 over 6 years ago - 6 comments

#38 - Mozilla Sprint 2018

Issue - State: closed - Opened by alyeffy over 6 years ago
Labels: mozsprint2018, beginner-friendly, challenging, moderate-difficulty

#37 - Develop Rainbow Parentheses/Rainbow Levels Script for Newick Trees

Issue - State: closed - Opened by alyeffy over 6 years ago
Labels: feature, mozsprint2018, moderate-difficulty

#36 - Optimize Regex Engine for VCF

Issue - State: closed - Opened by alyeffy over 6 years ago
Labels: mozsprint2018, challenging

#35 - Port for NotePad++/BBEdit/TextWrangler

Issue - State: closed - Opened by alyeffy over 6 years ago
Labels: port, mozsprint2018, moderate-difficulty

#34 - Package bioSyntax for conda

Issue - State: closed - Opened by alyeffy over 6 years ago
Labels: mozsprint2018, challenging

#33 - Port to Emacs

Issue - State: closed - Opened by alyeffy over 6 years ago
Labels: port, mozsprint2018, moderate-difficulty

#32 - Port to VSCode

Issue - State: closed - Opened by alyeffy over 6 years ago - 3 comments
Labels: port, mozsprint2018, moderate-difficulty

#31 - Replace cp+chmod by install

Pull Request - State: closed - Opened by daissi over 6 years ago - 9 comments

#30 - Survey Results

Issue - State: closed - Opened by Jwong684 over 6 years ago

#29 - Add some system files to improve the system integration: manpage, appstream metadata

Pull Request - State: closed - Opened by daissi over 6 years ago

#28 - Update makeRelease.sh

Pull Request - State: closed - Opened by daissi over 6 years ago - 1 comment

#27 - Expand bioSyntax to other (non-biological) file formats

Issue - State: closed - Opened by alyeffy over 6 years ago
Labels: file format, mozsprint2018, challenging

#26 - Port to Atom

Issue - State: open - Opened by alyeffy over 6 years ago - 2 comments
Labels: port, beginner-friendly

#25 - Develop built-in help manuals for existing packages

Issue - State: open - Opened by alyeffy over 6 years ago - 2 comments
Labels: documentation, beginner-friendly

#24 - bioSyntax Review Meeting #2

Issue - State: closed - Opened by ababaian over 6 years ago - 13 comments
Labels: meet, discussion

#23 - Manuscript Revisions -- Research and Notes

Issue - State: closed - Opened by lazypanda10117 over 6 years ago - 3 comments

#22 - Test and report bugs for Windows installation

Issue - State: closed - Opened by alyeffy over 6 years ago - 1 comment
Labels: bug, help, moderate-difficulty

#21 - Develop a Linux Ubuntu package for Launchpad

Issue - State: closed - Opened by alyeffy over 6 years ago - 12 comments
Labels: help, mozsprint2018, moderate-difficulty

#20 - Develop a brew formula

Issue - State: open - Opened by alyeffy over 6 years ago - 4 comments
Labels: help, moderate-difficulty

#19 - Reviews Meeting -- March 15th

Issue - State: closed - Opened by ababaian over 6 years ago - 12 comments
Labels: meet

#18 - Fix GTF Syntax

Pull Request - State: closed - Opened by lazypanda10117 over 6 years ago

#17 - bioSyntax Meet-up I

Issue - State: closed - Opened by ababaian almost 7 years ago
Labels: meet

#16 - Nano Pull request

Pull Request - State: closed - Opened by Ebedthan almost 7 years ago - 2 comments

#15 - gedit-gtf: Use Robust Column Selection

Issue - State: closed - Opened by ababaian almost 7 years ago - 5 comments
Labels: bug

#14 - Fasta syntax

Issue - State: closed - Opened by nzachow almost 7 years ago - 8 comments
Labels: discussion

#13 - Port to nano/pico

Issue - State: open - Opened by Ebedthan almost 7 years ago - 20 comments
Labels: help, port, challenging

#12 - 2-shade Chromosome Coordinates

Issue - State: closed - Opened by ababaian almost 7 years ago - 1 comment
Labels: feature

#11 - Vim & Sublime submodulized. Sublime install simplified.

Pull Request - State: closed - Opened by ababaian almost 7 years ago

#10 - Request for nano support

Issue - State: closed - Opened by jrjhealey almost 7 years ago - 2 comments
Labels: help, port

#9 - merge previous submodules1 branch

Pull Request - State: closed - Opened by ababaian almost 7 years ago

#8 - Submodulize bioSyntax-sublime & bioSyntax-vim

Issue - State: closed - Opened by ababaian almost 7 years ago - 1 comment

#7 - Sublime: Automatically apply bioSyntax.theme when opening bio-format.

Issue - State: closed - Opened by ababaian almost 7 years ago - 6 comments
Labels: feature

#6 - About Vim highlight

Issue - State: closed - Opened by Shengqian95 almost 7 years ago - 4 comments

#5 - add .aln extention and conserved pos line for clustal

Pull Request - State: closed - Opened by vievieyu almost 7 years ago

#4 - sam-gedit Language File. Add style definitions

Issue - State: closed - Opened by ababaian almost 7 years ago - 1 comment
Labels: bug

#3 - Update bioSyntax_SETUP.sh

Pull Request - State: closed - Opened by GuangchuangYu almost 7 years ago - 3 comments

#2 - bioSyntax TODO

Issue - State: open - Opened by ababaian almost 7 years ago - 1 comment
Labels: help

#1 - File Format Compatibility Matrix

Issue - State: open - Opened by ababaian almost 7 years ago - 3 comments
Labels: file format

GitHub / bioSyntax/bioSyntax issues and pull requests