Ecosyste.ms: Issues

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GitHub / bioFAM/MOFA issues and pull requests

#68 - Vignette html flies not accessible

Issue - State: open - Opened by NadjaBrun about 2 months ago

#67 - Archive this repo

Issue - State: open - Opened by artur-sannikov 3 months ago

#66 - 'MOFAtools'

Issue - State: open - Opened by yuan596 over 2 years ago

#65 - predict function should use S3 dispatching

Issue - State: open - Opened by sthawinke about 3 years ago

#63 - Problem to use plotVarianceExplained object in ggplot2

Issue - State: open - Opened by Chenjiani1112 over 3 years ago

#62 - Problem to use mofaOBJECT

Issue - State: open - Opened by geraldocantelli over 3 years ago - 2 comments

#61 - Thanks. another problem on running MOFA

Issue - State: closed - Opened by Chenjiani1112 over 3 years ago

#60 - Different data processing on metabolomics, I get different R2.

Issue - State: open - Opened by Chenjiani1112 over 3 years ago - 7 comments

#59 - AssertionError: dimensionality mismatch

Issue - State: open - Opened by wjddyd66 almost 4 years ago - 1 comment

#58 - error message: mofapy package not found.

Issue - State: closed - Opened by squirrelB almost 4 years ago - 2 comments

#57 - Failure to Capture Common Sources of Variance in Data

Issue - State: open - Opened by whitleyo almost 4 years ago - 1 comment

#55 - Issue with runMOFA(object)

Issue - State: closed - Opened by vd4mmind over 4 years ago - 1 comment

#54 - Question on initialization

Issue - State: closed - Opened by BennyStrobes over 4 years ago - 2 comments

#53 - MOFA2: IndexError: list index out of range

Issue - State: closed - Opened by chrarnold over 4 years ago - 1 comment

#52 - plotDataHeatmap() error with correlation but not with euclidean distance

Issue - State: closed - Opened by merlevede over 4 years ago - 2 comments

#51 - Documentation missmatch for getDefaultModelOptions()$numFactors

Issue - State: closed - Opened by frederikziebell over 4 years ago - 1 comment

#50 - AttributeError: module 'mofapy' has no attribute 'core.entry_point'

Issue - State: closed - Opened by dfermin over 4 years ago - 4 comments

#49 - Improving memory efficiency for CITE-seq data analysis

Issue - State: closed - Opened by LTLA over 4 years ago - 5 comments

#48 - errors in installing MOFA

Issue - State: closed - Opened by zjwzzzz over 4 years ago - 2 comments

#47 - ERROR in

Issue - State: closed - Opened by huyoujinlab over 4 years ago

#45 - plotDataHeatmap() plots interpretation

Issue - State: closed - Opened by merlevede almost 5 years ago - 5 comments

#44 - Likelihood for methylation data

Issue - State: closed - Opened by merlevede almost 5 years ago - 7 comments

#43 - Range of total variance explained per view

Issue - State: closed - Opened by merlevede almost 5 years ago - 4 comments

#42 - Enrichment analysis with HUGO symbols

Issue - State: closed - Opened by merlevede almost 5 years ago - 2 comments

#41 - How can I extract the gene sets with larger weights in the factors?

Issue - State: closed - Opened by nnlrl almost 5 years ago - 2 comments

#40 - function "plotTilesData" not included in MOFA package from BiocManager

Issue - State: closed - Opened by SBassler almost 5 years ago - 2 comments

#39 - Error when creating object from MAE

Issue - State: closed - Opened by andreanuzzo almost 5 years ago - 3 comments

#38 - Failure to install with custom python

Issue - State: closed - Opened by s-andrews about 5 years ago - 2 comments

#37 - plotEnrichmentHeatmap doesn't pass arguments to pheatmap

Issue - State: closed - Opened by emdann about 5 years ago - 1 comment

#36 - Do added Markov Blankets get passed over?

Issue - State: closed - Opened by vsomnath over 5 years ago - 3 comments

#35 - Missing for loop

Issue - State: closed - Opened by vsomnath over 5 years ago - 2 comments

#33 - Truncated feature names after runMOFA

Issue - State: closed - Opened by fanli-gcb over 5 years ago - 2 comments

#32 - Fix dropping of more than one factor

Pull Request - State: closed - Opened by brandoninvergo over 5 years ago - 1 comment

#31 - Error in py_call_impl(callable, dots$args, dots$keywords) : SystemExit: None

Issue - State: closed - Opened by ulexis99 over 5 years ago - 2 comments

#29 - Trouble Installing MOFA in R

Issue - State: closed - Opened by AmyLei96 over 5 years ago - 4 comments

#28 - Feature request: FSEA direction of pathway/factor association

Issue - State: closed - Opened by whitleyo over 5 years ago - 2 comments

#27 - Endless Removal of Factors

Issue - State: closed - Opened by whitleyo over 5 years ago - 6 comments

#26 - ValueError in getLvIndex

Issue - State: closed - Opened by jonathanronen over 5 years ago - 2 comments

#25 - License?

Issue - State: closed - Opened by vijay-10x over 5 years ago - 2 comments

#24 - Error in py_call_impl(callable, dots$args, dots$keywords)

Issue - State: closed - Opened by CarlBrunius over 5 years ago - 6 comments

#23 - Error in py_call_impl(callable, dots$args, dots$keywords) : SystemExit: None

Issue - State: closed - Opened by brickyyyy over 5 years ago - 5 comments

#22 - Error in runMOFA function

Issue - State: closed - Opened by ashishjain1988 over 5 years ago - 6 comments

#21 - BLAS libraries use maximum number of available cores.

Issue - State: closed - Opened by sritchie73 over 5 years ago - 2 comments

#20 - Training and validation set

Issue - State: closed - Opened by anso-sertier almost 6 years ago - 1 comment

#19 - createMOFAobject() function - error with view names

Issue - State: closed - Opened by QinqinHuang almost 6 years ago - 5 comments

#18 - Error with runMOFA

Issue - State: closed - Opened by anso-sertier almost 6 years ago - 4 comments

#17 - Error for runMOFA

Issue - State: closed - Opened by nitishkumarmishra almost 6 years ago - 1 comment

#16 - AttributeError: 'numpy.ndarray' object has no attribute 'as_matrix'

Issue - State: closed - Opened by GMFranceschini about 6 years ago - 2 comments

#14 - Error creating vignettes during R CMD build

Issue - State: closed - Opened by kcha about 6 years ago - 4 comments

#13 - Subsetting Data Prior to Running MOFA

Issue - State: closed - Opened by whitleyo over 6 years ago - 3 comments

#12 - Imputation of Factor Loadings

Issue - State: closed - Opened by whitleyo over 6 years ago - 4 comments

#11 - MOFAtools.rdb corrupt

Issue - State: closed - Opened by whitleyo over 6 years ago - 3 comments

#10 - variable %in% names(object@Expectations) is not TRUE

Issue - State: closed - Opened by rosshandler over 6 years ago - 2 comments

#9 - fix minor syntax error

Pull Request - State: closed - Opened by jan-glx over 6 years ago

#8 - Factors should have names starting with a letter

Issue - State: closed - Opened by DarwinAwardWinner over 6 years ago - 6 comments

#7 - FactorBeeswarmPlot uses unnecessary x aesthetic

Issue - State: closed - Opened by DarwinAwardWinner over 6 years ago - 1 comment

#6 - Allow arbitrary extra options in runMOFA (and fix a bug)

Pull Request - State: closed - Opened by DarwinAwardWinner over 6 years ago - 3 comments

#5 - make the `show` method for MOFAmodel a little prettier

Pull Request - State: closed - Opened by ttriche over 6 years ago

#3 - new bug in calculateVarianceExplained

Issue - State: closed - Opened by damienArnol over 6 years ago

#2 - bug in calculateVarianceExplained for only one view

Issue - State: closed - Opened by damienArnol over 6 years ago

#1 - fixed problem with glob import

Pull Request - State: closed - Opened by jan-glx about 7 years ago