Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / bio4j/bio4j-titan issues and pull requests

#77 - Unused PropertyKeys and Vertex/EdgeLabels

Issue - State: open - Opened by laughedelic over 8 years ago

#76 - Setup Codacy

Pull Request - State: closed - Opened by laughedelic over 8 years ago
Labels: org

#75 - NCBITaxonomy scientific name parsing is broken

Pull Request - State: closed - Opened by laughedelic over 8 years ago
Labels: bug, taxonomy

#74 - Improve docs

Pull Request - State: closed - Opened by laughedelic over 8 years ago - 2 comments
Labels: docs, improvement

#73 - Full distribution untared

Issue - State: open - Opened by laughedelic almost 9 years ago - 2 comments
Labels: 3 - needs review, data

#72 - Support for Titan 1.x and TinkerPop 3.1.x

Issue - State: open - Opened by dylanht almost 9 years ago - 1 comment
Labels: question, 2 - in progress

#71 - Where to get bio4j-titan-0.4.0-SNAPSHOT-fat.jar?

Issue - State: closed - Opened by oxyko almost 9 years ago - 4 comments
Labels: question

#70 - Docs - improve instructions for non-AWS import

Pull Request - State: closed - Opened by eparejatobes about 9 years ago - 2 comments
Labels: docs, better, non-aws

#69 - Updating bioinfo dep

Pull Request - State: closed - Opened by laughedelic about 9 years ago
Labels: update, deps

#68 - Release 0.4.0-RC1

Pull Request - State: closed - Opened by eparejatobes about 9 years ago - 1 comment

#67 - Better docs for cmdline access to S3 distribution

Pull Request - State: closed - Opened by eparejatobes about 9 years ago
Labels: docs, s3

#66 - Improve the AWS distribution docs

Pull Request - State: closed - Opened by eparejatobes over 9 years ago - 6 comments
Labels: docs, aws

#65 - Checksums for the distributions

Issue - State: closed - Opened by laughedelic over 9 years ago - 2 comments
Labels: enhancement

#64 - Updating/organizing/docs

Pull Request - State: closed - Opened by pablopareja over 9 years ago

#63 - improving Titan db opening times

Issue - State: closed - Opened by eparejatobes over 9 years ago - 10 comments

#62 - file namings

Issue - State: closed - Opened by evdokim over 9 years ago - 2 comments

#61 - Exception when importing UniRef in current version

Issue - State: closed - Opened by pablopareja almost 10 years ago - 44 comments

#60 - Problem importing UniProtGo with the last version

Pull Request - State: closed - Opened by pablopareja almost 10 years ago - 9 comments
Labels: bug

#59 - properties and Titan import metrics

Pull Request - State: closed - Opened by eparejatobes almost 10 years ago - 3 comments

#58 - update to the new naming conditions in bio4j/bio4j

Issue - State: closed - Opened by eparejatobes almost 10 years ago - 2 comments
Labels: enhancement

#57 - test the new UniProt import process

Pull Request - State: closed - Opened by eparejatobes almost 10 years ago - 12 comments

#56 - Bug regarding indices initialization

Issue - State: closed - Opened by pablopareja almost 10 years ago - 6 comments
Labels: bug

#55 - Review access modifiers

Issue - State: open - Opened by eparejatobes almost 10 years ago

#54 - factor out type and index management to an interface

Issue - State: open - Opened by eparejatobes almost 10 years ago - 1 comment
Labels: enhancement

#53 - Index not found with unique index query

Pull Request - State: closed - Opened by eparejatobes almost 10 years ago - 7 comments
Labels: bug

#53 - Index not found with unique index query

Pull Request - State: closed - Opened by eparejatobes almost 10 years ago - 7 comments
Labels: bug

#52 - update to angulillos-titan 0.2.0

Issue - State: closed - Opened by eparejatobes almost 10 years ago
Labels: enhancement, angulillos

#51 - Is there any reason for using Titan 0.5.1 instead of 0.5.2 here?

Issue - State: closed - Opened by pablopareja almost 10 years ago - 5 comments
Labels: question, angulillos

#50 - Adequate config values for version using titan 0.5.2

Issue - State: closed - Opened by pablopareja almost 10 years ago - 5 comments
Labels: enhancement, question

#49 - The new version takes forever!!

Pull Request - State: closed - Opened by pablopareja almost 10 years ago - 15 comments
Labels: enhancement, question

#48 - use withXXX methods when building graphs with dependencies

Pull Request - State: closed - Opened by eparejatobes almost 10 years ago - 5 comments
Labels: enhancement, use, with

#47 - 0.4 release

Issue - State: closed - Opened by eparejatobes almost 10 years ago - 4 comments
Labels: docs

#46 - first full data import for the new version

Issue - State: closed - Opened by eparejatobes almost 10 years ago - 8 comments

#45 - S3 based data distribution

Issue - State: closed - Opened by eparejatobes almost 10 years ago - 18 comments
Labels: enhancement, question, docs

#44 - implement the new properties in uniprot uniref module

Pull Request - State: closed - Opened by eparejatobes about 10 years ago - 3 comments
Labels: enhancement

#43 - alternative product key is wrong

Issue - State: closed - Opened by eparejatobes about 10 years ago - 3 comments
Labels: bug, data

#42 - Problem with angulillos-titan at branch update/angulillos/0.2

Issue - State: closed - Opened by pablopareja about 10 years ago - 4 comments

#41 - update to angulilos-titan 0.2

Pull Request - State: closed - Opened by eparejatobes about 10 years ago - 15 comments
Labels: enhancement, update, angulillos

#40 - update to Titan 0.5?

Issue - State: closed - Opened by eparejatobes about 10 years ago - 7 comments
Labels: enhancement, question

#39 - update to angulillos-titan 0.1.0

Issue - State: closed - Opened by eparejatobes about 10 years ago - 1 comment
Labels: 2 - in progress

#38 - Improving performance of the importing process

Issue - State: open - Opened by pablopareja about 10 years ago - 26 comments
Labels: enhancement

#37 - Help need to use local storage on AWS for the importing process

Issue - State: closed - Opened by pablopareja about 10 years ago - 13 comments
Labels: question, docs

#36 - 6

Issue - State: closed - Opened by pablopareja about 10 years ago

#35 - 4

Issue - State: closed - Opened by pablopareja about 10 years ago

#34 - 3

Issue - State: closed - Opened by pablopareja about 10 years ago

#33 - 2

Issue - State: closed - Opened by pablopareja about 10 years ago

#32 - 1

Issue - State: closed - Opened by pablopareja about 10 years ago

#31 - Help needed to publish and run sbt from AWS

Issue - State: open - Opened by pablopareja about 10 years ago - 25 comments
Labels: enhancement

#30 - Where to put test module DBs?

Issue - State: closed - Opened by pablopareja about 10 years ago - 6 comments

#29 - What to do with old tax ids coming from merged.dmp file?

Issue - State: closed - Opened by pablopareja over 10 years ago - 2 comments

#28 - Upgrading Isoforms to proteins?

Issue - State: closed - Opened by pablopareja over 10 years ago - 8 comments

#27 - Possible issue with typed graphs methods for indices

Issue - State: closed - Opened by pablopareja over 10 years ago - 26 comments

#26 - How to deal with interdependent modules

Issue - State: closed - Opened by pablopareja over 10 years ago - 3 comments

#25 - Problem when publishing

Issue - State: closed - Opened by pablopareja over 10 years ago - 5 comments

#24 - So what's up with RefSeq in the end?

Issue - State: closed - Opened by pablopareja over 10 years ago - 3 comments

#23 - Modelling external references in new version

Issue - State: closed - Opened by pablopareja over 10 years ago - 10 comments

#22 - enzymedb - new data model

Pull Request - State: closed - Opened by eparejatobes over 10 years ago - 1 comment
Labels: new, data, enzymedb

#21 - dependencies, methods and building graphs

Issue - State: closed - Opened by eparejatobes over 10 years ago - 2 comments
Labels: question, conf, 2 - in progress, model

#20 - Problem with indexes and special characters such as underscores

Issue - State: closed - Opened by pablopareja over 10 years ago - 1 comment

#19 - How to retrieve the String holding the name of a Relationship type?

Issue - State: closed - Opened by pablopareja over 10 years ago - 3 comments

#17 - Multi-valued properties with new paradigm

Issue - State: closed - Opened by pablopareja over 10 years ago - 14 comments

#16 - MolecularFunction, BiologicalProcess and CellularComponent relationships

Issue - State: closed - Opened by pablopareja over 10 years ago - 4 comments

#15 - Problems with index querying

Issue - State: closed - Opened by pablopareja over 10 years ago - 5 comments

#14 - new data model - GO

Pull Request - State: closed - Opened by eparejatobes over 10 years ago - 5 comments
Labels: new, data, model

#13 - Term or GoTerm?

Issue - State: closed - Opened by pablopareja over 10 years ago - 3 comments

#12 - update to the new data model

Pull Request - State: closed - Opened by eparejatobes over 10 years ago

#11 - Did you know about this? (Faster-Deep-Traversals)

Issue - State: closed - Opened by pablopareja almost 11 years ago - 6 comments
Labels: feature

#10 - Tests

Issue - State: open - Opened by laughedelic almost 11 years ago - 3 comments
Labels: enhancement

#9 - Try to make GIs as nodes

Pull Request - State: closed - Opened by laughedelic almost 11 years ago - 4 comments
Labels: feature

#8 - Relationships/properties/nodes definition

Issue - State: closed - Opened by pablopareja almost 11 years ago - 15 comments
Labels: enhancement, feature

#7 - Making import faster

Issue - State: closed - Opened by laughedelic almost 11 years ago - 4 comments
Labels: enhancement

#6 - Taxonomy GI ids and old tax ids should be multiple-value properties

Pull Request - State: closed - Opened by laughedelic almost 11 years ago
Labels: bug

#5 - Push permissions

Issue - State: closed - Opened by laughedelic almost 11 years ago - 2 comments

#4 - Problem when publishing from sbt

Issue - State: closed - Opened by pablopareja almost 11 years ago - 2 comments

#3 - optimize titandb for our read-only scenario

Issue - State: open - Opened by eparejatobes almost 11 years ago
Labels: enhancement

#2 - titandb batch loading - 0.4.1

Issue - State: closed - Opened by eparejatobes almost 11 years ago - 2 comments

#1 - make IDE integration possible

Issue - State: closed - Opened by eparejatobes about 11 years ago - 1 comment
Labels: dev, sbt, conf