bio-phys/MDBenchmark issues and pull requests

#201 - Use compatible upload/download in gh-workflow.

Pull Request - State: closed - Opened by ksebaz 6 months ago

#200 - Fix vulnerability in download action.

Pull Request - State: closed - Opened by ksebaz 6 months ago

#199 - Release 3.0.2

Pull Request - State: closed - Opened by ksebaz almost 2 years ago - 1 comment

#198 - Merge master into develop.

Pull Request - State: closed - Opened by ksebaz almost 2 years ago - 1 comment

#197 - Prepare v3.0.2

Pull Request - State: closed - Opened by ksebaz almost 2 years ago - 1 comment

#196 - Adjust docs to latest changes.

Pull Request - State: closed - Opened by ksebaz about 2 years ago

#195 - Unuse deprecated kwarg 'type' in savefig.

Pull Request - State: closed - Opened by ksebaz about 2 years ago

#194 - MDBenchmark plotting does not work with matplotlib 3.7.3

Issue - State: closed - Opened by balazsfabian about 2 years ago - 2 comments

#193 - Fix plot of projected performance.

Pull Request - State: closed - Opened by ksebaz about 2 years ago - 1 comment

#192 - Fix plot of either gpu or cpu data for version3.

Pull Request - State: closed - Opened by ksebaz about 2 years ago - 1 comment

#191 - build(deps): bump urllib3 from 1.25.9 to 1.26.5

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#190 - build(deps): bump certifi from 2020.4.5.2 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#189 - build(deps): bump pygments from 2.6.1 to 2.7.4

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#188 - build(deps): bump py from 1.8.2 to 1.11.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#187 - build(deps): bump babel from 2.8.0 to 2.9.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#186 - build(deps-dev): bump ipython from 7.15.0 to 7.16.3

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#185 - Update python support

Pull Request - State: open - Opened by ksebaz about 2 years ago - 1 comment

#184 - Pin markupsafe

Pull Request - State: closed - Opened by ksebaz about 2 years ago

#183 - Update deps

Pull Request - State: closed - Opened by ksebaz about 2 years ago - 2 comments

#182 - Add build test

Pull Request - State: closed - Opened by ksebaz about 2 years ago

#181 - Move to gh-actions.

Pull Request - State: closed - Opened by ksebaz about 2 years ago - 1 comment

#180 - Proposed layout for 'multidir' scaling plots

Issue - State: open - Opened by jkoefinger about 2 years ago

#179 - For GPU nodes, include scaling within a single node across GPUs

Issue - State: open - Opened by jkoefinger about 2 years ago - 2 comments

#178 - Ideal scaling for benchmark plots

Issue - State: closed - Opened by jkoefinger about 2 years ago - 2 comments

#177 - Plotting related --no-gpu and --no-cpu flags raise AttributeError

Issue - State: closed - Opened by balazsfabian about 2 years ago - 3 comments

#176 - pip install does not work in a fresh conda environment

Issue - State: closed - Opened by hejung about 2 years ago - 2 comments

#175 - build(deps): bump numpy from 1.18.1 to 1.22.0 in /docs

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#174 - Does not work when installed as documented

Issue - State: closed - Opened by hejung about 3 years ago - 4 comments

#173 - Conflict with collections.py module

Issue - State: open - Opened by almeida85 over 3 years ago

#171 - Wrong version in conda-forge package

Issue - State: closed - Opened by tvery-idris over 4 years ago - 5 comments

#170 - Release 3.0.1

Pull Request - State: closed - Opened by mimischi over 4 years ago - 1 comment

#169 - Merge version-3 into develop

Pull Request - State: closed - Opened by mimischi over 4 years ago

#168 - Run multiple benchmarks per node with GROMACS `-multidir`

Pull Request - State: closed - Opened by ksebaz over 4 years ago - 14 comments

#167 - Multiple simulations per node

Issue - State: closed - Opened by mimischi over 4 years ago - 4 comments
Labels: enhancement

#166 - (docs) Instructions on adding new engines

Pull Request - State: closed - Opened by mimischi over 4 years ago

#165 - Add ranks and threads to templates

Pull Request - State: closed - Opened by mimischi almost 5 years ago - 2 comments