Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / bihealth/varfish-cli issues and pull requests

#86 - feat: conversion from DRAGEN QC to legacy varfish format (#85)

Pull Request - State: open - Opened by holtgrewe about 1 year ago - 1 comment

#84 - chore(deps): update jsonschema requirement from <4.21,>=4.4 to >=4.4,<4.22

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#83 - chore(deps): bump black from 23.12.0 to 23.12.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#82 - chore(deps): bump isort from 5.13.0 to 5.13.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#81 - chore(deps): bump black from 23.11.0 to 23.12.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#80 - chore(deps): bump isort from 5.12.0 to 5.13.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#79 - chore(deps): update jsonschema requirement from <4.20,>=4.4 to >=4.4,<4.21

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#78 - chore(deps): update jsonschema requirement from <4.20,>=4.4 to >=4.4,<4.21

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#77 - chore(deps): bump black from 23.10.1 to 23.11.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#76 - chore(deps): update jsonschema requirement from <4.5,>=4.4 to >=4.4,<4.20

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#75 - chore(deps): update typeguard requirement from <3.0,>=2.13.3 to >=2.13.3,<5.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#74 - chore(deps): update tabulate requirement from <0.9,>=0.8.9 to >=0.8.9,<0.10

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#73 - Extend phenopacket YAML bootstrapping

Issue - State: open - Opened by holtgrewe over 1 year ago

#72 - feat: support for new-style imports (#70)

Pull Request - State: open - Opened by holtgrewe over 1 year ago - 2 comments

#70 - Implement support for new-style imports

Issue - State: open - Opened by holtgrewe over 1 year ago - 3 comments

#69 - docs: installation instructions in manual

Pull Request - State: closed - Opened by holtgrewe over 1 year ago - 1 comment

#68 - docs: updating README, adding terraform docs

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#67 - chore: add codecov.yml

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#66 - refactor: reduce redundancy in error handling

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#65 - feat: migration from attrs to pydantic (#49)

Pull Request - State: closed - Opened by holtgrewe over 1 year ago - 2 comments

#64 - build: .readthedocs.yaml v2

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#63 - chore: bump GitHub action versions

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#62 - chore: add .readthedocs.yml

Pull Request - State: closed - Opened by holtgrewe over 1 year ago - 1 comment

#61 - feat: migrate argparse code to typer (#48)

Pull Request - State: closed - Opened by holtgrewe over 1 year ago - 2 comments

#60 - chore(deps): update cattrs requirement from <2.0,>=1.7.1 to >=1.7.1,<24.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#59 - ci: configure dependabot for scopes

Pull Request - State: closed - Opened by holtgrewe over 1 year ago - 1 comment

#58 - chore(deps): bump tox from 2.9.1 to 4.11.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#57 - chore: add automerge workflow

Pull Request - State: closed - Opened by holtgrewe over 1 year ago - 1 comment

#56 - chore(deps): bump isort from 5.10.1 to 5.12.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#55 - chore(deps): bump black from 22.3.0 to 23.10.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#54 - chore(deps): update jsonschema requirement from <4.5,>=4.4 to >=4.4,<4.20

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 4 comments
Labels: dependencies, python

#53 - chore(deps): update attrs requirement from <22.0,>=21.2.0 to >=21.2.0,<24.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies, python

#52 - chore: some cleanup (includes removal of versioneer)

Pull Request - State: closed - Opened by holtgrewe over 1 year ago - 1 comment

#51 - chore(main): release 0.6.0

Pull Request - State: open - Opened by varfish-bot over 1 year ago - 1 comment
Labels: autorelease: pending

#50 - feat: add "projects project-list" command

Pull Request - State: closed - Opened by holtgrewe over 1 year ago - 1 comment

#49 - Migrate to pydantic rather than attrs

Issue - State: closed - Opened by holtgrewe over 1 year ago

#48 - Migrate argparse code to typer

Issue - State: closed - Opened by holtgrewe over 1 year ago

#47 - chore(main): release 0.5.3

Pull Request - State: closed - Opened by varfish-bot over 1 year ago - 1 comment
Labels: autorelease: tagged

#46 - feat: force release of 0.6

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#45 - ci: use varfish-bot token in BOT_TOKEN of CI

Pull Request - State: closed - Opened by holtgrewe over 1 year ago - 2 comments

#44 - chore: release 0.5.2

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: autorelease: tagged

#43 - fix: allow varfish upload without SV effects

Pull Request - State: closed - Opened by holtgrewe over 1 year ago - 1 comment

#42 - chore: release 0.5.2

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: autorelease: tagged

#41 - chore: release 0.5.2

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#40 - Creating a small var query from a shortcut results in an error

Issue - State: closed - Opened by stolpeo almost 2 years ago - 2 comments

#39 - Listing cases points to wrong URL

Issue - State: closed - Opened by stolpeo almost 2 years ago - 1 comment

#38 - Help manual is missing options

Issue - State: closed - Opened by danidey almost 2 years ago - 1 comment

#37 - fix: Fixing case list API

Pull Request - State: closed - Opened by xiamaz almost 2 years ago - 1 comment

#36 - chore: release 0.5.1

Pull Request - State: closed - Opened by github-actions[bot] about 2 years ago - 1 comment
Labels: autorelease: tagged

#35 - fix: manifest for readme and changelog

Pull Request - State: closed - Opened by holtgrewe about 2 years ago - 1 comment

#34 - docs: fixing CI status badge

Pull Request - State: closed - Opened by holtgrewe about 2 years ago

#33 - chore: release 0.5.0

Pull Request - State: closed - Opened by github-actions[bot] about 2 years ago - 1 comment
Labels: autorelease: tagged

#32 - feat: replace python-Levenshtein with polyleven (#26)

Pull Request - State: closed - Opened by holtgrewe about 2 years ago - 1 comment

#31 - ci: implement release-please (#30)

Pull Request - State: closed - Opened by holtgrewe about 2 years ago - 2 comments

#30 - Implement release-please

Issue - State: closed - Opened by holtgrewe about 2 years ago

#29 - fix: version notation in requirements/base.txt (#28)

Pull Request - State: closed - Opened by your-highness about 2 years ago - 2 comments

#27 - list cases does not work anymore on Berlin Instance

Issue - State: closed - Opened by xiamaz about 2 years ago

#26 - Use polyleven over levensthein

Issue - State: closed - Opened by holtgrewe over 2 years ago

#25 - Adding support for varannos REST API (#24).

Pull Request - State: closed - Opened by holtgrewe over 2 years ago - 1 comment

#24 - Implement CLI for new varannos app

Issue - State: closed - Opened by holtgrewe over 2 years ago

#23 - Preparing v0.3.5 release (#22)

Pull Request - State: closed - Opened by holtgrewe over 2 years ago

#22 - Release v0.3.5

Issue - State: closed - Opened by holtgrewe over 2 years ago

#21 - Allowing to upload per-case gene annotation (#20)

Pull Request - State: closed - Opened by holtgrewe over 2 years ago

#20 - Allow upload per-case gene annotations file

Issue - State: closed - Opened by holtgrewe over 2 years ago

#19 - Implement case detail retrieval endpoint for the API

Pull Request - State: closed - Opened by xiamaz over 2 years ago

#18 - Add get case info to varfish cli

Issue - State: closed - Opened by xiamaz over 2 years ago

#17 - Support new varfish-annotator output for svs (#16).

Pull Request - State: closed - Opened by holtgrewe over 2 years ago - 1 comment

#16 - Latest varfish-{annotator,server} need more columns for

Issue - State: closed - Opened by holtgrewe over 2 years ago
Labels: enhancement

#15 - Release v0.3.3

Issue - State: closed - Opened by holtgrewe over 2 years ago

#14 - Case importer distinguished smallvar and SV DB info files

Pull Request - State: closed - Opened by stolpeo over 2 years ago - 6 comments

#13 - Database info files are not distinguished between Smallvars and SVs

Issue - State: closed - Opened by stolpeo over 2 years ago - 2 comments

#12 - Genome build check method crashes for empty results

Issue - State: closed - Opened by eudesbarbosa over 2 years ago - 1 comment

#11 - CLI switch --no-verify-ssl ignored

Issue - State: closed - Opened by holtgrewe almost 3 years ago

#10 - Update Readme to include installation via pip

Pull Request - State: closed - Opened by xiamaz almost 3 years ago - 3 comments

#9 - 7 variant query rest api

Pull Request - State: closed - Opened by holtgrewe almost 3 years ago

#8 - Consider using OpenStack's pbr library

Issue - State: closed - Opened by holtgrewe almost 3 years ago - 1 comment

#7 - Implement small variant query REST API

Issue - State: closed - Opened by holtgrewe about 3 years ago

#6 - Implement API versioning in varfish-cli

Issue - State: open - Opened by holtgrewe about 3 years ago

#5 - Catch 400 VarFish server response

Issue - State: closed - Opened by stolpeo about 3 years ago - 1 comment

#4 - Bump pip from 9.0.1 to 19.2 in /requirements

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#3 - Add support for project manipulation

Issue - State: open - Opened by holtgrewe almost 4 years ago
Labels: enhancement

#2 - Add documentation

Issue - State: open - Opened by holtgrewe almost 4 years ago
Labels: documentation

#1 - Increase test coverage

Issue - State: closed - Opened by holtgrewe almost 4 years ago - 1 comment
Labels: good first issue, help wanted