bihealth/seqrepo-rs issues and pull requests

#86 - build(deps): update env_logger requirement from 0.10 to 0.11

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies

#85 - build(deps): bump the noodles group with 3 updates

Pull Request - State: open - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#84 - build(deps): update rusqlite requirement from 0.29 to 0.30

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#83 - chore: release 0.9.0

Pull Request - State: closed - Opened by varfish-bot about 1 year ago - 1 comment
Labels: autorelease: tagged

#82 - build(deps): bump the noodles group with 2 updates

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#79 - build(deps): bump the noodles group with 2 updates

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#78 - build(deps): bump the noodles group with 2 updates

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#77 - build(deps): bump the noodles group with 1 update

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#76 - build(deps): bump the noodles group with 1 update

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#75 - chore: release 0.7.0

Pull Request - State: closed - Opened by varfish-bot over 1 year ago - 2 comments
Labels: autorelease: tagged

#74 - build!: add features for disabling sqlite-based implementation

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#73 - Split interface / sqlite implementation into features

Issue - State: closed - Opened by holtgrewe over 1 year ago

#72 - Add issue and PR templates

Issue - State: open - Opened by holtgrewe over 1 year ago

#71 - chore: release 0.6.1

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: autorelease: pending

#70 - ci: use bot token (for varfish-bot) in release-please

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#69 - chore: release 0.6.1

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#68 - build(deps): bump the noodles group with 2 updates

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#67 - chore: group together noodles dependencies in dependabot

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#66 - build(deps): update noodles-core requirement from 0.11 to 0.12

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#65 - build(deps): update noodles-fasta requirement from 0.24 to 0.25

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#64 - chore: release 0.6.0

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#63 - build(deps): update noodles-fasta requirement from 0.23 to 0.24

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#62 - feat: more thread safety

Pull Request - State: closed - Opened by holtgrewe over 1 year ago - 1 comment

#61 - fix: depend on noodles-* rather noodles/features (#60)

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#60 - Switch to depend on noodles-* rather than noodles with features

Issue - State: closed - Opened by holtgrewe over 1 year ago

#59 - build(deps): update noodles requirement from 0.39 to 0.40

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#58 - chore: release 0.5.1

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#57 - fix: removing unused dependencies

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#56 - chore: release 0.5.0

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#55 - feat: losening dependencies

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#54 - build: losen dependencies

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#53 - build(deps): update noodles requirement from 0.38.0 to 0.39.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#52 - build(deps): update noodles requirement from 0.37.0 to 0.38.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#51 - build(deps): update noodles requirement from 0.35.0 to 0.37.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#50 - build(deps): update noodles requirement from 0.35.0 to 0.36.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#49 - chore: release 0.4.0

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#48 - chore: add dependabot automerge

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#47 - ci: disable noodles for dependabot

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#46 - feat: switch from anyhow to thiserr (#45)

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#45 - Use thiserror rather than anyhow

Issue - State: closed - Opened by holtgrewe over 1 year ago

#44 - build(deps): update noodles requirement from 0.34.0 to 0.35.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#43 - chore: add dependabot automerge

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#42 - chore: add Zenodo batch to README

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#41 - build(deps): update noodles requirement from 0.32.0 to 0.34.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#40 - build(deps): update rusqlite requirement from 0.28.0 to 0.29.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#39 - chore: add dependabot.yaml file

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#38 - chore: adding badges to README

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#37 - chore: release 0.3.0

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#36 - feat: moving cli to be an example (#35)

Pull Request - State: closed - Opened by holtgrewe over 1 year ago - 1 comment

#35 - Convert "cli" module to an example

Issue - State: closed - Opened by holtgrewe over 1 year ago

#34 - chore: release 0.2.3

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#33 - fix: print SQL query in trace level only (#32)

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#32 - Make SQL queries print on trace only

Issue - State: closed - Opened by holtgrewe over 1 year ago

#31 - chore: release 0.2.2

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#30 - fix: open options to cache FASTA file

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#29 - docs: compliance with Apache 2.0 license (#28)

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#28 - Apache License Compliance

Issue - State: closed - Opened by holtgrewe almost 2 years ago

#27 - Whole FASTA sequences are read

Issue - State: closed - Opened by holtgrewe almost 2 years ago - 1 comment
Labels: bug

#26 - chore: release 0.2.1

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment
Labels: autorelease: tagged

#25 - fix: do not write out values twice when cache writing (#24)

Pull Request - State: closed - Opened by holtgrewe almost 2 years ago

#24 - Do not write out values twice when cache writing

Issue - State: closed - Opened by holtgrewe almost 2 years ago

#23 - chore: release 0.2.0

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment
Labels: autorelease: tagged

#22 - feat: create cache writing and reading SeqRepo (#21)

Pull Request - State: closed - Opened by holtgrewe almost 2 years ago

#21 - Create CacheWriting and CacheReading variant of SeqRepo

Issue - State: closed - Opened by holtgrewe almost 2 years ago

#20 - chore: set license to Apache 2.0 in Cargo.toml (#18)

Pull Request - State: closed - Opened by holtgrewe almost 2 years ago - 1 comment

#19 - ci: bumping cargo-tarpaulin version

Pull Request - State: closed - Opened by holtgrewe almost 2 years ago - 1 comment

#18 - Set license to Apache in Cargo.toml

Issue - State: closed - Opened by holtgrewe almost 2 years ago

#17 - chore: release 0.1.2

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment
Labels: autorelease: tagged

#16 - fix: Cargo.toml for license-file

Pull Request - State: closed - Opened by holtgrewe almost 2 years ago

#15 - chore: release 0.1.1

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment
Labels: autorelease: tagged

#14 - fix: release 0.1.1 to crates.io

Pull Request - State: closed - Opened by holtgrewe almost 2 years ago

#13 - build: make the cli optional (#11)

Pull Request - State: closed - Opened by holtgrewe almost 2 years ago

#12 - build: make the cli optional (#11)

Pull Request - State: closed - Opened by holtgrewe almost 2 years ago

#11 - Move the cli into its own feature

Issue - State: closed - Opened by holtgrewe almost 2 years ago

#10 - feat: implement "seqrepo-cli export" for demo purposes (#9)

Pull Request - State: closed - Opened by holtgrewe almost 2 years ago

#9 - Implemenet basic export command in seqrepo-cli app

Issue - State: closed - Opened by holtgrewe almost 2 years ago

#8 - feat: implement SeqRepo based on FastaDir and AliasDb (#7)

Pull Request - State: closed - Opened by holtgrewe almost 2 years ago

#7 - Implement SeqRepo based on FastaDir and AliasDb

Issue - State: closed - Opened by holtgrewe almost 2 years ago

#6 - feat: port over (read-only) FastaDir (#5)

Pull Request - State: closed - Opened by holtgrewe almost 2 years ago

#5 - Port over read-only functionality of FastaDir

Issue - State: closed - Opened by holtgrewe almost 2 years ago

#4 - refactor: clippy --fix

Pull Request - State: closed - Opened by holtgrewe almost 2 years ago

#3 - chore: release 0.1.0

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment
Labels: autorelease: tagged

#2 - feat: implement read-only access to aliases sqlite3 db (#1)

Pull Request - State: closed - Opened by holtgrewe almost 2 years ago

#1 - Implement read-only access to the aliases sqlite3 database

Issue - State: closed - Opened by holtgrewe almost 2 years ago

GitHub / bihealth/seqrepo-rs issues and pull requests