Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / bigdatagenomics/gnocchi issues and pull requests

#41 - Cluster performance optimizations

Pull Request - State: closed - Opened by nathanielparke over 7 years ago

#40 - Adding code of contact adapted from the Contributor Convenant, version 1.4.

Pull Request - State: open - Opened by heuermh over 7 years ago - 4 comments

#39 - Updates from cluster

Pull Request - State: closed - Opened by nathanielparke over 7 years ago

#38 - Gnocchi refactor

Pull Request - State: closed - Opened by nathanielparke over 7 years ago - 63 comments

#37 - Namespace change: 'net.fnothaft' -> 'org.bdgenomics'

Pull Request - State: closed - Opened by nathanielparke over 7 years ago

#36 - Logistic site regression rewrite

Pull Request - State: closed - Opened by nathanielparke over 7 years ago - 2 comments

#35 - Regress Phenotypes refactor

Pull Request - State: closed - Opened by nathanielparke over 7 years ago

#34 - Build and load models

Pull Request - State: closed - Opened by nathanielparke over 7 years ago

#33 - Add failsafe plugin for integration testing

Pull Request - State: closed - Opened by massie almost 8 years ago - 4 comments

#33 - Add failsafe plugin for integration testing

Pull Request - State: closed - Opened by massie almost 8 years ago - 4 comments

#32 - Gnocchi Cleanup resolves part of #25

Pull Request - State: closed - Opened by tkdagdelen almost 8 years ago - 2 comments

#30 - make gnocchi-test great again

Issue - State: open - Opened by tkdagdelen almost 8 years ago

#30 - make gnocchi-test great again

Issue - State: open - Opened by tkdagdelen almost 8 years ago

#29 - Generating new vcf test files with real rsIDs

Issue - State: closed - Opened by kunalgosar almost 8 years ago
Labels: in progress!!, undergrads

#28 - Adding annotations to Associations from ClinVar

Issue - State: open - Opened by adgirish almost 8 years ago - 2 comments
Labels: in progress!!, undergrads

#28 - Adding annotations to Associations from ClinVar

Issue - State: open - Opened by adgirish almost 8 years ago - 2 comments
Labels: in progress!!, undergrads

#27 - Update ADAM and Spark versions

Issue - State: open - Opened by tkdagdelen almost 8 years ago

#27 - Update ADAM and Spark versions

Issue - State: open - Opened by tkdagdelen almost 8 years ago

#26 - review tests and add rigor to testing suites where necessary

Issue - State: open - Opened by tkdagdelen almost 8 years ago

#26 - review tests and add rigor to testing suites where necessary

Issue - State: open - Opened by tkdagdelen almost 8 years ago

#25 - Gnocchi cleanup

Issue - State: open - Opened by tkdagdelen almost 8 years ago
Labels: in progress!!

#25 - Gnocchi cleanup

Issue - State: open - Opened by tkdagdelen almost 8 years ago
Labels: in progress!!

#24 - Release Gnocchi Version 0.1.0

Issue - State: open - Opened by tkdagdelen almost 8 years ago

#24 - Release Gnocchi Version 0.1.0

Issue - State: open - Opened by tkdagdelen almost 8 years ago

#23 - LoadGenotypes does not detect existing ADAM Parquet files

Issue - State: open - Opened by p-yang almost 8 years ago
Labels: in progress!!

#23 - LoadGenotypes does not detect existing ADAM Parquet files

Issue - State: open - Opened by p-yang almost 8 years ago
Labels: in progress!!

#22 - Fix genotype filters for missingness, MAF, and genotyping rate

Issue - State: closed - Opened by nathanielparke almost 8 years ago
Labels: in progress!!

#21 - Move to avro objects instead of classes

Issue - State: open - Opened by akmorrow13 almost 8 years ago

#21 - Move to avro objects instead of classes

Issue - State: open - Opened by akmorrow13 almost 8 years ago

#20 - Removed unused files

Pull Request - State: closed - Opened by akmorrow13 almost 8 years ago - 7 comments

#18 - Instrumentation for RegressPhenotypes

Pull Request - State: closed - Opened by nathanielparke almost 8 years ago - 4 comments

#18 - Instrumentation for RegressPhenotypes

Pull Request - State: closed - Opened by nathanielparke almost 8 years ago - 4 comments

#17 - Write filtered phenotypes to a file flag

Pull Request - State: closed - Opened by nathanielparke almost 8 years ago - 3 comments

#17 - Write filtered phenotypes to a file flag

Pull Request - State: closed - Opened by nathanielparke almost 8 years ago - 3 comments

#16 - MAF filter default between plink and gnocchi equal

Issue - State: closed - Opened by nathanielparke almost 8 years ago - 1 comment

#16 - MAF filter default between plink and gnocchi equal

Issue - State: closed - Opened by nathanielparke almost 8 years ago - 1 comment

#15 - Write tests for Save/Load model functionality

Issue - State: closed - Opened by tkdagdelen almost 8 years ago

#15 - Write tests for Save/Load model functionality

Issue - State: closed - Opened by tkdagdelen almost 8 years ago

#14 - Match Plink's Data Cleaning

Issue - State: closed - Opened by nathanielparke almost 8 years ago - 2 comments

#14 - Match Plink's Data Cleaning

Issue - State: closed - Opened by nathanielparke almost 8 years ago - 2 comments

#13 - User Thresholding

Pull Request - State: closed - Opened by nathanielparke almost 8 years ago - 3 comments

#13 - User Thresholding

Pull Request - State: closed - Opened by nathanielparke almost 8 years ago - 3 comments

#12 - Adding CI scripts

Pull Request - State: closed - Opened by fnothaft almost 8 years ago - 34 comments

#12 - Adding CI scripts

Pull Request - State: closed - Opened by fnothaft almost 8 years ago - 34 comments

#11 - Cleaning up parquet file generation in cli tests

Pull Request - State: closed - Opened by tkdagdelen almost 8 years ago

#11 - Cleaning up parquet file generation in cli tests

Pull Request - State: closed - Opened by tkdagdelen almost 8 years ago

#10 - Get CI set up

Issue - State: closed - Opened by fnothaft almost 8 years ago
Labels: enhancement

#10 - Get CI set up

Issue - State: closed - Opened by fnothaft almost 8 years ago
Labels: enhancement

#9 - Edit summary for README.

Pull Request - State: closed - Opened by heuermh about 8 years ago - 1 comment

#9 - Edit summary for README.

Pull Request - State: closed - Opened by heuermh about 8 years ago - 1 comment

#8 - Uncomment/Remove large blocks of code

Issue - State: closed - Opened by akmorrow13 about 8 years ago - 1 comment

#7 - Use org.bdgenomics for package names and groupId

Issue - State: open - Opened by heuermh about 8 years ago

#7 - Use org.bdgenomics for package names and groupId

Issue - State: open - Opened by heuermh about 8 years ago

#6 - Add LICENSE_header.txt and update source file headers

Issue - State: closed - Opened by heuermh about 8 years ago - 1 comment

#6 - Add LICENSE_header.txt and update source file headers

Issue - State: closed - Opened by heuermh about 8 years ago - 1 comment

#5 - Repository cleanup

Issue - State: closed - Opened by heuermh about 8 years ago - 2 comments

#5 - Repository cleanup

Issue - State: closed - Opened by heuermh about 8 years ago - 2 comments

#4 - Fixing file tracking and permissions on executables

Pull Request - State: closed - Opened by devin-petersohn about 8 years ago - 2 comments

#4 - Fixing file tracking and permissions on executables

Pull Request - State: closed - Opened by devin-petersohn about 8 years ago - 2 comments

#3 - git tracking some test files

Issue - State: closed - Opened by devin-petersohn about 8 years ago

#3 - git tracking some test files

Issue - State: closed - Opened by devin-petersohn about 8 years ago

#2 - permissions on bin executables not set to execute

Issue - State: closed - Opened by devin-petersohn about 8 years ago

#1 - Make a Readme

Issue - State: closed - Opened by tkdagdelen about 8 years ago - 1 comment

#1 - Make a Readme

Issue - State: closed - Opened by tkdagdelen about 8 years ago - 1 comment