Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / bigdatagenomics/deca issues and pull requests

#40 - Bizarrely large END position in the output file

Issue - State: open - Opened by lgh2624 over 4 years ago

#39 - Using CRAM files

Issue - State: open - Opened by katherinef over 4 years ago - 2 comments

#38 - Executor heartbeat timed out error message

Issue - State: open - Opened by rajitz almost 5 years ago

#37 - supplying multiple BAM files

Issue - State: open - Opened by rajitz almost 5 years ago - 5 comments

#34 - Update ADAM dependency version to 0.27.0

Issue - State: open - Opened by heuermh almost 6 years ago

#33 - Update ADAM dependency version to 0.27.0

Pull Request - State: open - Opened by heuermh almost 6 years ago - 10 comments

#32 - Transition to Viterbi decking and normalized forward-backward

Pull Request - State: closed - Opened by mlinderm almost 6 years ago - 17 comments

#31 - Accumulated changes to documentation

Pull Request - State: closed - Opened by mlinderm over 6 years ago - 2 comments

#31 - Accumulated changes to documentation

Pull Request - State: closed - Opened by mlinderm over 6 years ago - 2 comments

#30 - Add link to terminal cast video to README

Pull Request - State: closed - Opened by mlinderm about 7 years ago - 2 comments

#30 - Add link to terminal cast video to README

Pull Request - State: closed - Opened by mlinderm about 7 years ago - 2 comments

#29 - Bug fixes for issues #21 and #22

Pull Request - State: closed - Opened by fnothaft about 7 years ago - 2 comments

#28 - Add additional information about benchmarking commands

Pull Request - State: closed - Opened by mlinderm about 7 years ago - 4 comments

#27 - Bump to ADAM 0.23.0 and move netlib into a profile

Pull Request - State: closed - Opened by fnothaft about 7 years ago - 4 comments

#27 - Bump to ADAM 0.23.0 and move netlib into a profile

Pull Request - State: closed - Opened by fnothaft about 7 years ago - 4 comments

#26 - Move netlib into a profile

Issue - State: closed - Opened by fnothaft about 7 years ago - 1 comment

#25 - [DECA-24] Bump to ADAM 0.23.0 SNAPSHOT.

Pull Request - State: closed - Opened by fnothaft about 7 years ago - 2 comments

#24 - Bump to ADAM 0.23.0-SNAPSHOT

Issue - State: closed - Opened by fnothaft about 7 years ago
Labels: enhancement

#23 - Support emitting single base pair coverage

Issue - State: open - Opened by fnothaft about 7 years ago
Labels: enhancement

#22 - Break up CNVs that span multiple contigs

Issue - State: closed - Opened by fnothaft over 7 years ago

#21 - DECA will fail if a single partition is empty

Issue - State: closed - Opened by fnothaft over 7 years ago
Labels: bug

#20 - [DECA-19] Change `make deploy` to `make develop` in README.md

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 2 comments

#20 - [DECA-19] Change `make deploy` to `make develop` in README.md

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 2 comments

#19 - README says make deploy

Issue - State: closed - Opened by fnothaft over 7 years ago
Labels: bug

#19 - README says make deploy

Issue - State: closed - Opened by fnothaft over 7 years ago
Labels: bug

#18 - [DECA-16] Include pip-install instructions for workflows.

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 5 comments

#18 - [DECA-16] Include pip-install instructions for workflows.

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 5 comments

#17 - Bump to ADAM 0.23.0

Issue - State: closed - Opened by fnothaft over 7 years ago

#16 - Update README with bdgenomics.workflows pip install

Issue - State: closed - Opened by fnothaft over 7 years ago

#16 - Update README with bdgenomics.workflows pip install

Issue - State: closed - Opened by fnothaft over 7 years ago

#16 - Update README with bdgenomics.workflows pip install

Issue - State: closed - Opened by fnothaft over 7 years ago

#15 - [DECA-12] Improve I/O bindings.

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 6 comments

#14 - Add cluster command to README along with other edits and reorganization

Pull Request - State: closed - Opened by mlinderm over 7 years ago - 3 comments

#13 - [DECA-9] Add Toil workflow steps to DECA readme.

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 2 comments

#13 - [DECA-9] Add Toil workflow steps to DECA readme.

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 2 comments

#13 - [DECA-9] Add Toil workflow steps to DECA readme.

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 2 comments

#12 - I/O improvements

Issue - State: closed - Opened by fnothaft over 7 years ago

#11 - [DECA-10] Disable debug logging in bin/deca-submit.

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 2 comments

#11 - [DECA-10] Disable debug logging in bin/deca-submit.

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 2 comments

#11 - [DECA-10] Disable debug logging in bin/deca-submit.

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 2 comments

#10 - Disable debug logging in deca-submit

Issue - State: closed - Opened by fnothaft over 7 years ago
Labels: enhancement

#10 - Disable debug logging in deca-submit

Issue - State: closed - Opened by fnothaft over 7 years ago
Labels: enhancement

#10 - Disable debug logging in deca-submit

Issue - State: closed - Opened by fnothaft over 7 years ago
Labels: enhancement

#9 - Add example of how to run using Toil

Issue - State: closed - Opened by fnothaft over 7 years ago

#9 - Add example of how to run using Toil

Issue - State: closed - Opened by fnothaft over 7 years ago

#9 - Add example of how to run using Toil

Issue - State: closed - Opened by fnothaft over 7 years ago

#8 - Add command for running on a Spark cluster

Issue - State: closed - Opened by fnothaft over 7 years ago - 1 comment

#7 - [DECA-6] Improve read depth matrix dimension check message.

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 2 comments

#7 - [DECA-6] Improve read depth matrix dimension check message.

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 2 comments

#7 - [DECA-6] Improve read depth matrix dimension check message.

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 2 comments

#6 - Improve matrix size error message

Issue - State: closed - Opened by fnothaft over 7 years ago

#5 - Add ignored test files missing from repository

Pull Request - State: closed - Opened by mlinderm over 7 years ago

#5 - Add ignored test files missing from repository

Pull Request - State: closed - Opened by mlinderm over 7 years ago

#5 - Add ignored test files missing from repository

Pull Request - State: closed - Opened by mlinderm over 7 years ago

#4 - Forked vs transferred repository

Issue - State: closed - Opened by heuermh over 7 years ago
Labels: wontfix

#4 - Forked vs transferred repository

Issue - State: closed - Opened by heuermh over 7 years ago
Labels: wontfix

#4 - Forked vs transferred repository

Issue - State: closed - Opened by heuermh over 7 years ago
Labels: wontfix

#3 - [DECA-1] Set up continuous integration.

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 9 comments

#3 - [DECA-1] Set up continuous integration.

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 9 comments

#3 - [DECA-1] Set up continuous integration.

Pull Request - State: closed - Opened by fnothaft over 7 years ago - 9 comments

#2 - Set up coveralls

Issue - State: open - Opened by fnothaft over 7 years ago - 1 comment
Labels: enhancement

#2 - Set up coveralls

Issue - State: open - Opened by fnothaft over 7 years ago - 1 comment
Labels: enhancement

#1 - Get CI back into action

Issue - State: closed - Opened by fnothaft over 7 years ago
Labels: enhancement