Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / bigdatagenomics/convert issues and pull requests
#112 - Update htsjdk dependency version to 3.0.4
Pull Request -
State: closed - Opened by heuermh almost 2 years ago
#111 - Update htsjdk dependency version to 3.0.4
Issue -
State: closed - Opened by heuermh almost 2 years ago
#110 - Update bdg-formats dependency version to 1.0.1
Pull Request -
State: closed - Opened by heuermh almost 2 years ago
#109 - Update bdg-formats dependency version to 1.0.1
Issue -
State: closed - Opened by heuermh almost 2 years ago
#108 - Remove deprecated ga4gh packages
Pull Request -
State: closed - Opened by heuermh over 2 years ago
#107 - Update bdg-formats dependency version to 1.0
Issue -
State: closed - Opened by heuermh over 2 years ago
#106 - Remove GA4GH protobuf converters
Issue -
State: closed - Opened by heuermh over 2 years ago
#105 - Deprecate GA4GH protobuf converters
Pull Request -
State: closed - Opened by heuermh over 2 years ago
#104 - Deprecate GA4GH protobuf converters
Issue -
State: closed - Opened by heuermh over 2 years ago
#103 - Remove Travis badge, update Maven version to 3.8.5
Pull Request -
State: closed - Opened by heuermh over 2 years ago
#102 - Migrate CI from Travis to Github Actions
Pull Request -
State: closed - Opened by heuermh over 2 years ago
#101 - Migrate CI from Travis to Github Actions
Issue -
State: closed - Opened by heuermh over 2 years ago
#100 - Roll back guice dependency version to 5.0.1
Pull Request -
State: closed - Opened by heuermh over 2 years ago
#99 - Update guice dependency version to 5.0.2, guava to 31.1-jre
Pull Request -
State: closed - Opened by heuermh over 2 years ago
#98 - Bump protobuf-java from 3.0.0-beta-3 to 3.16.1
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 2 comments
Labels: dependencies
#97 - Update pom.xml url to Github repository
Pull Request -
State: closed - Opened by heuermh almost 3 years ago
#96 - Update pom.xml url to Github repository
Issue -
State: closed - Opened by heuermh almost 3 years ago
#95 - Update bdg-formats dependency version to 0.17.0
Pull Request -
State: closed - Opened by heuermh almost 3 years ago
#94 - Modifying changelog for 0.12.0 release
Pull Request -
State: closed - Opened by heuermh about 3 years ago
#93 - [CONVERT-91] Add transcript effect impact converter
Pull Request -
State: closed - Opened by heuermh about 3 years ago
#92 - [FORMATS-90] Update bdg-formats dependency version to 0.16.0
Pull Request -
State: closed - Opened by heuermh about 3 years ago
#91 - Add transcript effect impact converter
Issue -
State: closed - Opened by heuermh about 3 years ago
#90 - Update bdg-formats dependency version to 0.16.0
Issue -
State: closed - Opened by heuermh about 3 years ago
#89 - Update htsjdk dependency version to 2.24.1, guava to 30.1.1-jre, commons-lang to 3.12
Pull Request -
State: closed - Opened by heuermh over 3 years ago
#88 - Update guice dependency version to 5.0.1, guava to 30.1-jre, junit to 4.13.2.
Pull Request -
State: closed - Opened by heuermh over 3 years ago
#87 - Update htsjdk dependency version to 2.24.0
Pull Request -
State: closed - Opened by heuermh over 3 years ago
#86 - Update maven plugin dependency versions
Pull Request -
State: closed - Opened by heuermh over 3 years ago
#85 - Bump junit from 4.13 to 4.13.1
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies
#84 - Update htsjdk dependency version to 2.23.0
Pull Request -
State: closed - Opened by heuermh about 4 years ago
#83 - Update htsjdk dependency version to 2.22.0
Pull Request -
State: closed - Opened by heuermh over 4 years ago
#82 - Bump slf4j dependency version to 1.7.30
Pull Request -
State: closed - Opened by heuermh over 4 years ago
#81 - Fix javadoc warnings.
Pull Request -
State: closed - Opened by heuermh almost 5 years ago
#80 - [CONVERT-79] Update bdg-formats dependency version to 0.15.0.
Pull Request -
State: closed - Opened by heuermh almost 5 years ago
#79 - Update bdg-formats dependency version to 0.15.0
Issue -
State: closed - Opened by heuermh almost 5 years ago
#78 - Implement VCF record converters
Issue -
State: open - Opened by heuermh almost 5 years ago
#77 - Bump htsjdk dependency version to 2.21.0.
Pull Request -
State: closed - Opened by heuermh almost 5 years ago
#76 - Update bdg-formats dependency version to 0.15.0-SNAPSHOT
Pull Request -
State: closed - Opened by heuermh almost 5 years ago
#75 - [CONVERT-74] Bump bdg-formats dependency version to 0.14.0
Pull Request -
State: closed - Opened by heuermh about 5 years ago
#74 - Bump bdg-formats dependency version to 0.14.0
Issue -
State: closed - Opened by heuermh about 5 years ago
#73 - [CONVERT-72] Bump bdg-formats dependency version to 0.13.0
Pull Request -
State: closed - Opened by heuermh over 5 years ago
#72 - Bump bdg-formats dependency version to 0.13.0
Issue -
State: closed - Opened by heuermh over 5 years ago
#71 - Add SAM record converters, VCF record converter API classes
Pull Request -
State: closed - Opened by heuermh over 5 years ago
- 3 comments
#70 - Update htsjdk dependency version to 2.18.2
Pull Request -
State: closed - Opened by heuermh over 5 years ago
#69 - Update bdg-formats dependency to version 0.12.0.
Pull Request -
State: closed - Opened by heuermh over 5 years ago
#68 - Adding Travis CI badge to readme.
Pull Request -
State: closed - Opened by heuermh over 5 years ago
#67 - Adding Travis CI configuration.
Pull Request -
State: closed - Opened by heuermh over 5 years ago
#66 - Configure Travis for continuous integration
Issue -
State: closed - Opened by heuermh over 5 years ago
#65 - Additional code style fixes.
Pull Request -
State: closed - Opened by heuermh over 5 years ago
#64 - Adding CHANGES.md
Pull Request -
State: closed - Opened by heuermh over 5 years ago
#63 - Release version 0.5.0
Issue -
State: closed - Opened by heuermh over 5 years ago
- 1 comment
#62 - Bump bdg-formats dependency to version 0.12.0
Issue -
State: closed - Opened by heuermh over 5 years ago
#61 - added GA4GH Feature attributes parser
Pull Request -
State: closed - Opened by akmorrow13 over 5 years ago
- 9 comments
#60 - Update maven-surefire-plugin version to 3.0.0-M1.
Pull Request -
State: closed - Opened by heuermh almost 6 years ago
#59 - Unit tests fail due to surefire plugin issue with Debian/Ubuntu Java8
Issue -
State: closed - Opened by heuermh almost 6 years ago
#58 - Update bdg-formats dependency version to 0.11.4.
Pull Request -
State: closed - Opened by heuermh almost 6 years ago
#57 - Release version 0.4.0
Issue -
State: closed - Opened by heuermh almost 6 years ago
- 4 comments
#56 - Add Maven Central and API Documentation link badges.
Pull Request -
State: closed - Opened by heuermh almost 6 years ago
#55 - Adding GA4GH program, read group converters.
Pull Request -
State: closed - Opened by heuermh almost 6 years ago
- 1 comment
#54 - Updating dependency versions, including htsjdk to 2.16.1.
Pull Request -
State: closed - Opened by heuermh almost 6 years ago
#53 - incorporate recordGroupSample into GA4GH schema
Issue -
State: closed - Opened by akmorrow13 almost 6 years ago
- 3 comments
#52 - Add API documentation link and badge
Issue -
State: closed - Opened by heuermh over 6 years ago
#51 - Release version 0.3.0.
Issue -
State: closed - Opened by heuermh over 6 years ago
- 3 comments
#50 - fixed null mapq error for convert-ga4gh
Pull Request -
State: closed - Opened by akmorrow13 over 6 years ago
- 1 comment
#49 - GA4GH Alignment fails if mapq is None
Issue -
State: closed - Opened by akmorrow13 over 6 years ago
- 1 comment
#48 - [CONVERT-47] Bump to HTSJDK 2.13.2.
Pull Request -
State: closed - Opened by heuermh over 6 years ago
#47 - Bump to HTSJDK 2.13.2
Issue -
State: closed - Opened by heuermh over 6 years ago
#46 - Adding code of contact adapted from the Contributor Convenant, version 1.4.
Pull Request -
State: closed - Opened by heuermh almost 7 years ago
#45 - [CONVERT-44] Update bdg-formats dependency to version 0.11.3
Pull Request -
State: closed - Opened by heuermh almost 7 years ago
- 2 comments
#44 - Update bdg-formats dependency to version 0.11.3
Issue -
State: closed - Opened by heuermh almost 7 years ago
#43 - VerifyError in GA4GH AlignmentRecord Conversion
Issue -
State: closed - Opened by akmorrow13 about 7 years ago
- 3 comments
#42 - Minor code style and doc fixes.
Pull Request -
State: closed - Opened by heuermh about 7 years ago
#41 - Fix relative path.
Pull Request -
State: closed - Opened by heuermh about 7 years ago
#40 - Add null guards in ga4gh and fix feature ga4gh converter
Pull Request -
State: closed - Opened by jpdna about 7 years ago
- 2 comments
#39 - fixed problems with feature term
Pull Request -
State: closed - Opened by jpdna about 7 years ago
- 2 comments
#38 - fix doc links
Pull Request -
State: closed - Opened by heuermh about 7 years ago
#38 - fix doc links
Pull Request -
State: closed - Opened by heuermh about 7 years ago
#37 - [CONVERT-26] Rename bdg-convert repo to convert.
Pull Request -
State: closed - Opened by heuermh about 7 years ago
- 1 comment
#37 - [CONVERT-26] Rename bdg-convert repo to convert.
Pull Request -
State: closed - Opened by heuermh about 7 years ago
- 1 comment
#36 - Release version 0.2.0
Issue -
State: closed - Opened by akmorrow13 about 7 years ago
- 2 comments
#35 - Add Variant and genotype call bdg to ga4gh converters
Pull Request -
State: closed - Opened by jpdna about 7 years ago
- 9 comments
#34 - Ga4gh variantcontexttovariant - need help
Pull Request -
State: closed - Opened by jpdna about 7 years ago
#34 - Ga4gh variantcontexttovariant - need help
Pull Request -
State: closed - Opened by jpdna about 7 years ago
#33 - Move unit tests to src/test/java.
Pull Request -
State: closed - Opened by heuermh about 7 years ago
#33 - Move unit tests to src/test/java.
Pull Request -
State: closed - Opened by heuermh about 7 years ago
#32 - Tests for convert-GA4GH module are not trying to run
Issue -
State: closed - Opened by jpdna about 7 years ago
- 2 comments
#32 - Tests for convert-GA4GH module are not trying to run
Issue -
State: closed - Opened by jpdna about 7 years ago
- 2 comments
#31 - Update version to follow major.minor.patch.
Pull Request -
State: closed - Opened by heuermh about 7 years ago
#31 - Update version to follow major.minor.patch.
Pull Request -
State: closed - Opened by heuermh about 7 years ago
#30 - Update version to follow major.minor.patch, i.e. 0.2.0-SNAPSHOT
Issue -
State: closed - Opened by heuermh about 7 years ago
#30 - Update version to follow major.minor.patch, i.e. 0.2.0-SNAPSHOT
Issue -
State: closed - Opened by heuermh about 7 years ago
#29 - Adding multimodule build, migrating bdg-convert-ga4gh repo to new module.
Pull Request -
State: closed - Opened by heuermh about 7 years ago
- 4 comments
#29 - Adding multimodule build, migrating bdg-convert-ga4gh repo to new module.
Pull Request -
State: closed - Opened by heuermh about 7 years ago
- 4 comments
#28 - Refactor Maven modules to separate dependencies
Issue -
State: closed - Opened by heuermh about 7 years ago
#28 - Refactor Maven modules to separate dependencies
Issue -
State: closed - Opened by heuermh about 7 years ago
#27 - Import bdg-convert-ga4gh repository into new Maven module
Issue -
State: closed - Opened by heuermh about 7 years ago
#26 - Drop bdg- prefix from repository name
Issue -
State: closed - Opened by heuermh about 7 years ago
- 2 comments
#26 - Drop bdg- prefix from repository name
Issue -
State: closed - Opened by heuermh about 7 years ago
- 2 comments
#25 - Update bdg-formats dependency version to 0.11.1.
Pull Request -
State: closed - Opened by heuermh over 7 years ago
#24 - Update bdg-formats dependency version to 0.11.0.
Pull Request -
State: closed - Opened by heuermh over 7 years ago
#24 - Update bdg-formats dependency version to 0.11.0.
Pull Request -
State: closed - Opened by heuermh over 7 years ago