Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / bigdatagenomics/convert issues and pull requests

#112 - Update htsjdk dependency version to 3.0.4

Pull Request - State: closed - Opened by heuermh almost 2 years ago

#111 - Update htsjdk dependency version to 3.0.4

Issue - State: closed - Opened by heuermh almost 2 years ago

#110 - Update bdg-formats dependency version to 1.0.1

Pull Request - State: closed - Opened by heuermh almost 2 years ago

#109 - Update bdg-formats dependency version to 1.0.1

Issue - State: closed - Opened by heuermh almost 2 years ago

#108 - Remove deprecated ga4gh packages

Pull Request - State: closed - Opened by heuermh over 2 years ago

#107 - Update bdg-formats dependency version to 1.0

Issue - State: closed - Opened by heuermh over 2 years ago

#106 - Remove GA4GH protobuf converters

Issue - State: closed - Opened by heuermh over 2 years ago

#105 - Deprecate GA4GH protobuf converters

Pull Request - State: closed - Opened by heuermh over 2 years ago

#104 - Deprecate GA4GH protobuf converters

Issue - State: closed - Opened by heuermh over 2 years ago

#103 - Remove Travis badge, update Maven version to 3.8.5

Pull Request - State: closed - Opened by heuermh over 2 years ago

#102 - Migrate CI from Travis to Github Actions

Pull Request - State: closed - Opened by heuermh over 2 years ago

#101 - Migrate CI from Travis to Github Actions

Issue - State: closed - Opened by heuermh over 2 years ago

#100 - Roll back guice dependency version to 5.0.1

Pull Request - State: closed - Opened by heuermh over 2 years ago

#99 - Update guice dependency version to 5.0.2, guava to 31.1-jre

Pull Request - State: closed - Opened by heuermh over 2 years ago

#98 - Bump protobuf-java from 3.0.0-beta-3 to 3.16.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#97 - Update pom.xml url to Github repository

Pull Request - State: closed - Opened by heuermh almost 3 years ago

#96 - Update pom.xml url to Github repository

Issue - State: closed - Opened by heuermh almost 3 years ago

#95 - Update bdg-formats dependency version to 0.17.0

Pull Request - State: closed - Opened by heuermh almost 3 years ago

#94 - Modifying changelog for 0.12.0 release

Pull Request - State: closed - Opened by heuermh about 3 years ago

#93 - [CONVERT-91] Add transcript effect impact converter

Pull Request - State: closed - Opened by heuermh about 3 years ago

#92 - [FORMATS-90] Update bdg-formats dependency version to 0.16.0

Pull Request - State: closed - Opened by heuermh about 3 years ago

#91 - Add transcript effect impact converter

Issue - State: closed - Opened by heuermh about 3 years ago

#90 - Update bdg-formats dependency version to 0.16.0

Issue - State: closed - Opened by heuermh about 3 years ago

#87 - Update htsjdk dependency version to 2.24.0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#86 - Update maven plugin dependency versions

Pull Request - State: closed - Opened by heuermh over 3 years ago

#85 - Bump junit from 4.13 to 4.13.1

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#84 - Update htsjdk dependency version to 2.23.0

Pull Request - State: closed - Opened by heuermh about 4 years ago

#83 - Update htsjdk dependency version to 2.22.0

Pull Request - State: closed - Opened by heuermh over 4 years ago

#82 - Bump slf4j dependency version to 1.7.30

Pull Request - State: closed - Opened by heuermh over 4 years ago

#81 - Fix javadoc warnings.

Pull Request - State: closed - Opened by heuermh almost 5 years ago

#80 - [CONVERT-79] Update bdg-formats dependency version to 0.15.0.

Pull Request - State: closed - Opened by heuermh almost 5 years ago

#79 - Update bdg-formats dependency version to 0.15.0

Issue - State: closed - Opened by heuermh almost 5 years ago

#78 - Implement VCF record converters

Issue - State: open - Opened by heuermh almost 5 years ago

#77 - Bump htsjdk dependency version to 2.21.0.

Pull Request - State: closed - Opened by heuermh almost 5 years ago

#76 - Update bdg-formats dependency version to 0.15.0-SNAPSHOT

Pull Request - State: closed - Opened by heuermh almost 5 years ago

#75 - [CONVERT-74] Bump bdg-formats dependency version to 0.14.0

Pull Request - State: closed - Opened by heuermh about 5 years ago

#74 - Bump bdg-formats dependency version to 0.14.0

Issue - State: closed - Opened by heuermh about 5 years ago

#73 - [CONVERT-72] Bump bdg-formats dependency version to 0.13.0

Pull Request - State: closed - Opened by heuermh over 5 years ago

#72 - Bump bdg-formats dependency version to 0.13.0

Issue - State: closed - Opened by heuermh over 5 years ago

#71 - Add SAM record converters, VCF record converter API classes

Pull Request - State: closed - Opened by heuermh over 5 years ago - 3 comments

#70 - Update htsjdk dependency version to 2.18.2

Pull Request - State: closed - Opened by heuermh over 5 years ago

#69 - Update bdg-formats dependency to version 0.12.0.

Pull Request - State: closed - Opened by heuermh over 5 years ago

#68 - Adding Travis CI badge to readme.

Pull Request - State: closed - Opened by heuermh over 5 years ago

#67 - Adding Travis CI configuration.

Pull Request - State: closed - Opened by heuermh over 5 years ago

#66 - Configure Travis for continuous integration

Issue - State: closed - Opened by heuermh over 5 years ago

#65 - Additional code style fixes.

Pull Request - State: closed - Opened by heuermh over 5 years ago

#64 - Adding CHANGES.md

Pull Request - State: closed - Opened by heuermh over 5 years ago

#63 - Release version 0.5.0

Issue - State: closed - Opened by heuermh over 5 years ago - 1 comment

#62 - Bump bdg-formats dependency to version 0.12.0

Issue - State: closed - Opened by heuermh over 5 years ago

#61 - added GA4GH Feature attributes parser

Pull Request - State: closed - Opened by akmorrow13 over 5 years ago - 9 comments

#60 - Update maven-surefire-plugin version to 3.0.0-M1.

Pull Request - State: closed - Opened by heuermh almost 6 years ago

#58 - Update bdg-formats dependency version to 0.11.4.

Pull Request - State: closed - Opened by heuermh almost 6 years ago

#57 - Release version 0.4.0

Issue - State: closed - Opened by heuermh almost 6 years ago - 4 comments

#56 - Add Maven Central and API Documentation link badges.

Pull Request - State: closed - Opened by heuermh almost 6 years ago

#55 - Adding GA4GH program, read group converters.

Pull Request - State: closed - Opened by heuermh almost 6 years ago - 1 comment

#54 - Updating dependency versions, including htsjdk to 2.16.1.

Pull Request - State: closed - Opened by heuermh almost 6 years ago

#53 - incorporate recordGroupSample into GA4GH schema

Issue - State: closed - Opened by akmorrow13 almost 6 years ago - 3 comments

#52 - Add API documentation link and badge

Issue - State: closed - Opened by heuermh over 6 years ago

#51 - Release version 0.3.0.

Issue - State: closed - Opened by heuermh over 6 years ago - 3 comments

#50 - fixed null mapq error for convert-ga4gh

Pull Request - State: closed - Opened by akmorrow13 over 6 years ago - 1 comment

#49 - GA4GH Alignment fails if mapq is None

Issue - State: closed - Opened by akmorrow13 over 6 years ago - 1 comment

#48 - [CONVERT-47] Bump to HTSJDK 2.13.2.

Pull Request - State: closed - Opened by heuermh over 6 years ago

#47 - Bump to HTSJDK 2.13.2

Issue - State: closed - Opened by heuermh over 6 years ago

#46 - Adding code of contact adapted from the Contributor Convenant, version 1.4.

Pull Request - State: closed - Opened by heuermh almost 7 years ago

#45 - [CONVERT-44] Update bdg-formats dependency to version 0.11.3

Pull Request - State: closed - Opened by heuermh almost 7 years ago - 2 comments

#44 - Update bdg-formats dependency to version 0.11.3

Issue - State: closed - Opened by heuermh almost 7 years ago

#43 - VerifyError in GA4GH AlignmentRecord Conversion

Issue - State: closed - Opened by akmorrow13 about 7 years ago - 3 comments

#42 - Minor code style and doc fixes.

Pull Request - State: closed - Opened by heuermh about 7 years ago

#41 - Fix relative path.

Pull Request - State: closed - Opened by heuermh about 7 years ago

#40 - Add null guards in ga4gh and fix feature ga4gh converter

Pull Request - State: closed - Opened by jpdna about 7 years ago - 2 comments

#39 - fixed problems with feature term

Pull Request - State: closed - Opened by jpdna about 7 years ago - 2 comments

#38 - fix doc links

Pull Request - State: closed - Opened by heuermh about 7 years ago

#38 - fix doc links

Pull Request - State: closed - Opened by heuermh about 7 years ago

#37 - [CONVERT-26] Rename bdg-convert repo to convert.

Pull Request - State: closed - Opened by heuermh about 7 years ago - 1 comment

#37 - [CONVERT-26] Rename bdg-convert repo to convert.

Pull Request - State: closed - Opened by heuermh about 7 years ago - 1 comment

#36 - Release version 0.2.0

Issue - State: closed - Opened by akmorrow13 about 7 years ago - 2 comments

#35 - Add Variant and genotype call bdg to ga4gh converters

Pull Request - State: closed - Opened by jpdna about 7 years ago - 9 comments

#34 - Ga4gh variantcontexttovariant - need help

Pull Request - State: closed - Opened by jpdna about 7 years ago

#34 - Ga4gh variantcontexttovariant - need help

Pull Request - State: closed - Opened by jpdna about 7 years ago

#33 - Move unit tests to src/test/java.

Pull Request - State: closed - Opened by heuermh about 7 years ago

#33 - Move unit tests to src/test/java.

Pull Request - State: closed - Opened by heuermh about 7 years ago

#32 - Tests for convert-GA4GH module are not trying to run

Issue - State: closed - Opened by jpdna about 7 years ago - 2 comments

#32 - Tests for convert-GA4GH module are not trying to run

Issue - State: closed - Opened by jpdna about 7 years ago - 2 comments

#31 - Update version to follow major.minor.patch.

Pull Request - State: closed - Opened by heuermh about 7 years ago

#31 - Update version to follow major.minor.patch.

Pull Request - State: closed - Opened by heuermh about 7 years ago

#30 - Update version to follow major.minor.patch, i.e. 0.2.0-SNAPSHOT

Issue - State: closed - Opened by heuermh about 7 years ago

#30 - Update version to follow major.minor.patch, i.e. 0.2.0-SNAPSHOT

Issue - State: closed - Opened by heuermh about 7 years ago

#29 - Adding multimodule build, migrating bdg-convert-ga4gh repo to new module.

Pull Request - State: closed - Opened by heuermh about 7 years ago - 4 comments

#29 - Adding multimodule build, migrating bdg-convert-ga4gh repo to new module.

Pull Request - State: closed - Opened by heuermh about 7 years ago - 4 comments

#28 - Refactor Maven modules to separate dependencies

Issue - State: closed - Opened by heuermh about 7 years ago

#28 - Refactor Maven modules to separate dependencies

Issue - State: closed - Opened by heuermh about 7 years ago

#27 - Import bdg-convert-ga4gh repository into new Maven module

Issue - State: closed - Opened by heuermh about 7 years ago

#26 - Drop bdg- prefix from repository name

Issue - State: closed - Opened by heuermh about 7 years ago - 2 comments

#26 - Drop bdg- prefix from repository name

Issue - State: closed - Opened by heuermh about 7 years ago - 2 comments

#25 - Update bdg-formats dependency version to 0.11.1.

Pull Request - State: closed - Opened by heuermh over 7 years ago

#24 - Update bdg-formats dependency version to 0.11.0.

Pull Request - State: closed - Opened by heuermh over 7 years ago

#24 - Update bdg-formats dependency version to 0.11.0.

Pull Request - State: closed - Opened by heuermh over 7 years ago