bigdatagenomics/cannoli issues and pull requests

#370 - Github Actions deploy snapshot fails

Issue - State: open - Opened by heuermh 3 months ago

#369 - Update container images for bcftools, bedtools, blast, bowtie, etc.

Pull Request - State: closed - Opened by heuermh 3 months ago

#368 - Update bwa container image to 0.7.18--he4a0461_0

Pull Request - State: closed - Opened by heuermh 10 months ago

#367 - Update samtools container image to 1.20--h50ea8bc_0

Pull Request - State: closed - Opened by heuermh 10 months ago

#366 - Update bcftools container image to 1.20--h8b25389_0

Pull Request - State: closed - Opened by heuermh 10 months ago

#365 - Update minimap2 container image to 2.27--he4a0461_1

Pull Request - State: closed - Opened by heuermh 11 months ago

#364 - Modifying changelog for 1.0.1 release

Pull Request - State: closed - Opened by heuermh about 1 year ago

#363 - Update ADAM dependency version to 1.0.1, Spark to 3.3.4, guava to 33.0.0-jre

Pull Request - State: closed - Opened by heuermh about 1 year ago

#362 - Update bcftools and samtools container images to version 1.19

Pull Request - State: closed - Opened by heuermh about 1 year ago

#361 - Update bedtools, blast, minimap2, etc. container images

Pull Request - State: closed - Opened by heuermh over 1 year ago

#360 - Bump spark-core_2.12 from 3.3.2 to 3.4.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 3 comments
Labels: dependencies

#359 - Update container images for blast, bowtie, bowtie2, freebayes, etc.

Pull Request - State: closed - Opened by heuermh almost 2 years ago

#358 - Update Spark dependency version to 3.3.2

Pull Request - State: closed - Opened by heuermh almost 2 years ago

#357 - Update Spark dependency version to 3.3.2

Issue - State: closed - Opened by heuermh almost 2 years ago

#356 - Update Spark dependency version to 3.3.1

Pull Request - State: closed - Opened by heuermh about 2 years ago

#355 - Update bowtie2 container image to 2.5.0--py310h8d7afc0_0

Pull Request - State: closed - Opened by heuermh about 2 years ago

#354 - Update Spark dependency version to 3.3.1

Issue - State: closed - Opened by heuermh over 2 years ago

#353 - Update container images for samtools, bcftools

Pull Request - State: closed - Opened by heuermh over 2 years ago

#352 - Interest in multisample freebayes calling

Issue - State: closed - Opened by colindaven over 2 years ago - 14 comments

#351 - Update Spark dependency version to 3.3.0

Issue - State: closed - Opened by heuermh over 2 years ago - 1 comment

#350 - Update ADAM dependency version to 1.0, spark to 3.2.1, hadoop to 3.3.3

Pull Request - State: closed - Opened by heuermh over 2 years ago

#349 - Update ADAM dependency version to 1.0

Issue - State: closed - Opened by heuermh over 2 years ago

#348 - Use bwa singularity image for README example

Pull Request - State: closed - Opened by heuermh almost 3 years ago

#347 - Find bwa singularity image for README example

Issue - State: closed - Opened by heuermh almost 3 years ago

#346 - Update default container image versions

Pull Request - State: closed - Opened by heuermh almost 3 years ago

#345 - Update blast container image to 2.12.0--hf3cf87c_4

Pull Request - State: closed - Opened by heuermh almost 3 years ago

#344 - Update minimap2 container image to 2.24--h7132678_1

Pull Request - State: closed - Opened by heuermh almost 3 years ago

#343 - Update bcftools and samtools container images

Pull Request - State: closed - Opened by heuermh almost 3 years ago

#343 - Update bcftools and samtools container images

Pull Request - State: closed - Opened by heuermh almost 3 years ago

#342 - Update default container image versions

Pull Request - State: closed - Opened by heuermh about 3 years ago

#342 - Update default container image versions

Pull Request - State: closed - Opened by heuermh about 3 years ago

#342 - Update default container image versions

Pull Request - State: closed - Opened by heuermh about 3 years ago

#341 - Update ADAM dependency version to 0.37.0

Pull Request - State: closed - Opened by heuermh about 3 years ago

#341 - Update ADAM dependency version to 0.37.0

Pull Request - State: closed - Opened by heuermh about 3 years ago

#341 - Update ADAM dependency version to 0.37.0

Pull Request - State: closed - Opened by heuermh about 3 years ago

#340 - Update ADAM dependency version to 0.37.0

Issue - State: closed - Opened by heuermh about 3 years ago

#340 - Update ADAM dependency version to 0.37.0

Issue - State: closed - Opened by heuermh about 3 years ago

#340 - Update ADAM dependency version to 0.37.0

Issue - State: closed - Opened by heuermh about 3 years ago

#339 - Update bowtie2 container image to 2.4.4--py38he5f0661_1

Pull Request - State: closed - Opened by heuermh about 3 years ago

#339 - Update bowtie2 container image to 2.4.4--py38he5f0661_1

Pull Request - State: closed - Opened by heuermh about 3 years ago

#339 - Update bowtie2 container image to 2.4.4--py38he5f0661_1

Pull Request - State: closed - Opened by heuermh about 3 years ago

#338 - Migrate Github Actions JDK from 'adopt' to 'temurin'

Pull Request - State: closed - Opened by heuermh about 3 years ago

#338 - Migrate Github Actions JDK from 'adopt' to 'temurin'

Pull Request - State: closed - Opened by heuermh about 3 years ago

#337 - Migrate Github Actions JDK from 'adopt' to 'temurin'

Issue - State: closed - Opened by heuermh about 3 years ago

#336 - Update vt container image to 0.57721--h41af197_4

Pull Request - State: closed - Opened by heuermh over 3 years ago

#335 - Update star container image to 2.7.9a--h9ee0642_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#335 - Update star container image to 2.7.9a--h9ee0642_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#334 - Update bowtie container image to 1.3.1--py39h176da8b_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#334 - Update bowtie container image to 1.3.1--py39h176da8b_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#334 - Update bowtie container image to 1.3.1--py39h176da8b_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#333 - Update gem3-mapper container image to 3.6.1--h36cd882_9

Pull Request - State: closed - Opened by heuermh over 3 years ago

#333 - Update gem3-mapper container image to 3.6.1--h36cd882_9

Pull Request - State: closed - Opened by heuermh over 3 years ago

#333 - Update gem3-mapper container image to 3.6.1--h36cd882_9

Pull Request - State: closed - Opened by heuermh over 3 years ago

#332 - Update snpeff container image to 5.0--hdfd78af_1

Pull Request - State: closed - Opened by heuermh over 3 years ago

#332 - Update snpeff container image to 5.0--hdfd78af_1

Pull Request - State: closed - Opened by heuermh over 3 years ago

#332 - Update snpeff container image to 5.0--hdfd78af_1

Pull Request - State: closed - Opened by heuermh over 3 years ago

#331 - Update bcftools container image to 1.14--h88f3f91_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#331 - Update bcftools container image to 1.14--h88f3f91_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#331 - Update bcftools container image to 1.14--h88f3f91_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#330 - Update samtools container image to 1.14--hb421002_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#330 - Update samtools container image to 1.14--hb421002_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#330 - Update samtools container image to 1.14--hb421002_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#329 - Update github-changes-maven-plugin version to 1.2

Pull Request - State: closed - Opened by heuermh over 3 years ago

#328 - Update maven plugin dependency versions

Pull Request - State: closed - Opened by heuermh over 3 years ago

#328 - Update maven plugin dependency versions

Pull Request - State: closed - Opened by heuermh over 3 years ago

#328 - Update maven plugin dependency versions

Pull Request - State: closed - Opened by heuermh over 3 years ago

#327 - Add single end bwa-mem2 for aligning reads

Pull Request - State: closed - Opened by heuermh over 3 years ago

#327 - Add single end bwa-mem2 for aligning reads

Pull Request - State: closed - Opened by heuermh over 3 years ago

#327 - Add single end bwa-mem2 for aligning reads

Pull Request - State: closed - Opened by heuermh over 3 years ago

#326 - Consider refactoring for single end, paired end, long reads

Issue - State: closed - Opened by heuermh over 3 years ago - 1 comment

#325 - [CANNOLI-324] Add single end bwa mem for aligning reads

Pull Request - State: closed - Opened by heuermh over 3 years ago

#325 - [CANNOLI-324] Add single end bwa mem for aligning reads

Pull Request - State: closed - Opened by heuermh over 3 years ago

#325 - [CANNOLI-324] Add single end bwa mem for aligning reads

Pull Request - State: closed - Opened by heuermh over 3 years ago

#324 - BWA MEM yields an empty alignment

Issue - State: closed - Opened by yassineS over 3 years ago - 10 comments

#324 - BWA MEM yields an empty alignment

Issue - State: closed - Opened by yassineS over 3 years ago - 10 comments

#324 - BWA MEM yields an empty alignment

Issue - State: closed - Opened by yassineS over 3 years ago - 10 comments

#323 - BWA aln

Issue - State: closed - Opened by yassineS over 3 years ago - 9 comments

#323 - BWA aln

Issue - State: closed - Opened by yassineS over 3 years ago - 9 comments

#323 - BWA aln

Issue - State: closed - Opened by yassineS over 3 years ago - 9 comments

#322 - [CANNOLI-321] Update ADAM dependency version to 0.36.0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#322 - [CANNOLI-321] Update ADAM dependency version to 0.36.0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#322 - [CANNOLI-321] Update ADAM dependency version to 0.36.0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#321 - Update ADAM dependency version to 0.36.0

Issue - State: closed - Opened by heuermh over 3 years ago

#321 - Update ADAM dependency version to 0.36.0

Issue - State: closed - Opened by heuermh over 3 years ago

#321 - Update ADAM dependency version to 0.36.0

Issue - State: closed - Opened by heuermh over 3 years ago

#320 - Update minmap2 container image to version 2.22-h5bf99c6_0

Pull Request - State: closed - Opened by heuermh over 3 years ago - 1 comment

#319 - Update minimap2 to version 2.22

Issue - State: closed - Opened by heuermh over 3 years ago

#319 - Update minimap2 to version 2.22

Issue - State: closed - Opened by heuermh over 3 years ago

#318 - Update bcftools container image to version 1.13--h3a49de5_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#318 - Update bcftools container image to version 1.13--h3a49de5_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#318 - Update bcftools container image to version 1.13--h3a49de5_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#317 - Update samtools container image to version 1.13--h8c37831_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#317 - Update samtools container image to version 1.13--h8c37831_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#316 - Update minimap2 container image to version 2.21--h5bf99c6_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#316 - Update minimap2 container image to version 2.21--h5bf99c6_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#316 - Update minimap2 container image to version 2.21--h5bf99c6_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#315 - Update bowtie2 container image to 2.4.4--py38h72fc82f_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#314 - Update minimap2 container image to version 2.20--h5bf99c6_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#314 - Update minimap2 container image to version 2.20--h5bf99c6_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

#314 - Update minimap2 container image to version 2.20--h5bf99c6_0

Pull Request - State: closed - Opened by heuermh over 3 years ago

GitHub / bigdatagenomics/cannoli issues and pull requests