Ecosyste.ms: Issues

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GitHub / bigbio/DLEAMSE issues and pull requests

#51 - Bump torch from 1.0.0 to 1.13.1

Pull Request - State: open - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#50 - Bump numpy from 1.18.1 to 1.22.0

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#49 - Bump numpy from 1.18.1 to 1.21.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 2 comments
Labels: dependencies

#48 - Add gleamse model train and test code (including data)...

Pull Request - State: closed - Opened by XiYang-Luo about 2 years ago

#47 - Hope to get the training code of DLEAMSE

Issue - State: closed - Opened by Peggyying about 2 years ago - 1 comment

#46 - Do you still have the data of this 7M spectra

Issue - State: open - Opened by XiYang-Luo over 2 years ago

#45 - CLUSTER PLOT DRAWING

Pull Request - State: closed - Opened by XiYang-Luo over 3 years ago

#44 - minor changes

Pull Request - State: closed - Opened by ypriverol almost 4 years ago

#43 - 20200909-19:53-xiyang-test to function 2

Pull Request - State: closed - Opened by XiYang-Luo almost 4 years ago - 1 comment

#42 - auto-range-search & one-stop range-search

Pull Request - State: closed - Opened by XiYang-Luo almost 4 years ago - 1 comment

#41 - remove .npy file

Pull Request - State: closed - Opened by XiYang-Luo almost 4 years ago

#40 - Search based on peak list files

Issue - State: closed - Opened by ypriverol almost 4 years ago
Labels: enhancement

#39 - Test unidentified spectra with human database

Issue - State: open - Opened by ypriverol almost 4 years ago
Labels: documentation, enhancement

#38 - Changes in the README

Pull Request - State: closed - Opened by ypriverol almost 4 years ago

#36 - update tests/dleamse_tests.py script & pass the test on GitHub Actions

Pull Request - State: closed - Opened by XiYang-Luo almost 4 years ago - 1 comment

#35 - Tests created

Pull Request - State: closed - Opened by ypriverol almost 4 years ago

#34 - Modified dleamse_ encode_ and_ embed.py file

Pull Request - State: closed - Opened by XiYang-Luo almost 4 years ago

#33 - Small test dataset

Issue - State: closed - Opened by ypriverol almost 4 years ago
Labels: bug, enhancement, help wanted

#32 - Tests created

Pull Request - State: closed - Opened by ypriverol almost 4 years ago

#31 - added nprob option for index searcher

Pull Request - State: closed - Opened by XiYang-Luo about 4 years ago

#30 - Errors in results.

Issue - State: closed - Opened by ypriverol about 4 years ago - 3 comments
Labels: bug, enhancement, question

#29 - minor code style changes

Pull Request - State: closed - Opened by ypriverol about 4 years ago

#28 - Some errors and checking we need to perform

Issue - State: closed - Opened by ypriverol about 4 years ago - 6 comments
Labels: bug, enhancement, help wanted

#27 - Merge with master

Pull Request - State: closed - Opened by ypriverol about 4 years ago

#26 - minor changes in versions

Pull Request - State: closed - Opened by ypriverol about 4 years ago

#25 - requirements updated

Pull Request - State: closed - Opened by ypriverol about 4 years ago

#24 - minor changes

Pull Request - State: closed - Opened by ypriverol about 4 years ago

#23 - remove failing actions

Pull Request - State: closed - Opened by ypriverol about 4 years ago

#22 - github workflows addapted

Pull Request - State: closed - Opened by ypriverol about 4 years ago

#21 - major refactoring of the project.

Pull Request - State: closed - Opened by ypriverol about 4 years ago

#20 - major changes in the structure of the project

Pull Request - State: closed - Opened by ypriverol about 4 years ago

#19 - minor clean of the code

Pull Request - State: closed - Opened by ypriverol about 4 years ago

#18 - move tmp to mslookup.py

Pull Request - State: closed - Opened by ypriverol about 4 years ago

#17 - Small changes

Pull Request - State: closed - Opened by ypriverol over 4 years ago

#16 - Minor changes in the code including clean

Pull Request - State: closed - Opened by ypriverol over 4 years ago
Labels: enhancement, help wanted

#15 - minor changes

Pull Request - State: closed - Opened by ypriverol over 4 years ago

#14 - PRIDE internal spectrum json file format

Issue - State: closed - Opened by ypriverol over 4 years ago
Labels: enhancement

#13 - Minor changes in the code - naming conventions etc

Pull Request - State: closed - Opened by ypriverol over 4 years ago

#12 - Some minor changes in the structure

Pull Request - State: closed - Opened by ypriverol over 4 years ago

#11 - Another no difficult idea.

Issue - State: closed - Opened by ypriverol over 4 years ago - 1 comment

#10 - Add support for mzML

Issue - State: closed - Opened by ypriverol over 4 years ago - 1 comment

#9 - Some priorities

Issue - State: closed - Opened by ypriverol over 4 years ago - 1 comment

#7 - Another data model inside the source folder

Issue - State: closed - Opened by ypriverol over 4 years ago

#6 - Data inside the code

Issue - State: closed - Opened by ypriverol over 4 years ago

#5 - Picture in the code

Issue - State: closed - Opened by ypriverol over 4 years ago - 1 comment

#4 - We should try larger datasets

Issue - State: closed - Opened by ypriverol over 4 years ago - 2 comments

#3 - DLEAMSE/mslookup - Update the documentation

Issue - State: open - Opened by ypriverol over 4 years ago
Labels: documentation, enhancement

#2 - Create a bioconda package

Issue - State: closed - Opened by ypriverol over 4 years ago - 1 comment

#1 - LICENSE added to the repo

Pull Request - State: closed - Opened by ypriverol over 4 years ago