bids-standard/pybv issues and pull requests

#122 - support reading impedance values from VHDR

Issue - State: open - Opened by sappelhoff 12 days ago

#121 - DOC - point to FieldTrip public API rather than private functions

Pull Request - State: closed - Opened by robertoostenveld about 1 month ago

#120 - Remove MNE export

Pull Request - State: closed - Opened by cbrnr 7 months ago - 15 comments

#119 - Why is `_export_mne_raw()` private?

Issue - State: closed - Opened by cbrnr 7 months ago - 3 comments

#118 - Support arbitrary markers

Pull Request - State: open - Opened by cbrnr 7 months ago - 4 comments

#117 - Fix pre-commit instructions in CONTRIBUTING

Pull Request - State: closed - Opened by cbrnr 8 months ago - 1 comment

#116 - Use pyproject.toml

Pull Request - State: closed - Opened by cbrnr 8 months ago - 3 comments

#115 - Replace flake8/isort/black with ruff

Pull Request - State: closed - Opened by cbrnr 8 months ago - 1 comment

#114 - Bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#113 - Bump actions/upload-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#112 - Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#111 - Add `verbose` parameter

Issue - State: open - Opened by sappelhoff 10 months ago
Labels: enhancement, impact:medium, effort:medium

#110 - Negative Event Onsets

Issue - State: closed - Opened by behinger 11 months ago - 8 comments

#109 - misc maint

Pull Request - State: closed - Opened by sappelhoff 12 months ago - 1 comment

#108 - Add a Read the Docs configuration file (fix RTD build job)

Pull Request - State: closed - Opened by musicinmybrain about 1 year ago - 1 comment

#107 - Add Benjamin Beasley (@musicinmybrain) to CITATION.cff

Pull Request - State: closed - Opened by musicinmybrain about 1 year ago

#106 - Do not distribute the specification PDF in sdists

Pull Request - State: closed - Opened by musicinmybrain about 1 year ago - 1 comment

#105 - Replace deprecated mne.utils.requires_version

Pull Request - State: closed - Opened by musicinmybrain about 1 year ago - 3 comments

#104 - Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#103 - Support strings for marker descriptions

Issue - State: open - Opened by cbrnr almost 2 years ago - 7 comments
Labels: enhancement, impact:medium, effort:medium

#102 - FIX: referenced before assignment of events twidth var

Pull Request - State: closed - Opened by sappelhoff almost 2 years ago - 1 comment

#101 - max_event_descr may be referenced before assignment

Issue - State: closed - Opened by sappelhoff almost 2 years ago
Labels: bug

#100 - check ich "ch_names" present in annotations

Pull Request - State: closed - Opened by eioe almost 2 years ago - 3 comments

#99 - no 'ch_names' in annotations -> Error

Issue - State: closed - Opened by eioe almost 2 years ago - 16 comments
Labels: bug

#98 - Bump actions/setup-python from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#97 - BLACK

Pull Request - State: closed - Opened by sappelhoff about 2 years ago - 1 comment

#96 - Allow event durations == 0

Pull Request - State: closed - Opened by cbrnr about 2 years ago - 3 comments

#95 - updated logical test in _chk_events

Pull Request - State: closed - Opened by compmonks about 2 years ago - 7 comments

#94 - Allow event durations == 0

Issue - State: closed - Opened by cbrnr over 2 years ago - 1 comment
Labels: bug

#93 - allow events descriptions to contain 0 values

Issue - State: closed - Opened by compmonks over 2 years ago - 3 comments

#92 - event duration should be fine if <= n_times, not < n_times

Pull Request - State: closed - Opened by sappelhoff over 2 years ago - 1 comment

#91 - FIX: annotations relative to raw.first_time

Pull Request - State: closed - Opened by sappelhoff over 2 years ago - 1 comment

#90 - FIX: export name

Pull Request - State: closed - Opened by sappelhoff over 2 years ago - 1 comment

#89 - Use black for formatting

Issue - State: closed - Opened by sappelhoff over 2 years ago

#88 - Reading .vmrk as mne.Annotations: Combine events of individual channels

Issue - State: open - Opened by sappelhoff over 2 years ago
Labels: MNE-Python

#87 - Add private function for mne export

Pull Request - State: closed - Opened by sappelhoff over 2 years ago - 1 comment
Labels: enhancement

#86 - Allow passing list of dict as argument to events parameter (=allow writing mne.annotations to VMRK)

Pull Request - State: closed - Opened by sappelhoff over 2 years ago - 6 comments
Labels: enhancement

#85 - Add alternative software

Pull Request - State: closed - Opened by sappelhoff over 2 years ago - 1 comment

#84 - Add a list of alternative packages to documentation

Issue - State: closed - Opened by sappelhoff over 2 years ago
Labels: impact:low, effort:low, DOC

#83 - Add tests (CI) running Matlab/Octave for popular BV readers: FieldTrip, EEGLAB, Brainstorm

Issue - State: open - Opened by sappelhoff over 2 years ago - 3 comments
Labels: maintenance, impact:high, effort:high

#82 - MAINT: Clean up warnings raised by tests

Pull Request - State: closed - Opened by sappelhoff almost 3 years ago - 1 comment
Labels: hacktoberfest-accepted

#81 - update CITATION.cff to 1.2.0

Pull Request - State: closed - Opened by sappelhoff almost 3 years ago - 1 comment
Labels: hacktoberfest-accepted

#80 - Force little-endian format when writing eeg datafile

Pull Request - State: closed - Opened by Aniket-Pradhan about 3 years ago - 22 comments

#79 - Tests fail with big-endian machines

Issue - State: closed - Opened by Aniket-Pradhan about 3 years ago - 34 comments
Labels: bug, impact:high, effort:medium

#78 - [MRG] Improve file handling, add overwrite parameter

Pull Request - State: closed - Opened by sappelhoff about 3 years ago - 3 comments
Labels: enhancement

#77 - enable writing (MNE-Python) annotations

Issue - State: closed - Opened by sappelhoff about 3 years ago - 27 comments
Labels: enhancement, impact:high, effort:medium, API

#76 - Add CITATION.cff file

Pull Request - State: closed - Opened by sappelhoff about 3 years ago - 4 comments

#75 - Add support for reference channel specification

Pull Request - State: closed - Opened by hoechenberger over 3 years ago - 14 comments
Labels: enhancement

#74 - Specify reference channel(s)

Issue - State: closed - Opened by hoechenberger over 3 years ago - 10 comments
Labels: enhancement, impact:low, effort:medium

#73 - ALERT: Potential exposure of PyPI tokens

Issue - State: closed - Opened by effigies over 3 years ago - 3 comments

#72 - The micro sign

Issue - State: closed - Opened by hoechenberger over 3 years ago - 2 comments

#71 - Rename master -> main

Issue - State: closed - Opened by cbrnr over 3 years ago - 6 comments

#70 - Improve Makefile

Pull Request - State: closed - Opened by cbrnr over 3 years ago - 1 comment

#69 - Simplify Makefile rule?

Issue - State: closed - Opened by cbrnr over 3 years ago - 2 comments

#68 - huge amount of misc maint fixes in preparation for 0.5

Pull Request - State: closed - Opened by sappelhoff over 3 years ago - 4 comments

#67 - add check-manifest to CI

Issue - State: closed - Opened by sappelhoff almost 4 years ago

#66 - [MRG] Allows one to pass in a list of units to scale each channel separately

Pull Request - State: closed - Opened by adam2392 almost 4 years ago - 27 comments
Labels: enhancement

#65 - MISC maintenance

Pull Request - State: closed - Opened by sappelhoff almost 4 years ago - 5 comments

#64 - maint: overhaul the format / resolution / unit test

Issue - State: closed - Opened by sappelhoff almost 4 years ago
Labels: maintenance, impact:low, effort:medium

#63 - better file management

Issue - State: closed - Opened by sappelhoff almost 4 years ago
Labels: enhancement, impact:low, effort:low

#62 - FIX: do not write data if it cannot be represented in fmt, given unit and resolution

Pull Request - State: closed - Opened by sappelhoff almost 4 years ago - 1 comment

#61 - Use f-strings

Pull Request - State: closed - Opened by cbrnr almost 4 years ago - 2 comments

#60 - REL 0.4

Issue - State: closed - Opened by sappelhoff almost 4 years ago - 1 comment
Labels: maintenance

#59 - Sampling interval can be float

Pull Request - State: closed - Opened by cbrnr almost 4 years ago - 6 comments
Labels: fix

#58 - API, HUGE: rework "resolution" and follow the consequences

Pull Request - State: closed - Opened by sappelhoff almost 4 years ago - 5 comments

#57 - API: Make write_brainvision take keyword arguments only

Pull Request - State: closed - Opened by sappelhoff almost 4 years ago - 1 comment

#56 - miscellaneous maintenance enhancements

Pull Request - State: closed - Opened by sappelhoff almost 4 years ago - 1 comment
Labels: maintenance

#55 - switch "manual" tempdirs for testing to pytest tmpdir fixtures

Issue - State: closed - Opened by sappelhoff almost 4 years ago
Labels: maintenance

#54 - switch to f-strings

Issue - State: closed - Opened by sappelhoff almost 4 years ago - 2 comments
Labels: maintenance

#53 - FIX: support for for commas in channel names

Pull Request - State: closed - Opened by sappelhoff almost 4 years ago - 4 comments
Labels: fix

#52 - float sampling frequencies are not supported

Issue - State: closed - Opened by sappelhoff almost 4 years ago - 12 comments
Labels: bug

#51 - Currently no support for commas in channel names, event types, and event descriptions

Issue - State: closed - Opened by sappelhoff almost 4 years ago - 1 comment
Labels: bug

#50 - Feature: Allow pybv to scale to several units (accomodate different channel types)

Issue - State: closed - Opened by sappelhoff almost 4 years ago
Labels: enhancement, good first issue

#49 - Wrong resolution in absolute terms is printed to vhdr

Issue - State: closed - Opened by sappelhoff almost 4 years ago - 3 comments
Labels: bug

#48 - "resolution" is printed with wrong number of decimals if not in [..., 1e-6, 1e-5, 1e-4, ...]

Issue - State: closed - Opened by sappelhoff almost 4 years ago - 2 comments
Labels: bug

#47 - Auto-convert "greek small letter mu" to micro symbol

Pull Request - State: closed - Opened by sappelhoff almost 4 years ago - 2 comments

#46 - "Units" parameter is not checked for valid units.

Issue - State: closed - Opened by sappelhoff almost 4 years ago

#45 - Roundtrip fails for data in "short" format when writing to "binary_int16"

Issue - State: closed - Opened by sappelhoff almost 4 years ago - 13 comments
Labels: bug

#44 - Let pybv write [coordinates] section to vhdr files

Issue - State: open - Opened by sappelhoff about 4 years ago - 4 comments
Labels: enhancement, impact:medium, effort:medium

#43 - maintenance PR

Pull Request - State: closed - Opened by sappelhoff over 4 years ago - 2 comments

#42 - Fix code (at least testing) for mne==0.20

Issue - State: closed - Opened by sappelhoff over 4 years ago

#41 - MAINT: texts, and reorganization

Pull Request - State: closed - Opened by sappelhoff over 4 years ago - 2 comments

#40 - meas_date is now a datetime.datetime object

Pull Request - State: closed - Opened by cbrnr over 4 years ago - 2 comments

#39 - ENH: Add unit parameter to write_brainvision

Pull Request - State: closed - Opened by cbrnr over 4 years ago - 12 comments

#38 - Set unit to microvolts

Issue - State: closed - Opened by cbrnr over 4 years ago - 3 comments

#37 - PKG: Include LICENSE in sdist

Pull Request - State: closed - Opened by hoechenberger about 5 years ago - 6 comments

#36 - Prepare for next release

Pull Request - State: closed - Opened by cbrnr about 5 years ago - 2 comments

#35 - Prepare for 0.2.0 release

Pull Request - State: closed - Opened by cbrnr about 5 years ago - 2 comments

#34 - New release on PyPI?

Issue - State: closed - Opened by cbrnr about 5 years ago - 18 comments

#33 - Support writing custom event durations

Pull Request - State: closed - Opened by cbrnr about 5 years ago - 15 comments

#32 - Add option to disable writing a meas_date event

Pull Request - State: closed - Opened by cbrnr about 5 years ago - 7 comments

#31 - Exported file contains additional event

Issue - State: closed - Opened by cbrnr about 5 years ago - 5 comments

#30 - Add support for annotations (including duration)

Issue - State: closed - Opened by cbrnr about 5 years ago - 6 comments

#29 - FIX+ENH: Fix indexing in events and add measurement date option to writer

Pull Request - State: closed - Opened by sappelhoff about 5 years ago - 2 comments
Labels: enhancement, fix

#28 - fmt option no longer available for write_brainvision, probable update of README

Issue - State: closed - Opened by alexrockhill about 5 years ago - 3 comments

#27 - potential indexing issue

Issue - State: closed - Opened by sappelhoff about 5 years ago - 3 comments

#26 - Update MNE compatibility to >0.17, fix bug with stimulus integer codes <length 3 in events

Pull Request - State: closed - Opened by sappelhoff about 5 years ago - 3 comments

#25 - minor doc improvements

Pull Request - State: closed - Opened by sappelhoff about 5 years ago - 2 comments

#24 - Writing Events: Whitespace, Digit range, ... interaction with MNE-Python

Issue - State: closed - Opened by sappelhoff over 5 years ago - 3 comments

#23 - speedup CI build through caching

Pull Request - State: closed - Opened by sappelhoff over 5 years ago - 1 comment

GitHub / bids-standard/pybv issues and pull requests