Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / bids-standard/pybids issues and pull requests
#1088 - DOC: Update zenodo.json with new contributer
Pull Request -
State: closed - Opened by cookpa 16 days ago
- 1 comment
#1087 - BUG: symlink dirs treated as files during indexing
Pull Request -
State: closed - Opened by cookpa 19 days ago
- 6 comments
#1086 - Layout does not follow symbolic links to directories in pybids>=0.17.0
Issue -
State: closed - Opened by cookpa 19 days ago
- 1 comment
#1085 - Build(deps): Bump bids-examples from `4460013` to `7c18d68`
Pull Request -
State: closed - Opened by dependabot[bot] 19 days ago
- 1 comment
Labels: dependencies, submodules
#1084 - fix: Create indices with object dtype
Pull Request -
State: closed - Opened by effigies 29 days ago
- 3 comments
#1083 - Build(deps): Bump bids-examples from `b8f7f69` to `7c18d68`
Pull Request -
State: closed - Opened by dependabot[bot] about 1 month ago
- 1 comment
Labels: dependencies, submodules
#1082 - Build(deps): Bump bids-examples from `4460013` to `b8f7f69`
Pull Request -
State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies, submodules
#1081 - [MAINT] transfer test to bids validator
Pull Request -
State: closed - Opened by Remi-Gau about 2 months ago
- 4 comments
#1080 - Build(deps): Bump bids-examples from `ad9db4b` to `4460013`
Pull Request -
State: closed - Opened by dependabot[bot] about 2 months ago
- 1 comment
Labels: dependencies, submodules
#1079 - sqlite3.OperationalError: table associations already exists
Issue -
State: open - Opened by MRIDude about 2 months ago
- 1 comment
#1078 - Build(deps): Bump bids-examples from `401f4cf` to `ad9db4b`
Pull Request -
State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies, submodules
#1077 - parse_file_entities does not return subject if only filename specified
Issue -
State: closed - Opened by me-pic 2 months ago
- 2 comments
#1076 - REL: 0.17.0
Pull Request -
State: closed - Opened by effigies 2 months ago
- 1 comment
#1075 - ENH: Add MRS entities, path patterns
Pull Request -
State: closed - Opened by effigies 2 months ago
- 2 comments
#1074 - ENH: pathlib -> universal_pathlib to enable cloud (and other filesystem) support
Pull Request -
State: closed - Opened by akhanf 2 months ago
- 5 comments
#1073 - Build(deps): Bump bids-examples from `47c4da1` to `401f4cf`
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
- 1 comment
Labels: dependencies, submodules
#1072 - Unable to retrieve json sidecar based on entities of nifti (after replacing `extension`)
Issue -
State: open - Opened by psadil 3 months ago
- 1 comment
#1071 - Build(deps): Bump bids-examples from `47c4da1` to `ea3f7f6`
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
- 1 comment
Labels: dependencies, submodules
#1070 - Getting layout of one subject.
Issue -
State: closed - Opened by MRIDude 3 months ago
- 1 comment
#1069 - MacOS Finder `._*` hidden metadata files cause pybids to crash
Issue -
State: open - Opened by shnizzedy 4 months ago
- 1 comment
#1068 - Build(deps): Bump bids-examples from `47c4da1` to `4f93568`
Pull Request -
State: closed - Opened by dependabot[bot] 4 months ago
- 1 comment
Labels: dependencies, submodules
#1067 - Build(deps): Bump bids-examples from `47c4da1` to `6470461`
Pull Request -
State: closed - Opened by dependabot[bot] 4 months ago
- 1 comment
Labels: dependencies, submodules
#1066 - MNT: Fix typo newly found by codespell
Pull Request -
State: closed - Opened by DimitriPapadopoulos 4 months ago
- 1 comment
#1065 - FIX: No parentheses after assert
Pull Request -
State: closed - Opened by DimitriPapadopoulos 4 months ago
- 2 comments
#1064 - REL: 0.16.5
Pull Request -
State: closed - Opened by effigies 5 months ago
- 6 comments
#1063 - FIX: Filtering in BIDSLayoutIndexer
Pull Request -
State: open - Opened by alperkent 5 months ago
- 2 comments
#1062 - `BIDSLayoutIndexer`'s `**filters` argument not working as expected
Issue -
State: open - Opened by alperkent 5 months ago
- 6 comments
#1061 - [DOC] deal with several warnings and errors in the doc build
Pull Request -
State: closed - Opened by Remi-Gau 5 months ago
- 8 comments
#1060 - [MAINT] add tests to cover ieeg, eeg, dwi
Pull Request -
State: closed - Opened by Remi-Gau 5 months ago
- 1 comment
#1059 - fix(bids-config): Add dwi root sbref, missing dwi entities to path patterns
Pull Request -
State: closed - Opened by bpinsard 5 months ago
- 2 comments
#1058 - dwi sbref, dwi entities, and TB1* top-level json missing in pybids config.
Issue -
State: closed - Opened by bpinsard 5 months ago
- 3 comments
#1057 - MNT: Add Python 3.12 support
Pull Request -
State: closed - Opened by effigies 5 months ago
- 1 comment
#1056 - sqlalchemy crash
Issue -
State: closed - Opened by bpinsard 5 months ago
- 5 comments
#1055 - MNT: Use tox to simplify testing environment setup
Pull Request -
State: closed - Opened by effigies 5 months ago
- 6 comments
#1054 - Build(deps): Bump bids-examples from `eff47f1` to `47c4da1`
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies, submodules
#1053 - Build(deps): Bump scipy from 1.5 to 1.11.1
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
- 1 comment
Labels: dependencies, python
#1052 - Build(deps): Bump bids-examples from `eff47f1` to `80937c4`
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
- 1 comment
Labels: dependencies, submodules
#1051 - Build(deps): Bump peaceiris/actions-gh-pages from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
- 3 comments
Labels: dependencies, github_actions
#1050 - UnboundLocalError when using BIDSLayout with specific indexer
Issue -
State: closed - Opened by alperkent 6 months ago
#1049 - Handling FileNotFoundError in BIDSLayout Initialization when is_derivative=True and validate=False, also resolves #1050
Pull Request -
State: closed - Opened by alperkent 6 months ago
- 1 comment
#1048 - TypeError: Expected maxsize to be an integer or None
Issue -
State: closed - Opened by paul-reiners 6 months ago
- 2 comments
#1047 - Build(deps): Bump bids-examples from `eff47f1` to `711be5b`
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
- 1 comment
Labels: dependencies, submodules
#1046 - Update indexer to treat .zarr as files not dirs
Pull Request -
State: closed - Opened by akhanf 7 months ago
- 2 comments
#1045 - Build(deps): Bump bids-examples from `eff47f1` to `0d60f73`
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
- 1 comment
Labels: dependencies, submodules
#1044 - Inherited metadata overrides immediate metadata for multi-echo data with same-named single-echo
Issue -
State: open - Opened by tsalo 8 months ago
Labels: bug
#1043 - Collect entity-linked files in get_associations
Issue -
State: open - Opened by tsalo 8 months ago
Labels: enhancement
#1042 - Feature request: support datatype 'perf' for `layout.get()`
Issue -
State: closed - Opened by tomfrankkirk 8 months ago
- 6 comments
#1041 - Build(deps): Bump codecov/codecov-action from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 2 comments
Labels: dependencies, github_actions
#1040 - Feature Request: Restore BIDSLayout Ability to Target a Single sub- Directory
Issue -
State: closed - Opened by dsemanek 9 months ago
- 3 comments
#1039 - Build(deps): Bump bids-examples from `1a000d6` to `eff47f1`
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: dependencies, submodules
#1038 - Build(deps): Bump bids-examples from `b6e5234` to `1a000d6`
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: dependencies, submodules
#1037 - Build(deps): Bump actions/upload-artifact from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: dependencies, github_actions
#1036 - Build(deps): Bump actions/setup-python from 4 to 5
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: dependencies, github_actions
#1035 - REL: 0.16.4
Pull Request -
State: closed - Opened by tsalo 10 months ago
- 1 comment
#1034 - FIX: Ensure values of boolean metadata fields are preserved
Pull Request -
State: closed - Opened by tsalo 10 months ago
- 11 comments
#1033 - All False boolean metadata fields are changed to True
Issue -
State: closed - Opened by tsalo 10 months ago
- 12 comments
Labels: bug
#1032 - Fieldmaps do not find metadata when `part-{mag,phase}` are present and a single sidecar is given
Issue -
State: closed - Opened by oesteban 10 months ago
- 7 comments
Labels: bug
#1031 - Build(deps): Bump bids-examples from `064db11` to `b6e5234`
Pull Request -
State: closed - Opened by dependabot[bot] 11 months ago
- 1 comment
Labels: dependencies, submodules
#1030 - Build(deps): Bump bids-examples from `064db11` to `e073115`
Pull Request -
State: closed - Opened by dependabot[bot] 11 months ago
- 3 comments
Labels: dependencies, submodules
#1029 - [STY] pacify codespell
Pull Request -
State: closed - Opened by Remi-Gau 12 months ago
- 1 comment
#1028 - Build(deps): Bump bids-examples from `d039879` to `064db11`
Pull Request -
State: closed - Opened by dependabot[bot] 12 months ago
- 1 comment
Labels: dependencies, submodules
#1027 - Build(deps): Bump bids-examples from `bfcc5c6` to `d039879`
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies, submodules
#1026 - Bump bids-examples from `502c917` to `bfcc5c6`
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies, submodules
#1025 - Bump bids-examples from `1c30c6e` to `502c917`
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies, submodules
#1024 - Bump actions/checkout from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies, github_actions
#1023 - Clearer BIDSValidation error message
Pull Request -
State: closed - Opened by pierre-nedelec about 1 year ago
- 1 comment
#1022 - BIDSValidation error message doesn't provide path of erroneous `dataset_description.json`
Issue -
State: closed - Opened by pierre-nedelec about 1 year ago
#1021 - Bump bids-examples from `e857597` to `1c30c6e`
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies, submodules
#1020 - Custom configurations are not passed to derivatives indexer
Issue -
State: open - Opened by pierre-nedelec about 1 year ago
- 9 comments
Labels: bug
#1019 - Bump bids-examples from `c557d1f` to `e857597`
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies, submodules
#1018 - [FIX] update config for PET tracer entity
Pull Request -
State: closed - Opened by Remi-Gau about 1 year ago
- 1 comment
#1017 - BIDSValidationError When Using build_path with tracer
Issue -
State: closed - Opened by mcsitter about 1 year ago
- 3 comments
#1016 - FIX: Drop JSON sidecar fields with null values during metadata indexing
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 3 comments
#1015 - BUG: null metadata results in indexing failure
Issue -
State: closed - Opened by effigies about 1 year ago
- 5 comments
#1014 - REL: 0.6.2
Pull Request -
State: closed - Opened by adelavega about 1 year ago
- 1 comment
#1013 - ENH: Speed up indexing by bulk committing to database
Pull Request -
State: closed - Opened by adelavega about 1 year ago
- 16 comments
#1012 - Python3.12: Test fails with ValueError
Issue -
State: open - Opened by penguinpee about 1 year ago
- 2 comments
#1011 - Bump bids-examples from `75968b9` to `c557d1f`
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 2 comments
Labels: dependencies, submodules
#1010 - Bump scipy from 1.5 to 1.10.0
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies, python
#1009 - Include indexer in add_derivatives call
Pull Request -
State: closed - Opened by wasciutto about 1 year ago
- 3 comments
#1008 - Bump bids-examples from `8550641` to `75968b9`
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies, submodules
#1007 - Bump bids-examples from `e96b702` to `8550641`
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies, submodules
#1006 - Bump bids-examples from `e96b702` to `4666d59`
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 2 comments
Labels: dependencies, submodules
#1005 - Bump bids-examples from `d8455af` to `e96b702`
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 2 comments
Labels: dependencies, submodules
#1004 - Bump bids-examples from `d8455af` to `fc080d2`
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 2 comments
Labels: dependencies, submodules
#1003 - Bump bids-examples from `bc36231` to `d8455af`
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies, submodules
#1002 - Bump bids-examples from `bc36231` to `50342d3`
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 2 comments
Labels: dependencies, submodules
#1001 - CI: Use OIDC publishing instead of tokens
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 2 comments
#1000 - Please support formulaic 0.6.0
Issue -
State: open - Opened by musicinmybrain over 1 year ago
- 4 comments
#999 - ENH: Parallel specification of next API
Pull Request -
State: open - Opened by effigies over 1 year ago
- 1 comment
#998 - REL: 0.16.1
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 2 comments
#997 - FIX: Improve parsing of suffix/extension in non-BIDS files
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 5 comments
#996 - CI: Update Python version for doc/sdist/wheel tests
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 1 comment
#995 - MNT: update zenodo
Pull Request -
State: closed - Opened by DimitriPapadopoulos over 1 year ago
- 1 comment
#994 - ENH: Support use of Query enums in filter lists
Pull Request -
State: closed - Opened by pvandyken over 1 year ago
- 1 comment
#993 - Generally can't use `Query.None` in a list of filters, except for with `run`
Issue -
State: closed - Opened by pvandyken over 1 year ago
- 2 comments
#992 - Unable to use `Query.*` on extension
Issue -
State: closed - Opened by pvandyken over 1 year ago
- 2 comments
#991 - Bug/Ambiguous parsing when extension but no suffix present
Issue -
State: closed - Opened by pvandyken over 1 year ago
- 3 comments
#990 - Bump numpy from 1.19 to 1.22.0
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies, python
#989 - RFC: PyBIDS 1.0 layout API
Issue -
State: open - Opened by effigies over 1 year ago
- 8 comments
Labels: discussion