Ecosyste.ms: Issues

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GitHub / bids-standard/bids-validator issues and pull requests

#1980 - [js] Update all npm dependencies (2024-05-26)

Pull Request - State: closed - Opened by depfu[bot] 4 months ago - 1 comment
Labels: depfu

#1979 - TSV column type check overhaul

Issue - State: closed - Opened by rwblair 4 months ago - 6 comments

#1978 - Implement allequal in expression language.

Issue - State: closed - Opened by rwblair 4 months ago - 2 comments

#1977 - feat(schema): Load subject data

Pull Request - State: closed - Opened by effigies 5 months ago - 7 comments

#1976 - chore(codespell): particpants ==> participants

Pull Request - State: closed - Opened by effigies 5 months ago

#1975 - chore(deps): bump tar and lerna

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies, javascript

#1974 - New phenotype filename rule messes with filename rule suggestion heuristic.

Issue - State: closed - Opened by rwblair 5 months ago - 1 comment
Labels: schema

#1973 - Add support for the XPCT suffix in microscopy

Pull Request - State: closed - Opened by chourroutm 5 months ago - 2 comments

#1972 - [js] Update all npm dependencies (2024-05-19)

Pull Request - State: closed - Opened by depfu[bot] 5 months ago - 1 comment
Labels: depfu

#1971 - [js] Update all npm dependencies (2024-05-12)

Pull Request - State: closed - Opened by depfu[bot] 5 months ago - 1 comment
Labels: depfu

#1970 - ci: Fix artifact name for schema web validator deployment

Pull Request - State: open - Opened by nellh 5 months ago - 1 comment

#1970 - ci: Fix artifact name for schema web validator deployment

Pull Request - State: closed - Opened by nellh 5 months ago - 1 comment

#1970 - ci: Fix artifact name for schema web validator deployment

Pull Request - State: open - Opened by nellh 5 months ago - 1 comment

#1969 - Legacy validator permitting (i)EEG files without sidecars

Issue - State: open - Opened by arnodelorme 5 months ago - 3 comments
Labels: bug

#1969 - Legacy validator permitting (i)EEG files without sidecars

Issue - State: open - Opened by arnodelorme 5 months ago - 3 comments
Labels: bug, legacy

#1968 - [js] Update hed-validator 3.13.4 → 3.13.5 (patch)

Pull Request - State: closed - Opened by depfu[bot] 5 months ago - 1 comment
Labels: depfu

#1967 - feat(py): Base Python validator on schema instead of hard-coded regexes

Pull Request - State: open - Opened by effigies 5 months ago - 1 comment
Labels: python, schema

#1967 - feat(py): Base Python validator on schema instead of hard-coded regexes

Pull Request - State: closed - Opened by effigies 5 months ago - 2 comments
Labels: python, schema

#1966 - fix(legacy): Add missing top-level rule for UNIT1 sidecars

Pull Request - State: closed - Opened by bpinsard 5 months ago - 4 comments

#1965 - CI: Update submodules in the usual way

Pull Request - State: closed - Opened by effigies 5 months ago - 1 comment

#1964 - feat(legacy): Check for required fields in PET sidecars.

Pull Request - State: closed - Opened by nellh 5 months ago - 1 comment
Labels: legacy

#1963 - Bundle schema validator and legacy validator into Docker container

Issue - State: open - Opened by yarikoptic 5 months ago - 3 comments

#1962 - chore(deps): bump ejs from 3.1.9 to 3.1.10

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 2 comments
Labels: dependencies, javascript

#1961 - chore(deps): bump bids-validator/spec from `bd08602` to `0950f6d`

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 2 comments
Labels: dependencies, submodules

#1959 - CITATION.cff support

Issue - State: open - Opened by effigies 5 months ago
Labels: enhancement, effort: medium, impact: high, schema

#1959 - CITATION.cff support

Issue - State: closed - Opened by effigies 5 months ago
Labels: enhancement, effort: medium, impact: high, schema

#1958 - Resolve remaining test failures for schema validator

Pull Request - State: closed - Opened by effigies 5 months ago - 1 comment

#1957 - ENH: Validate phenotype filenames

Pull Request - State: closed - Opened by effigies 5 months ago - 1 comment

#1956 - fix(expressions): Make FileTree.contains() return true for directories

Pull Request - State: closed - Opened by effigies 5 months ago - 1 comment
Labels: schema

#1955 - feat: Add values to associations.bvals, fix misnamed variables

Pull Request - State: closed - Opened by effigies 5 months ago - 1 comment
Labels: schema

#1954 - IntendedFor links pointing at `_meg.ds/` directories fail

Issue - State: closed - Opened by effigies 6 months ago
Labels: bug, schema

#1954 - IntendedFor links pointing at `_meg.ds/` directories fail

Issue - State: open - Opened by effigies 6 months ago
Labels: bug, schema

#1953 - [BUG] Validator isn't screaming when PET image files are lacking sidecar files

Issue - State: closed - Opened by bendhouseart 6 months ago - 1 comment
Labels: bug, legacy

#1952 - FIX: Expect multiple rule matches for events.json

Pull Request - State: closed - Opened by effigies 6 months ago - 1 comment
Labels: schema

#1951 - FIX: Start file count at 0

Pull Request - State: closed - Opened by effigies 6 months ago - 1 comment
Labels: schema

#1950 - Fix exists for derivative paths in raw datasets.

Pull Request - State: closed - Opened by rwblair 6 months ago - 1 comment

#1949 - Should we be relaxed about initial `/` for dataset-relative paths?

Issue - State: open - Opened by effigies 6 months ago
Labels: question, schema

#1948 - Update evalInitialColumns to account for recommended columns.

Issue - State: open - Opened by rwblair 6 months ago
Labels: schema

#1947 - IntendedFor links pointing into `derivatives/` directory fail

Issue - State: closed - Opened by effigies 6 months ago - 2 comments
Labels: schema

#1947 - IntendedFor links pointing into `derivatives/` directory fail

Issue - State: closed - Opened by effigies 6 months ago - 2 comments
Labels: schema

#1946 - deno: could --schema be made to take `src/schema` yaml tree as input?

Issue - State: closed - Opened by yarikoptic 6 months ago - 5 comments

#1945 - Tests for some reason expect `/tmp/$USER` to exist?

Issue - State: closed - Opened by yarikoptic 6 months ago - 2 comments
Labels: schema

#1944 - fix: Set deno validator exit code on errors

Pull Request - State: closed - Opened by nellh 6 months ago - 1 comment
Labels: schema

#1943 - deno run on a built bids-validator.js: Attempted to load JSON module without specifying "type"

Issue - State: open - Opened by yarikoptic 6 months ago - 2 comments
Labels: bug, schema

#1942 - Add version into deno bids-validator.js + create shim to run it

Pull Request - State: open - Opened by yarikoptic 6 months ago - 3 comments

#1942 - Create shim to run deno bids-validator

Pull Request - State: open - Opened by yarikoptic 6 months ago - 13 comments
Labels: schema

#1941 - have exists return false on bids-uri check if string doesn't start with 'bids:'

Pull Request - State: closed - Opened by rwblair 6 months ago - 4 comments

#1941 - have exists return false on bids-uri check if string doesn't start with 'bids:'

Pull Request - State: closed - Opened by rwblair 6 months ago - 4 comments

#1940 - Pass on multiple rules.files matches from filenameIdentify to filenameValidate.

Pull Request - State: closed - Opened by rwblair 6 months ago - 1 comment

#1940 - Pass on multiple rules.files matches from filenameIdentify to filenameValidate.

Pull Request - State: closed - Opened by rwblair 6 months ago - 1 comment

#1939 - Have filenameIdentify use datasetContext to determine which filename rules to use.

Pull Request - State: closed - Opened by rwblair 6 months ago - 3 comments

#1939 - Have filenameIdentify use datasetContext to determine which filename rules to use.

Pull Request - State: closed - Opened by rwblair 6 months ago - 3 comments

#1938 - FIX: Load JSON contents into context eagerly

Pull Request - State: closed - Opened by effigies 6 months ago - 1 comment

#1937 - deno: lost --config option?

Issue - State: closed - Opened by yarikoptic 6 months ago - 3 comments
Labels: schema

#1935 - deno testing 101: deno_tests.yml is chronically red, "on purpose"?

Issue - State: closed - Opened by yarikoptic 6 months ago - 4 comments
Labels: schema

#1935 - deno testing 101: deno_tests.yml is chronically red, "on purpose"?

Issue - State: closed - Opened by yarikoptic 6 months ago - 4 comments
Labels: schema

#1934 - deno 101: how to ship/run the "build"?

Issue - State: closed - Opened by yarikoptic 6 months ago - 7 comments

#1933 - Validator requires echo entity to be immediately before "_bold.nii.gz"

Issue - State: closed - Opened by erikglee 6 months ago - 4 comments

#1932 - chore: Remove schema experiment from legacy validator

Pull Request - State: closed - Opened by nellh 6 months ago - 1 comment

#1931 - github action to run bids-validator on bids-examples

Issue - State: open - Opened by yarikoptic 6 months ago
Labels: BEP

#1928 - fix: Preserve key properties when using spread to copy BIDSFile objects in browser environments

Pull Request - State: closed - Opened by nellh 6 months ago - 1 comment
Labels: schema

#1927 - Using the optio --schema master (-s master) is throwing an error

Issue - State: closed - Opened by achilleasNP 6 months ago - 1 comment

#1926 - Warning for samples.tsv column names already defined in the standard.

Issue - State: open - Opened by achilleasNP 6 months ago - 1 comment
Labels: legacy

#1925 - Wrong error message on validation of stim file

Issue - State: closed - Opened by Remi-Gau 6 months ago - 1 comment

#1924 - FIX: Add minimum Python requirement to package metadata

Pull Request - State: closed - Opened by effigies 6 months ago - 5 comments
Labels: bug, python

#1923 - sessions.json

Issue - State: open - Opened by achilleasNP 6 months ago
Labels: bug, legacy

#1922 - chore(deps): bump bids-validator/spec from `5b835b0` to `bd08602`

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies, submodules

#1921 - chore(deps): bump bids-validator/tests/data/bids-examples from `0d60f73` to `711be5b`

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies, submodules

#1920 - Error 1: [Code 0] INTERNAL ERROR

Issue - State: open - Opened by liviafiliz 6 months ago - 1 comment
Labels: bug, legacy

#1919 - [js] Update all npm dependencies (2024-05-07)

Pull Request - State: closed - Opened by depfu[bot] 7 months ago - 4 comments
Labels: depfu

#1918 - Deno validator returns issues without paths for files

Issue - State: closed - Opened by nellh 7 months ago - 1 comment

#1917 - [js] Update all npm dependencies (2024-03-17)

Pull Request - State: closed - Opened by depfu[bot] 7 months ago - 1 comment
Labels: depfu

#1916 - chore(deps): bump follow-redirects from 1.15.5 to 1.15.6

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies, javascript

#1915 - Add vite web validator for the schema validator

Pull Request - State: closed - Opened by nellh 7 months ago - 3 comments

#1914 - Ignore files in _scans.tsv that correspond to entries in .bidsignore (#1366)

Pull Request - State: open - Opened by appukuttan-shailesh 7 months ago - 12 comments
Labels: legacy

#1913 - Bump hed-validator dependency to v3.13.4

Pull Request - State: closed - Opened by happy5214 7 months ago - 2 comments

#1912 - schema: Fixes for web builds

Pull Request - State: closed - Opened by nellh 7 months ago - 1 comment

#1911 - Update bids.spec.js

Pull Request - State: closed - Opened by rwblair 7 months ago - 1 comment

#1910 - schema: Disable import map for Deno validator

Pull Request - State: closed - Opened by nellh 7 months ago - 1 comment

#1909 - Deno validator: set exit code based on validation success/failure

Issue - State: closed - Opened by effigies 7 months ago - 2 comments
Labels: bug, effort: low, impact: high, schema

#1908 - Deno validator doesn't detect absent required files

Issue - State: closed - Opened by bleonar5 7 months ago - 1 comment
Labels: bug, impact: high, schema

#1907 - Deno validator import path error

Issue - State: closed - Opened by effigies 7 months ago - 3 comments
Labels: bug

#1906 - FIX: Update PET metadata dependencies

Pull Request - State: closed - Opened by effigies 7 months ago - 2 comments

#1905 - [js] Update all npm dependencies (2024-03-03)

Pull Request - State: closed - Opened by depfu[bot] 7 months ago - 1 comment
Labels: depfu

#1904 - chore(deps): bump bids-validator/spec from `dc49ee2` to `5b835b0`

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies, submodules

#1903 - chore(deps): bump bids-validator/tests/data/bids-examples from `eff47f1` to `0d60f73`

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, submodules

#1902 - fix(dep): Handle deprecations in deno>=0.214.0

Pull Request - State: closed - Opened by effigies 7 months ago - 1 comment

#1901 - Checking participants against folder names

Issue - State: open - Opened by arnodelorme 7 months ago - 4 comments
Labels: bug, legacy

#1900 - EEG: multiple dataset files can be submitted with different extension

Issue - State: open - Opened by arnodelorme 7 months ago - 7 comments
Labels: bug, schema, legacy

#1899 - [js] Update all npm dependencies (2024-02-25)

Pull Request - State: closed - Opened by depfu[bot] 7 months ago - 1 comment
Labels: depfu

#1899 - [js] Update all npm dependencies (2024-02-25)

Pull Request - State: closed - Opened by depfu[bot] 7 months ago - 1 comment
Labels: depfu

#1898 - Use generic TSV file class from hed-validator package

Pull Request - State: closed - Opened by happy5214 7 months ago - 1 comment

#1897 - PET recon parameter error - need to implement a conditional statement

Issue - State: closed - Opened by CPernet 8 months ago - 6 comments

#1896 - add samples.tsv to noncustom tsv col file

Pull Request - State: closed - Opened by sappelhoff 8 months ago - 1 comment

#1895 - "phenotype.tsv" referenced in part of validator, but this is not a BIDS file

Issue - State: open - Opened by sappelhoff 8 months ago - 1 comment
Labels: legacy