bids-standard/bids-validator issues and pull requests

#1921 - chore(deps): bump bids-validator/tests/data/bids-examples from `0d60f73` to `711be5b`

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies, submodules

#1920 - Error 1: [Code 0] INTERNAL ERROR

Issue - State: open - Opened by liviafiliz 3 months ago - 1 comment
Labels: bug, legacy

#1919 - [js] Update all npm dependencies (2024-05-07)

Pull Request - State: closed - Opened by depfu[bot] 4 months ago - 4 comments
Labels: depfu

#1918 - Deno validator returns issues without paths for files

Issue - State: closed - Opened by nellh 4 months ago - 1 comment

#1917 - [js] Update all npm dependencies (2024-03-17)

Pull Request - State: closed - Opened by depfu[bot] 4 months ago - 1 comment
Labels: depfu

#1916 - chore(deps): bump follow-redirects from 1.15.5 to 1.15.6

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies, javascript

#1915 - Add vite web validator for the schema validator

Pull Request - State: closed - Opened by nellh 4 months ago - 3 comments

#1914 - Ignore files in _scans.tsv that correspond to entries in .bidsignore (#1366)

Pull Request - State: open - Opened by appukuttan-shailesh 4 months ago - 12 comments
Labels: legacy

#1913 - Bump hed-validator dependency to v3.13.4

Pull Request - State: closed - Opened by happy5214 4 months ago - 2 comments

#1912 - schema: Fixes for web builds

Pull Request - State: closed - Opened by nellh 4 months ago - 1 comment

#1911 - Update bids.spec.js

Pull Request - State: closed - Opened by rwblair 4 months ago - 1 comment

#1910 - schema: Disable import map for Deno validator

Pull Request - State: closed - Opened by nellh 4 months ago - 1 comment

#1909 - Deno validator: set exit code based on validation success/failure

Issue - State: closed - Opened by effigies 4 months ago - 2 comments
Labels: bug, effort: low, impact: high, schema

#1908 - Deno validator doesn't detect absent required files

Issue - State: closed - Opened by bleonar5 4 months ago - 1 comment
Labels: bug, impact: high, schema

#1907 - Deno validator import path error

Issue - State: closed - Opened by effigies 4 months ago - 3 comments
Labels: bug

#1906 - FIX: Update PET metadata dependencies

Pull Request - State: closed - Opened by effigies 4 months ago - 2 comments

#1905 - [js] Update all npm dependencies (2024-03-03)

Pull Request - State: closed - Opened by depfu[bot] 4 months ago - 1 comment
Labels: depfu

#1904 - chore(deps): bump bids-validator/spec from `dc49ee2` to `5b835b0`

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies, submodules

#1903 - chore(deps): bump bids-validator/tests/data/bids-examples from `eff47f1` to `0d60f73`

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies, submodules

#1902 - fix(dep): Handle deprecations in deno>=0.214.0

Pull Request - State: closed - Opened by effigies 4 months ago - 1 comment

#1901 - Checking participants against folder names

Issue - State: open - Opened by arnodelorme 4 months ago - 3 comments
Labels: bug

#1900 - EEG: multiple dataset files can be submitted with different extension

Issue - State: open - Opened by arnodelorme 4 months ago - 7 comments
Labels: bug, schema, legacy

#1899 - [js] Update all npm dependencies (2024-02-25)

Pull Request - State: closed - Opened by depfu[bot] 4 months ago - 1 comment
Labels: depfu

#1899 - [js] Update all npm dependencies (2024-02-25)

Pull Request - State: closed - Opened by depfu[bot] 4 months ago - 1 comment
Labels: depfu

#1898 - Use generic TSV file class from hed-validator package

Pull Request - State: closed - Opened by happy5214 4 months ago - 1 comment

#1897 - PET recon parameter error - need to implement a conditional statement

Issue - State: closed - Opened by CPernet 5 months ago - 6 comments

#1896 - add samples.tsv to noncustom tsv col file

Pull Request - State: closed - Opened by sappelhoff 5 months ago - 1 comment

#1895 - "phenotype.tsv" referenced in part of validator, but this is not a BIDS file

Issue - State: open - Opened by sappelhoff 5 months ago - 1 comment
Labels: legacy

#1894 - chore(deps): bump ip from 2.0.0 to 2.0.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies, javascript

#1893 - [js] Update all npm dependencies (2024-02-18)

Pull Request - State: closed - Opened by depfu[bot] 5 months ago - 1 comment
Labels: depfu

#1892 - [js] Update all npm dependencies (2024-02-11)

Pull Request - State: closed - Opened by depfu[bot] 5 months ago - 1 comment
Labels: depfu

#1891 - Skip checkheader for motion.tsv in legacy validator

Pull Request - State: closed - Opened by rwblair 5 months ago - 1 comment

#1890 - [js] Update all npm dependencies (2024-02-04)

Pull Request - State: closed - Opened by depfu[bot] 5 months ago - 1 comment
Labels: depfu

#1889 - motion.tsv files raise warnings and can raise errors due to a lack of column headers

Issue - State: closed - Opened by effigies 5 months ago
Labels: bug

#1888 - fix(deno): Disable lockfile due to schema URL not being versioned

Pull Request - State: closed - Opened by nellh 5 months ago

#1887 - Update Deno dependencies

Pull Request - State: closed - Opened by nellh 5 months ago - 1 comment

#1886 - chore(deps): bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies, github_actions

#1886 - chore(deps): bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies, github_actions

#1885 - chore(deps): bump bids-validator/spec from `c7cabed` to `dc49ee2`

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies, submodules

#1885 - chore(deps): bump bids-validator/spec from `c7cabed` to `dc49ee2`

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies, submodules

#1884 - FIX: Add rules to accept ``part-`` in PEPOLAR fieldmaps

Pull Request - State: open - Opened by oesteban 5 months ago - 1 comment

#1884 - FIX: Add rules to accept ``part-`` in PEPOLAR fieldmaps

Pull Request - State: closed - Opened by oesteban 5 months ago - 1 comment

#1883 - [js] Update all npm dependencies (2024-01-28)

Pull Request - State: closed - Opened by depfu[bot] 5 months ago - 1 comment
Labels: depfu

#1882 - PEPOLAR fieldmaps throwing code 90 (SIDECAR_WITHOUT_DATAFILE) when `part-<value>` is present

Issue - State: closed - Opened by oesteban 6 months ago - 4 comments

#1881 - ENH: Add top-level phase difference fieldmaps JSONs

Pull Request - State: closed - Opened by oesteban 6 months ago - 2 comments

#1880 - FIX: Add pattern to allow `/dir-<label>_dwi.json` files

Pull Request - State: closed - Opened by oesteban 6 months ago - 4 comments

#1879 - deps: Bump hed-validator to 3.13.3

Pull Request - State: closed - Opened by nellh 6 months ago - 2 comments

#1878 - Provide means (result records schema) for external validators (e.g. NWB)

Issue - State: open - Opened by yarikoptic 6 months ago
Labels: enhancement, schema

#1877 - [js] Update all npm dependencies (2024-01-21)

Pull Request - State: closed - Opened by depfu[bot] 6 months ago - 4 comments
Labels: depfu

#1876 - add HED as optional column for other TSV files

Pull Request - State: open - Opened by sappelhoff 6 months ago - 2 comments

#1876 - add HED as optional column for other TSV files

Pull Request - State: closed - Opened by sappelhoff 6 months ago - 4 comments

#1875 - HED column in tsv file should not give a warning

Issue - State: open - Opened by VisLab 6 months ago - 3 comments

#1875 - HED column in tsv file should not give a warning

Issue - State: closed - Opened by VisLab 6 months ago - 3 comments

#1874 - phenotype doesn't appear to allow more than one assessment.

Issue - State: open - Opened by VisLab 6 months ago - 1 comment

#1874 - phenotype doesn't appear to allow more than one assessment.

Issue - State: open - Opened by VisLab 6 months ago - 2 comments

#1873 - chore(deps): bump actions/upload-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 2 comments
Labels: dependencies, github_actions

#1873 - chore(deps): bump actions/upload-artifact from 3 to 4

Pull Request - State: open - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies, github_actions

#1872 - chore(deps): bump actions/download-artifact from 3 to 4

Pull Request - State: open - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies, github_actions

#1872 - chore(deps): bump actions/download-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 2 comments
Labels: dependencies, github_actions

#1872 - chore(deps): bump actions/download-artifact from 3 to 4

Pull Request - State: open - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies, github_actions

#1871 - chore(deps): bump actions/setup-go from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies, github_actions

#1871 - chore(deps): bump actions/setup-go from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies, github_actions

#1870 - [js] Update all npm dependencies (2023-12-24)

Pull Request - State: open - Opened by depfu[bot] 7 months ago
Labels: depfu

#1870 - [js] Update all npm dependencies (2024-01-04)

Pull Request - State: closed - Opened by depfu[bot] 7 months ago - 2 comments
Labels: depfu

#1870 - [js] Update all npm dependencies (2023-12-24)

Pull Request - State: open - Opened by depfu[bot] 7 months ago
Labels: depfu

#1869 - Bump hed-validator to 3.13.1

Pull Request - State: closed - Opened by happy5214 7 months ago - 3 comments

#1868 - hed-validator version 3.13.0

Issue - State: closed - Opened by sappelhoff 7 months ago - 5 comments

#1867 - [js] Update hed-validator 3.12.0 → 3.13.0 (minor)

Pull Request - State: closed - Opened by depfu[bot] 7 months ago - 3 comments
Labels: depfu

#1866 - [js] Update all npm dependencies (2023-12-17)

Pull Request - State: closed - Opened by depfu[bot] 7 months ago - 2 comments
Labels: depfu

#1865 - RF: Expand tests and clean up Python module

Pull Request - State: closed - Opened by effigies 7 months ago - 1 comment

#1864 - disable failing out of spec meg test in schema validator

Pull Request - State: closed - Opened by rwblair 7 months ago - 1 comment

#1863 - Issue 1861 fix regex for BIDS Specification

Pull Request - State: closed - Opened by Slevinski 7 months ago - 1 comment

#1862 - MEG empty files tests not covered by specificaiton.

Issue - State: open - Opened by rwblair 7 months ago

#1861 - BIDS Specification is different than bids-validator for non-parametric structural MR images

Issue - State: open - Opened by Slevinski 7 months ago - 2 comments

#1860 - Loading nifti headers wasn't awaited for some reason in load associations.

Pull Request - State: closed - Opened by rwblair 7 months ago - 1 comment

#1859 - PET / MRI entanglement broken, spooky action at a distance not observed

Issue - State: open - Opened by effigies 7 months ago

#1858 - 3D DWI files produce are not marked as invalid, but fail VOLUME_COUNT_MISMATCH

Issue - State: open - Opened by effigies 7 months ago - 8 comments

#1857 - Update Python library docs

Pull Request - State: closed - Opened by kabilar 7 months ago - 1 comment

#1856 - [js] Update all npm dependencies (2023-12-10)

Pull Request - State: closed - Opened by depfu[bot] 7 months ago - 1 comment
Labels: depfu

#1855 - FIX: Shadow size property of columns object, so it acts as a column

Pull Request - State: closed - Opened by effigies 7 months ago - 3 comments
Labels: schema

#1854 - Validator crashes if .bidsignore is present

Issue - State: closed - Opened by effigies 7 months ago - 2 comments
Labels: bug

#1853 - Warn if files from the same file collection have different shapes

Issue - State: open - Opened by tsalo 7 months ago - 1 comment

#1852 - [js] Update all npm dependencies (2023-12-03)

Pull Request - State: closed - Opened by depfu[bot] 7 months ago - 1 comment
Labels: depfu

#1851 - chore(deps): bump conda-incubator/setup-miniconda from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies, github_actions

#1850 - chore(deps): bump bids-validator/spec from `0fc6c58` to `41241af`

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies, submodules

#1849 - chore(deps): bump bids-validator/tests/data/bids-examples from `633d964` to `b6e5234`

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies, submodules

#1848 - ENH: Ignore all dotfiles

Pull Request - State: closed - Opened by effigies 7 months ago - 2 comments
Labels: schema

#1847 - [js] Update all npm dependencies (2023-11-26)

Pull Request - State: closed - Opened by depfu[bot] 7 months ago - 3 comments
Labels: depfu, needs review

#1846 - [js] Update all npm dependencies (2023-11-19)

Pull Request - State: closed - Opened by depfu[bot] 8 months ago - 1 comment
Labels: depfu

#1845 - Error 2: [Code 32] DWI_MISSING_BVEC and Error 2: [Code 33] DWI_MISSING_BVAL

Issue - State: closed - Opened by anshuhim20 8 months ago - 4 comments

#1844 - feat: Add an export for validateCommand to allow other tools to reuse the validator's argument parsing

Pull Request - State: closed - Opened by nellh 8 months ago - 1 comment

#1843 - [js] Update all npm dependencies (2023-11-12)

Pull Request - State: closed - Opened by depfu[bot] 8 months ago - 1 comment
Labels: depfu

#1842 - Cannot parse TSV file with column header "size"

Issue - State: closed - Opened by effigies 8 months ago - 1 comment

#1841 - FIX: Pass dataset-relative paths to .bidsignore checker

Pull Request - State: closed - Opened by effigies 8 months ago - 4 comments
Labels: needs review

#1840 - [js] Update all npm dependencies (2023-11-05)

Pull Request - State: closed - Opened by depfu[bot] 8 months ago - 1 comment
Labels: depfu

#1839 - ENH: Add column definitions for channels.json

Pull Request - State: closed - Opened by effigies 8 months ago - 7 comments

#1838 - motion: adding SpatialAxes etc to JSON schema

Issue - State: closed - Opened by sappelhoff 8 months ago

#1837 - ENH: Enable structured Level descriptions for TSV columns

Pull Request - State: closed - Opened by effigies 8 months ago - 3 comments

#1836 - chore(deps): bump bids-validator/tests/data/bids-examples from `d039879` to `633d964`

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies, submodules

#1835 - chore(deps): bump bids-validator/spec from `f9cfafa` to `0fc6c58`

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies, submodules

GitHub / bids-standard/bids-validator issues and pull requests