Ecosyste.ms: Issues

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GitHub / bids-standard/bids-validator issues and pull requests

#2005 - chore(deps-dev): bump ws from 8.13.0 to 8.17.1

Pull Request - State: open - Opened by dependabot[bot] 17 days ago - 1 comment
Labels: dependencies, javascript

#2004 - [js] Update all npm dependencies (2024-06-16)

Pull Request - State: closed - Opened by depfu[bot] 19 days ago - 1 comment
Labels: depfu

#2004 - [js] Update all npm dependencies (2024-06-16)

Pull Request - State: closed - Opened by depfu[bot] 19 days ago - 1 comment
Labels: depfu

#2003 - feat(tsv): Accept column definitions in schema entries

Pull Request - State: closed - Opened by effigies 22 days ago - 1 comment

#2002 - chore(deps): bump braces from 3.0.2 to 3.0.3

Pull Request - State: closed - Opened by dependabot[bot] 22 days ago - 1 comment
Labels: dependencies, javascript

#2002 - chore(deps): bump braces from 3.0.2 to 3.0.3

Pull Request - State: open - Opened by dependabot[bot] 22 days ago - 1 comment
Labels: dependencies, javascript

#2001 - deno validator: add option to run only specified list of checks

Issue - State: open - Opened by yarikoptic 23 days ago
Labels: schema

#2000 - Make bids-validator conform to BIDS-App (or execution-spec right away) specification

Issue - State: open - Opened by yarikoptic 23 days ago - 2 comments
Labels: help wanted, schema

#1999 - deno validator: incorrectly claims that README is missing

Issue - State: closed - Opened by yarikoptic 23 days ago - 4 comments
Labels: bug, schema

#1998 - Introspect values in failing checks

Issue - State: open - Opened by yarikoptic 23 days ago - 3 comments
Labels: enhancement, help wanted, schema

#1996 - Provide safe.directory=* for git describe to prevent git freaking out

Pull Request - State: closed - Opened by yarikoptic 23 days ago - 1 comment

#1994 - version reporting in compiled/installed version from url is just "master" or "alpha"

Issue - State: open - Opened by yarikoptic 24 days ago - 1 comment
Labels: schema

#1993 - chore(ci): Tag deno builds with full version, truncate history

Pull Request - State: closed - Opened by effigies 25 days ago - 1 comment

#1992 - fix: Small cleanups from recent test fixes

Pull Request - State: closed - Opened by effigies 25 days ago - 1 comment

#1991 - [js] Update all npm dependencies (2024-06-09)

Pull Request - State: closed - Opened by depfu[bot] 26 days ago - 1 comment
Labels: depfu

#1990 - fix(expr): Use a sensible sorting function for sorted()

Pull Request - State: closed - Opened by effigies 26 days ago - 2 comments
Labels: bug, impact: high

#1989 - fix: OSX and Windows tests

Pull Request - State: closed - Opened by effigies 27 days ago - 2 comments

#1988 - fix(tests): Remove assumptions about tmpfile location, clean up

Pull Request - State: closed - Opened by effigies 27 days ago - 2 comments

#1987 - (deno) TSV type check overhaul.

Pull Request - State: closed - Opened by rwblair 28 days ago - 2 comments

#1986 - Bump hed-validator to 3.14.0

Pull Request - State: closed - Opened by happy5214 28 days ago - 1 comment

#1985 - feat(deno): Retrieve version from import.meta.url or git, when possible

Pull Request - State: closed - Opened by effigies 29 days ago - 4 comments

#1983 - chore(deps): bump bids-validator/spec from `0950f6d` to `70d7750`

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago - 1 comment
Labels: dependencies, submodules

#1982 - feat(schema): Add issue for missing dataset_description.json

Pull Request - State: closed - Opened by effigies about 1 month ago - 1 comment

#1981 - No error/warning when IDs in `participant.tsv` do not match directory names

Issue - State: open - Opened by JuliusWelzel about 1 month ago - 5 comments
Labels: bug, legacy

#1980 - [js] Update all npm dependencies (2024-05-26)

Pull Request - State: closed - Opened by depfu[bot] about 1 month ago - 1 comment
Labels: depfu

#1979 - TSV column type check overhaul

Issue - State: closed - Opened by rwblair about 1 month ago - 6 comments

#1978 - Implement allequal in expression language.

Issue - State: closed - Opened by rwblair about 1 month ago - 2 comments

#1977 - feat(schema): Load subject data

Pull Request - State: closed - Opened by effigies about 1 month ago - 7 comments

#1976 - chore(codespell): particpants ==> participants

Pull Request - State: closed - Opened by effigies about 1 month ago

#1975 - chore(deps): bump tar and lerna

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago - 1 comment
Labels: dependencies, javascript

#1974 - New phenotype filename rule messes with filename rule suggestion heuristic.

Issue - State: open - Opened by rwblair about 1 month ago
Labels: schema

#1973 - Add support for the XPCT suffix in microscopy

Pull Request - State: closed - Opened by chourroutm about 1 month ago - 2 comments

#1972 - [js] Update all npm dependencies (2024-05-19)

Pull Request - State: closed - Opened by depfu[bot] about 2 months ago - 1 comment
Labels: depfu

#1971 - [js] Update all npm dependencies (2024-05-12)

Pull Request - State: closed - Opened by depfu[bot] about 2 months ago - 1 comment
Labels: depfu

#1970 - ci: Fix artifact name for schema web validator deployment

Pull Request - State: closed - Opened by nellh about 2 months ago - 1 comment

#1970 - ci: Fix artifact name for schema web validator deployment

Pull Request - State: open - Opened by nellh about 2 months ago - 1 comment

#1970 - ci: Fix artifact name for schema web validator deployment

Pull Request - State: open - Opened by nellh about 2 months ago - 1 comment

#1969 - Legacy validator permitting (i)EEG files without sidecars

Issue - State: open - Opened by arnodelorme about 2 months ago - 3 comments
Labels: bug, legacy

#1969 - Legacy validator permitting (i)EEG files without sidecars

Issue - State: open - Opened by arnodelorme about 2 months ago - 3 comments
Labels: bug

#1968 - [js] Update hed-validator 3.13.4 → 3.13.5 (patch)

Pull Request - State: closed - Opened by depfu[bot] about 2 months ago - 1 comment
Labels: depfu

#1967 - feat(py): Base Python validator on schema instead of hard-coded regexes

Pull Request - State: open - Opened by effigies about 2 months ago - 1 comment
Labels: python, schema

#1967 - feat(py): Base Python validator on schema instead of hard-coded regexes

Pull Request - State: closed - Opened by effigies about 2 months ago - 2 comments
Labels: python, schema

#1966 - fix(legacy): Add missing top-level rule for UNIT1 sidecars

Pull Request - State: closed - Opened by bpinsard 2 months ago - 4 comments

#1965 - CI: Update submodules in the usual way

Pull Request - State: closed - Opened by effigies 2 months ago - 1 comment

#1964 - feat(legacy): Check for required fields in PET sidecars.

Pull Request - State: closed - Opened by nellh 2 months ago - 1 comment
Labels: legacy

#1962 - chore(deps): bump ejs from 3.1.9 to 3.1.10

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago - 2 comments
Labels: dependencies, javascript

#1961 - chore(deps): bump bids-validator/spec from `bd08602` to `0950f6d`

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago - 2 comments
Labels: dependencies, submodules

#1959 - CITATION.cff support

Issue - State: open - Opened by effigies 2 months ago
Labels: enhancement, effort: medium, impact: high, schema

#1959 - CITATION.cff support

Issue - State: open - Opened by effigies 2 months ago
Labels: enhancement, effort: medium, impact: high, schema

#1958 - Resolve remaining test failures for schema validator

Pull Request - State: closed - Opened by effigies 2 months ago - 1 comment

#1957 - ENH: Validate phenotype filenames

Pull Request - State: closed - Opened by effigies 2 months ago - 1 comment

#1956 - fix(expressions): Make FileTree.contains() return true for directories

Pull Request - State: closed - Opened by effigies 2 months ago - 1 comment
Labels: schema

#1955 - feat: Add values to associations.bvals, fix misnamed variables

Pull Request - State: closed - Opened by effigies 2 months ago - 1 comment
Labels: schema

#1954 - IntendedFor links pointing at `_meg.ds/` directories fail

Issue - State: closed - Opened by effigies 2 months ago
Labels: bug, schema

#1954 - IntendedFor links pointing at `_meg.ds/` directories fail

Issue - State: open - Opened by effigies 2 months ago
Labels: bug, schema

#1953 - [BUG] Validator isn't screaming when PET image files are lacking sidecar files

Issue - State: closed - Opened by bendhouseart 2 months ago - 1 comment
Labels: bug, legacy

#1952 - FIX: Expect multiple rule matches for events.json

Pull Request - State: closed - Opened by effigies 2 months ago - 1 comment
Labels: schema

#1951 - FIX: Start file count at 0

Pull Request - State: closed - Opened by effigies 2 months ago - 1 comment
Labels: schema

#1950 - Fix exists for derivative paths in raw datasets.

Pull Request - State: closed - Opened by rwblair 2 months ago - 1 comment

#1949 - Should we be relaxed about initial `/` for dataset-relative paths?

Issue - State: open - Opened by effigies 2 months ago
Labels: question, schema

#1948 - Update evalInitialColumns to account for recommended columns.

Issue - State: open - Opened by rwblair 2 months ago
Labels: schema

#1947 - IntendedFor links pointing into `derivatives/` directory fail

Issue - State: closed - Opened by effigies 3 months ago - 2 comments
Labels: schema

#1947 - IntendedFor links pointing into `derivatives/` directory fail

Issue - State: closed - Opened by effigies 3 months ago - 2 comments
Labels: schema

#1946 - deno: could --schema be made to take `src/schema` yaml tree as input?

Issue - State: closed - Opened by yarikoptic 3 months ago - 5 comments

#1945 - Tests for some reason expect `/tmp/$USER` to exist?

Issue - State: open - Opened by yarikoptic 3 months ago - 1 comment
Labels: schema

#1944 - fix: Set deno validator exit code on errors

Pull Request - State: closed - Opened by nellh 3 months ago - 1 comment
Labels: schema

#1943 - deno run on a built bids-validator.js: Attempted to load JSON module without specifying "type"

Issue - State: open - Opened by yarikoptic 3 months ago - 2 comments
Labels: bug, schema

#1942 - Add version into deno bids-validator.js + create shim to run it

Pull Request - State: open - Opened by yarikoptic 3 months ago - 3 comments

#1942 - Create shim to run deno bids-validator

Pull Request - State: open - Opened by yarikoptic 3 months ago - 13 comments
Labels: schema

#1941 - have exists return false on bids-uri check if string doesn't start with 'bids:'

Pull Request - State: closed - Opened by rwblair 3 months ago - 4 comments

#1941 - have exists return false on bids-uri check if string doesn't start with 'bids:'

Pull Request - State: closed - Opened by rwblair 3 months ago - 4 comments

#1940 - Pass on multiple rules.files matches from filenameIdentify to filenameValidate.

Pull Request - State: closed - Opened by rwblair 3 months ago - 1 comment

#1940 - Pass on multiple rules.files matches from filenameIdentify to filenameValidate.

Pull Request - State: closed - Opened by rwblair 3 months ago - 1 comment

#1939 - Have filenameIdentify use datasetContext to determine which filename rules to use.

Pull Request - State: closed - Opened by rwblair 3 months ago - 3 comments

#1939 - Have filenameIdentify use datasetContext to determine which filename rules to use.

Pull Request - State: closed - Opened by rwblair 3 months ago - 3 comments

#1938 - FIX: Load JSON contents into context eagerly

Pull Request - State: closed - Opened by effigies 3 months ago - 1 comment

#1937 - deno: lost --config option?

Issue - State: open - Opened by yarikoptic 3 months ago - 3 comments
Labels: schema

#1935 - deno testing 101: deno_tests.yml is chronically red, "on purpose"?

Issue - State: open - Opened by yarikoptic 3 months ago - 4 comments
Labels: schema

#1934 - deno 101: how to ship/run the "build"?

Issue - State: closed - Opened by yarikoptic 3 months ago - 7 comments

#1933 - Validator requires echo entity to be immediately before "_bold.nii.gz"

Issue - State: closed - Opened by erikglee 3 months ago - 4 comments

#1932 - chore: Remove schema experiment from legacy validator

Pull Request - State: closed - Opened by nellh 3 months ago - 1 comment

#1931 - github action to run bids-validator on bids-examples

Issue - State: open - Opened by yarikoptic 3 months ago
Labels: BEP

#1928 - fix: Preserve key properties when using spread to copy BIDSFile objects in browser environments

Pull Request - State: closed - Opened by nellh 3 months ago - 1 comment
Labels: schema

#1927 - Using the optio --schema master (-s master) is throwing an error

Issue - State: closed - Opened by achilleasNP 3 months ago - 1 comment

#1926 - Warning for samples.tsv column names already defined in the standard.

Issue - State: open - Opened by achilleasNP 3 months ago - 1 comment
Labels: legacy

#1925 - Wrong error message on validation of stim file

Issue - State: closed - Opened by Remi-Gau 3 months ago - 1 comment

#1924 - FIX: Add minimum Python requirement to package metadata

Pull Request - State: closed - Opened by effigies 3 months ago - 5 comments
Labels: bug, python

#1923 - sessions.json

Issue - State: open - Opened by achilleasNP 3 months ago
Labels: bug, legacy

#1922 - chore(deps): bump bids-validator/spec from `5b835b0` to `bd08602`

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies, submodules