bhmm/bhmm issues and pull requests

#55 - Update MANIFEST.in

Pull Request - State: closed - Opened by clonker about 4 years ago

#54 - makes seed configurable when sampling hidden path trajectories

Pull Request - State: closed - Opened by clonker over 4 years ago - 2 comments

#53 - Problem with sample path

Issue - State: closed - Opened by clonker over 4 years ago - 3 comments

#52 - ML-HMM count matrix

Pull Request - State: closed - Opened by thempel over 6 years ago

#51 - Fix discrete outputmodel sampling

Pull Request - State: closed - Opened by marscher over 6 years ago - 3 comments

#50 - [estimators.BayesianHMMSampler] bugfix: broken check for p0_prior shape

Pull Request - State: closed - Opened by thempel over 6 years ago

#49 - discrete sampling fails during dirichlet sampling with numpy-1.14

Issue - State: closed - Opened by marscher over 6 years ago - 4 comments
Labels: bug

#48 - check for malloc failures and gracefully handle them

Pull Request - State: closed - Opened by marscher almost 7 years ago - 1 comment

#47 - Fix travis miniconda retrieval issue

Pull Request - State: closed - Opened by jchodera almost 8 years ago

#46 - Update travis test scheme due to 'conda build' release changes

Pull Request - State: closed - Opened by jchodera about 8 years ago

#45 - Travis failurest

Issue - State: closed - Opened by jchodera about 8 years ago - 1 comment

#44 - AttributeError: 'HMM' object has no attribute 'Pi'

Issue - State: open - Opened by ChayaSt about 8 years ago

#43 - Fix stochastic test failures

Issue - State: open - Opened by jchodera over 8 years ago - 1 comment

#42 - Real value is not within confidence interval for synthetic three stat model

Issue - State: open - Opened by ChayaSt over 8 years ago - 4 comments

#41 - Update travis and devtools

Pull Request - State: closed - Opened by jchodera over 8 years ago - 3 comments

#40 - changes self._stationary to self.is_stationary

Pull Request - State: closed - Opened by ChayaSt over 8 years ago - 4 comments

#39 - SampledHMM object has no attribute _stationary

Issue - State: closed - Opened by ChayaSt over 8 years ago - 4 comments

#38 - added test for Gaussian init

Pull Request - State: closed - Opened by franknoe over 8 years ago - 1 comment

#37 - HMM initialization failures, kmeans 64 bit

Pull Request - State: closed - Opened by clonker over 8 years ago - 7 comments

#36 - HMM initialization is broken

Issue - State: closed - Opened by anntzer over 8 years ago - 7 comments

#35 - Added standard LGPL license notes

Pull Request - State: closed - Opened by franknoe over 8 years ago - 1 comment

#34 - Robust output model

Pull Request - State: closed - Opened by franknoe over 8 years ago - 5 comments

#33 - debug

Pull Request - State: closed - Opened by franknoe over 8 years ago

#32 - Discrete hmm fix state indexing

Pull Request - State: closed - Opened by franknoe over 8 years ago - 2 comments

#31 - error initializing HMM

Issue - State: open - Opened by yarden over 8 years ago - 1 comment

#30 - Init splitstates

Pull Request - State: closed - Opened by franknoe over 8 years ago

#29 - Connectivity handling

Pull Request - State: closed - Opened by franknoe over 8 years ago - 14 comments

#28 - error trying to sample from discrete HMM

Issue - State: closed - Opened by yarden over 8 years ago - 1 comment

#27 - new release?

Issue - State: closed - Opened by marscher over 8 years ago - 4 comments

#26 - Added a benchmarking module

Pull Request - State: closed - Opened by franknoe almost 9 years ago

#25 - [travis] sudo is diabled in upstream; use apt addon to install additional pkgs.

Pull Request - State: closed - Opened by marscher almost 9 years ago - 2 comments

#24 - new patch release

Issue - State: closed - Opened by franknoe almost 9 years ago - 1 comment

#23 - Fixed bug arising from nonuniform trajectory lengths

Pull Request - State: closed - Opened by franknoe almost 9 years ago

#22 - [setup] Automatically drag-in build-time dependencies. Handle cython extensions transparently.

Pull Request - State: closed - Opened by marscher almost 9 years ago - 5 comments

#21 - [WIP] Synchronize dev conda recipe with setup.py and real conda recipe

Pull Request - State: closed - Opened by jchodera about 9 years ago - 1 comment

#20 - error in chi_square call

Issue - State: open - Opened by marscher about 9 years ago - 10 comments

#19 - added Appveyor (Windows) CI.

Pull Request - State: closed - Opened by marscher about 9 years ago - 6 comments

#18 - new release for updated dependencies?

Issue - State: closed - Opened by marscher about 9 years ago - 6 comments

#17 - Overflow in doctest

Issue - State: closed - Opened by jchodera about 9 years ago - 2 comments

#16 - added callback function interface to bayesian sampling, to make it accessible for progressbars

Pull Request - State: closed - Opened by marscher about 9 years ago - 1 comment

#15 - performance tweaks for MLHMM and BHMM

Pull Request - State: closed - Opened by franknoe about 9 years ago - 1 comment

#14 - Automatic testing

Issue - State: closed - Opened by franknoe about 9 years ago - 3 comments

#13 - Removed bhmm.msm and using new msmtools sampling code

Pull Request - State: closed - Opened by franknoe about 9 years ago

#12 - GMM warning

Issue - State: closed - Opened by franknoe about 9 years ago - 1 comment

#11 - [setup|base] use versioneer for obtaining version numbers from git tags.

Pull Request - State: closed - Opened by marscher about 9 years ago - 2 comments

#10 - Py3k

Pull Request - State: closed - Opened by marscher about 9 years ago - 5 comments

#9 - Remove sklearn and pyemma dep

Pull Request - State: closed - Opened by marscher about 9 years ago - 3 comments

#8 - removed pyemma dependency

Pull Request - State: closed - Opened by marscher about 9 years ago - 11 comments

#7 - fix vc compilation

Pull Request - State: closed - Opened by marscher about 9 years ago - 1 comment

#6 - compilation fails with visual c++

Issue - State: closed - Opened by marscher about 9 years ago - 2 comments

#5 - bhmm-dev package on binstar

Issue - State: closed - Opened by jchodera about 9 years ago - 1 comment

#4 - Update setup.py to 0.4.2

Pull Request - State: closed - Opened by jchodera about 9 years ago

#3 - Updated setup.py to version 0.4.0 to match release.

Pull Request - State: closed - Opened by jchodera about 9 years ago

#2 - Docs hosting?

Issue - State: closed - Opened by jchodera about 9 years ago - 7 comments

#1 - Updated README.md following split of bhmm toolkit

Pull Request - State: closed - Opened by jchodera about 9 years ago

GitHub / bhmm/bhmm issues and pull requests