Ecosyste.ms: Issues

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GitHub / bhklab/pharmacodi_snakemake_pipeline issues and pull requests

#11 - UHNBreast Hill Slope values are NULL in the current PDB database

Issue - State: open - Opened by p-smirnov about 2 years ago - 4 comments

#10 - Rerun PharmacoDI to update PharmacoDB

Issue - State: open - Opened by ChristopherEeles over 2 years ago

#9 - Concatenate duplicated reactome_ids with '///'

Issue - State: open - Opened by ChristopherEeles about 3 years ago - 1 comment
Labels: enhancement

#8 - Three drugs from NCI60 failed to map to the drugs_with_ids.csv file

Issue - State: open - Opened by ChristopherEeles about 3 years ago - 2 comments
Labels: bug, help wanted

#7 - TODO: Remove or formalize annotation update work arounds

Issue - State: open - Opened by ChristopherEeles about 3 years ago
Labels: bug, enhancement, help wanted

#6 - `get_chembl_compound_targets` rule runs as part of `all` rule

Issue - State: open - Opened by ChristopherEeles about 3 years ago
Labels: enhancement, help wanted

#5 - Add ChEMBL ids for drug annotations

Issue - State: closed - Opened by sisiranair over 3 years ago - 1 comment
Labels: enhancement

#4 - Reintegrate schema_change to main

Pull Request - State: closed - Opened by ChristopherEeles over 3 years ago

#3 - Update cell line table to include the unique ids.

Issue - State: closed - Opened by gangeshberi over 3 years ago

#2 - SQLAlchemy dropping all tables fails with foreign key error.

Issue - State: closed - Opened by ChristopherEeles over 3 years ago
Labels: bug

#1 - SQLAlchemy DB writes fail with new tables

Issue - State: closed - Opened by ChristopherEeles over 3 years ago
Labels: bug