Ecosyste.ms: Issues

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GitHub / bhklab/genefu issues and pull requests

#33 - Install and Build error on BioC

Issue - State: open - Opened by jjjermiah 4 months ago

#33 - Install and Build error on BioC

Issue - State: open - Opened by jjjermiah 4 months ago

#32 - Genefu package

Issue - State: open - Opened by Ojulari almost 2 years ago - 5 comments

#32 - Genefu package

Issue - State: open - Opened by Ojulari almost 2 years ago - 5 comments

#31 - Corrected the calculation, updated help text

Pull Request - State: open - Opened by paulbarber about 2 years ago - 2 comments

#31 - Corrected the calculation, updated help text

Pull Request - State: open - Opened by paulbarber about 2 years ago - 2 comments

#30 - PAM50 classification

Issue - State: closed - Opened by elicabe about 2 years ago - 3 comments

#30 - PAM50 classification

Issue - State: closed - Opened by elicabe about 2 years ago - 3 comments

#29 - molecular.subtyping error

Issue - State: open - Opened by elicabe over 2 years ago - 3 comments

#29 - molecular.subtyping error

Issue - State: open - Opened by elicabe over 2 years ago - 3 comments

#28 - preprocessing of test data for genefu

Issue - State: open - Opened by rocanja over 2 years ago - 2 comments
Labels: question

#28 - preprocessing of test data for genefu

Issue - State: open - Opened by rocanja over 2 years ago - 2 comments
Labels: question

#27 - Centroids of PAM50 and Different result for TCGA-BRCA RNA-seq data

Issue - State: closed - Opened by calisirkubra over 2 years ago - 3 comments

#27 - Centroids of PAM50 and Different result for TCGA-BRCA RNA-seq data

Issue - State: closed - Opened by calisirkubra over 2 years ago - 3 comments

#26 - Can this package be applied to RNA-seq data?

Issue - State: closed - Opened by lincj1994 over 2 years ago - 1 comment

#26 - Can this package be applied to RNA-seq data?

Issue - State: closed - Opened by lincj1994 over 2 years ago - 1 comment

#25 - Different results when subtyping with AIMS within genefu and using AIMS package

Issue - State: closed - Opened by jakalssj3 over 2 years ago - 2 comments

#25 - Different results when subtyping with AIMS within genefu and using AIMS package

Issue - State: closed - Opened by jakalssj3 over 2 years ago - 2 comments

#24 - How to use an in-house-dataset to evaluate centroids for PAM50 method

Issue - State: closed - Opened by marcellosalvi almost 3 years ago - 4 comments
Labels: question

#24 - How to use an in-house-dataset to evaluate centroids for PAM50 method

Issue - State: closed - Opened by marcellosalvi almost 3 years ago - 4 comments
Labels: question

#23 - About claudinLow function to analyze three groups of patients

Issue - State: closed - Opened by HengqiLiu almost 3 years ago - 2 comments
Labels: question

#23 - About claudinLow function to analyze three groups of patients

Issue - State: closed - Opened by HengqiLiu almost 3 years ago - 2 comments
Labels: question

#22 - Seurat and genefu

Issue - State: closed - Opened by ksaunders73 almost 3 years ago - 6 comments
Labels: question

#22 - Seurat and genefu

Issue - State: closed - Opened by ksaunders73 almost 3 years ago - 6 comments
Labels: question

#21 - Subtyping mouse samples

Issue - State: closed - Opened by maringa780 about 3 years ago - 2 comments

#21 - Subtyping mouse samples

Issue - State: closed - Opened by maringa780 about 3 years ago - 2 comments

#20 - molecular.subtyping

Issue - State: closed - Opened by zenglongjin over 3 years ago - 4 comments

#20 - molecular.subtyping

Issue - State: closed - Opened by zenglongjin over 3 years ago - 4 comments

#19 - Fixing R version in GitHub actions

Pull Request - State: closed - Opened by ChristopherEeles over 3 years ago - 1 comment

#19 - Fixing R version in GitHub actions

Pull Request - State: closed - Opened by ChristopherEeles over 3 years ago - 1 comment

#18 - ggi() and gene70() commands input files

Issue - State: closed - Opened by matteo95serra over 3 years ago - 2 comments

#18 - ggi() and gene70() commands input files

Issue - State: closed - Opened by matteo95serra over 3 years ago - 2 comments

#17 - endoPredict, gene70, gene76 and possible oncotypedx functions don't appear to work

Issue - State: closed - Opened by BairdMcI almost 4 years ago - 13 comments

#17 - endoPredict, gene70, gene76 and possible oncotypedx functions don't appear to work

Issue - State: closed - Opened by BairdMcI almost 4 years ago - 13 comments

#16 - question about samples treatment conditions when using molecular.subtyping

Issue - State: closed - Opened by jiajiayb about 5 years ago - 7 comments

#16 - question about samples treatment conditions when using molecular.subtyping

Issue - State: closed - Opened by jiajiayb about 5 years ago - 7 comments

#13 - Potential mapping issue

Issue - State: closed - Opened by bhaibeka over 5 years ago - 2 comments

#13 - Potential mapping issue

Issue - State: closed - Opened by bhaibeka over 5 years ago - 2 comments

#12 - oncotypedx risk score NA

Issue - State: closed - Opened by IL2liu almost 6 years ago - 1 comment

#12 - oncotypedx risk score NA

Issue - State: closed - Opened by IL2liu almost 6 years ago - 1 comment

#11 - Using genefu with other tumor than breast cancer

Issue - State: closed - Opened by demis001 over 7 years ago - 2 comments

#11 - Using genefu with other tumor than breast cancer

Issue - State: closed - Opened by demis001 over 7 years ago - 2 comments

#10 - package not available for R version 3.1.2

Issue - State: closed - Opened by TrofimovAssya over 7 years ago - 5 comments

#9 - Problem with subtype and crisp classification with AIMS

Issue - State: closed - Opened by detorrentel over 8 years ago - 2 comments

#8 - PAM50

Issue - State: closed - Opened by DGendoo almost 9 years ago

#7 - Subtype.Proba for CL

Issue - State: closed - Opened by DGendoo about 9 years ago

#6 - RORS vs RORP

Issue - State: closed - Opened by DGendoo about 9 years ago

#5 - Compare the DGendoo fork with Master2

Pull Request - State: closed - Opened by DGendoo over 9 years ago - 1 comment

#4 - Compare the DGendoo fork with Master

Pull Request - State: closed - Opened by DGendoo over 9 years ago

#3 - Upgrade to Version 2 of Genefu.

Pull Request - State: closed - Opened by DGendoo over 9 years ago

#2 - Bug fix in the calculation of the rorS

Pull Request - State: closed - Opened by Livia-Rasp over 9 years ago - 1 comment

#1 - Pam50 and Pam50.robust models are identical

Issue - State: closed - Opened by rvimieiro over 9 years ago - 2 comments