bgruening/docker-ipython-notebook issues and pull requests

#65 - Pip-installable galaxy.py

Issue - State: open - Opened by hexylena over 8 years ago - 9 comments
Labels: enhancement, help wanted

#64 - Using non-object route to get history elements

Pull Request - State: closed - Opened by bgruening almost 9 years ago

#63 - Don't expect /import to be a shared volume, get a stored ipynb from Galaxy using bioblend

Pull Request - State: closed - Opened by natefoo about 9 years ago

#62 - Theming

Issue - State: open - Opened by hexylena about 9 years ago
Labels: enhancement

#61 - New release for Galaxy 15.10

Pull Request - State: closed - Opened by hexylena about 9 years ago

#60 - Replace docker_port with proxy_prefix

Pull Request - State: closed - Opened by hexylena about 9 years ago

#59 - merge dev into master

Pull Request - State: closed - Opened by bgruening about 9 years ago

#58 - Consider other base images

Issue - State: open - Opened by hexylena about 9 years ago - 7 comments
Labels: enhancement, long term planning

#57 - add pyvcf

Issue - State: closed - Opened by tiagoantao about 9 years ago - 4 comments

#56 - Package Requests

Issue - State: open - Opened by hexylena about 9 years ago
Labels: enhancement

#55 - Handle web+ftb uploads

Issue - State: open - Opened by hexylena over 9 years ago - 1 comment
Labels: enhancement

#54 - Wrong uid/gid when launching

Issue - State: closed - Opened by hexylena over 9 years ago - 11 comments
Labels: bug, help wanted

#53 - Kernels requested for Jupyter Galaxy IE

Issue - State: closed - Opened by hexylena over 9 years ago - 3 comments
Labels: enhancement

#52 - Kernels requested for Jupyter Galaxy IE

Issue - State: open - Opened by hexylena over 9 years ago
Labels: enhancement

#51 - Expose email address to notebook

Issue - State: closed - Opened by hexylena over 9 years ago
Labels: enhancement

#50 - Fixes #41

Pull Request - State: closed - Opened by hexylena over 9 years ago - 4 comments
Labels: enhancement

#49 - Logging

Pull Request - State: closed - Opened by hexylena over 9 years ago - 2 comments
Labels: bug, enhancement

#48 - Improvements to galaxy.py

Pull Request - State: closed - Opened by hexylena over 9 years ago - 1 comment
Labels: enhancement

#47 - Test for group creation, but not user creation

Issue - State: closed - Opened by hexylena over 9 years ago - 4 comments
Labels: enhancement

#46 - Include code merged specifically to master

Pull Request - State: closed - Opened by hexylena over 9 years ago - 3 comments

#45 - PR for release

Pull Request - State: closed - Opened by hexylena over 9 years ago - 2 comments

#44 - Merging 15.05 into dev

Pull Request - State: closed - Opened by hexylena over 9 years ago - 2 comments

#43 - Fix startup.sh for Galaxy's running with UID 1450.

Pull Request - State: closed - Opened by jmchilton over 9 years ago - 6 comments

#42 - Added header image for easy linking to Docker hub

Pull Request - State: closed - Opened by hexylena over 9 years ago - 2 comments

#41 - Get rid of non-object code path in galaxy.py

Issue - State: closed - Opened by bgruening over 9 years ago - 1 comment

#40 - Replace get(history_id) with get_preview() which is more lightweight.

Pull Request - State: closed - Opened by bgruening over 9 years ago

#39 - Disable scary warnings

Pull Request - State: closed - Opened by hexylena over 9 years ago
Labels: bug

#38 - Doc updates

Pull Request - State: closed - Opened by hexylena over 9 years ago

#37 - Env

Pull Request - State: closed - Opened by hexylena over 9 years ago - 1 comment
Labels: enhancement

#36 - Dyn host

Pull Request - State: closed - Opened by hexylena over 9 years ago - 4 comments
Labels: enhancement

#35 - Uid gid changes

Pull Request - State: closed - Opened by hexylena over 9 years ago - 4 comments
Labels: bug

#34 - Fixes #33

Pull Request - State: closed - Opened by hexylena over 9 years ago - 3 comments

#33 - Issues discovered from debugging

Issue - State: closed - Opened by hexylena over 9 years ago - 1 comment

#32 - Use env var to prevent removal of host/tmp folder

Issue - State: closed - Opened by hexylena over 9 years ago - 1 comment

#31 - Dynamically resolve ``$DOCKER_HOST``...

Issue - State: closed - Opened by jmchilton over 9 years ago - 4 comments

#30 - Deprecate galaxy_paster_port?

Issue - State: closed - Opened by jmchilton over 9 years ago - 3 comments

#29 - Change default user

Pull Request - State: closed - Opened by bgruening over 9 years ago - 4 comments

#28 - Add real user with home directory

Issue - State: closed - Opened by bgruening over 9 years ago - 16 comments

#27 - IPython3 integration

Issue - State: open - Opened by bgruening over 9 years ago - 2 comments

#26 - base on ubuntu:14.04

Issue - State: closed - Opened by bgruening almost 10 years ago - 3 comments

#25 - Fix matplotlib write permission & add put/get command line tools

Pull Request - State: closed - Opened by bgruening about 10 years ago

#24 - Cache datasets by checking if file exists

Pull Request - State: closed - Opened by hexylena about 10 years ago

#23 - Hardcode conf.yaml path

Pull Request - State: closed - Opened by hexylena about 10 years ago

#22 - Get command doesn't cache

Issue - State: closed - Opened by hexylena about 10 years ago

#21 - Using ENV vars instead of a config yaml file.

Issue - State: closed - Opened by bgruening about 10 years ago - 2 comments
Labels: enhancement

#20 - Fixes for user/permission issues

Pull Request - State: closed - Opened by hexylena about 10 years ago - 1 comment

#19 - Use objects API

Pull Request - State: closed - Opened by jmchilton about 10 years ago - 11 comments

#18 - get() in notebook should check status code

Issue - State: closed - Opened by jmchilton about 10 years ago - 3 comments

#17 - Change the container to a non-root environment

Pull Request - State: closed - Opened by bgruening about 10 years ago - 12 comments
Labels: bug

#16 - Add some ONBUILD instructions

Issue - State: open - Opened by bgruening about 10 years ago

#15 - Enable R magic.

Pull Request - State: closed - Opened by jmchilton about 10 years ago - 5 comments

#14 - Idea: Non-root variant

Issue - State: closed - Opened by jmchilton about 10 years ago - 9 comments

#13 - Allow command line access

Pull Request - State: closed - Opened by hexylena about 10 years ago - 7 comments

#12 - Freeze IPython to a specific version

Pull Request - State: closed - Opened by hexylena about 10 years ago - 3 comments

#11 - Refactor to pull origin from conf file

Pull Request - State: closed - Opened by hexylena about 10 years ago

#10 - More CORS fixes

Pull Request - State: closed - Opened by hexylena about 10 years ago - 1 comment

#9 - enable cross-origin resource sharing and disable x-frame-options

Pull Request - State: closed - Opened by hexylena about 10 years ago - 1 comment

#8 - Save and put, Dockerfile Reihenfolge

Pull Request - State: closed - Opened by TorHou about 10 years ago - 1 comment

#7 - Enable cross origin resource sharing

Issue - State: closed - Opened by bgruening about 10 years ago

#6 - Require Authentication

Issue - State: closed - Opened by hexylena over 10 years ago - 1 comment

#5 - Opening notebooks at end of each minute accidentally kills notebook

Issue - State: closed - Opened by hexylena over 10 years ago
Labels: bug

#4 - IP address whitelisting

Issue - State: closed - Opened by hexylena over 10 years ago - 5 comments
Labels: bug

#3 - Failover for galaxy URL methods implemented

Pull Request - State: closed - Opened by hexylena over 10 years ago

#2 - Allowed for use of galaxy profile

Pull Request - State: closed - Opened by hexylena over 10 years ago

#1 - Permissions inside container result in root owned files externally

Issue - State: closed - Opened by hexylena over 10 years ago - 8 comments

GitHub / bgruening/docker-ipython-notebook issues and pull requests