Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / bgruening/docker-galaxy-stable issues and pull requests

#611 - 24.1 pending tasks

Pull Request - State: closed - Opened by jyotipm29 3 months ago

#610 - repair the website

Issue - State: open - Opened by bgruening 3 months ago - 1 comment

#609 - ideas for a new 24.x version

Issue - State: open - Opened by bgruening 4 months ago - 7 comments

#608 - bump to 24.1 - Compose setup

Pull Request - State: closed - Opened by jyotipm29 4 months ago - 3 comments

#607 - bump to 24.1 - Single-container setup

Pull Request - State: closed - Opened by jyotipm29 5 months ago - 35 comments

#605 - ERROR: Process docker: no such file

Issue - State: closed - Opened by potant over 1 year ago - 1 comment

#604 - unable to start container

Issue - State: closed - Opened by GuilhemSempere over 1 year ago - 1 comment

#603 - can't load the welcome.html

Issue - State: closed - Opened by LinsenHou over 1 year ago - 1 comment

#602 - Can't download file from urls

Issue - State: closed - Opened by H1207953831 almost 2 years ago - 1 comment

#601 - Galaxy 22.05 updates

Issue - State: closed - Opened by ebolyen almost 2 years ago - 1 comment

#600 - Bump to 22.05

Pull Request - State: open - Opened by chambm almost 2 years ago - 4 comments

#599 - Production use?

Issue - State: closed - Opened by meowcat about 2 years ago - 1 comment

#598 - consider to integrate and use Dokter

Issue - State: open - Opened by bgruening over 2 years ago

#597 - Fix for start failure

Issue - State: closed - Opened by benjaminbrumbaugh over 2 years ago - 1 comment

#596 - Remove link to unmaintained ansible role

Pull Request - State: closed - Opened by hexylena over 2 years ago

#595 - 403 Forbidden nginx/1.14.0 (Ubuntu)

Issue - State: closed - Opened by ghost over 2 years ago - 1 comment

#594 - Custom welcome.html is not displaying?

Issue - State: closed - Opened by ZimmerA almost 3 years ago - 1 comment

#593 - Docker container runs out of space if /export is used

Issue - State: closed - Opened by eghasemy almost 3 years ago

#592 - Dontainer not starting after copying

Issue - State: closed - Opened by cass436 about 3 years ago - 1 comment

#591 - Unstable running of standalone galaxy setup as Azure App Service

Issue - State: closed - Opened by kdudani-tibco about 3 years ago - 1 comment

#590 - Bump to 21.09

Pull Request - State: open - Opened by chambm about 3 years ago - 3 comments

#589 - Add support for running IRIDA

Pull Request - State: open - Opened by pvanheus over 3 years ago - 2 comments

#588 - python 3.8 and futures 3.1.1 not working well together

Issue - State: closed - Opened by gad83 over 3 years ago - 8 comments

#587 - Docker galaxy cannot be installed and started correctly

Issue - State: closed - Opened by shenweiyan over 3 years ago - 9 comments

#586 - Fix galaxy-server/Dockerfile to be supported on RHEL8 with podman

Pull Request - State: closed - Opened by forgetfr over 3 years ago - 1 comment

#585 - error in attmap setup command: use_2to3 is invalid

Issue - State: closed - Opened by gad83 over 3 years ago - 3 comments

#584 - Pre-installing tools in the tool_conf via conda

Issue - State: closed - Opened by ebolyen over 3 years ago - 1 comment

#583 - Docker-galaxy doesn't work

Issue - State: closed - Opened by deoliveiralf almost 4 years ago - 3 comments

#582 - WIP. In compose: Add a galaxy-post-configurator server to add specifics of a flavour

Issue - State: closed - Opened by fubar2 almost 4 years ago - 1 comment

#581 - In compose: make the galaxy server depend on it's configurator

Pull Request - State: closed - Opened by fubar2 almost 4 years ago - 1 comment

#580 - upgrade to 21.01

Pull Request - State: closed - Opened by bgruening almost 4 years ago

#577 - 20.09

Pull Request - State: closed - Opened by jonas27 about 4 years ago - 6 comments

#576 - 20.09

Pull Request - State: closed - Opened by jonas27 about 4 years ago - 26 comments

#574 - Compose Chronos

Pull Request - State: open - Opened by gmauro over 4 years ago - 1 comment

#573 - Change base image to galaxy min

Pull Request - State: closed - Opened by nuwang over 4 years ago

#572 - Update galaxy-server Dockerfile

Pull Request - State: closed - Opened by gmauro over 4 years ago - 1 comment

#571 - 403/Forbidden and "Could not open job state file"

Issue - State: closed - Opened by marco-brandizi over 4 years ago - 7 comments

#570 - Brewing flavors - tools installing but not seen in tool panel.

Issue - State: closed - Opened by MoHeydarian-MS over 4 years ago - 1 comment

#569 - 20.09

Pull Request - State: closed - Opened by bgruening over 4 years ago - 4 comments

#568 - Test2005

Pull Request - State: closed - Opened by FBernal-oPs over 4 years ago

#567 - Test2005

Pull Request - State: closed - Opened by FBernal-oPs over 4 years ago

#566 - Labels

Issue - State: closed - Opened by fabianomenegidio over 4 years ago - 1 comment

#565 - Better communication on the default password/apikey change in 20.05

Pull Request - State: closed - Opened by abretaud over 4 years ago - 2 comments

#564 - Error installing tools

Issue - State: closed - Opened by fabianomenegidio over 4 years ago - 2 comments

#563 - netcat dependency

Pull Request - State: open - Opened by bedroesb over 4 years ago - 2 comments

#562 - Database problems with startup and startup_lite

Issue - State: closed - Opened by bedroesb over 4 years ago - 19 comments

#561 - Fix corrupted conda packages

Pull Request - State: closed - Opened by abretaud over 4 years ago - 1 comment

#560 - [20.05] several bug fixes

Pull Request - State: closed - Opened by abretaud over 4 years ago - 3 comments

#559 - Fix missing admin user for flavors

Pull Request - State: closed - Opened by abretaud over 4 years ago - 3 comments

#558 - The 20.05 Galaxy release

Pull Request - State: closed - Opened by bgruening over 4 years ago

#557 - Update standalone to 20.05

Pull Request - State: closed - Opened by abretaud over 4 years ago - 7 comments

#556 - Fix CI artifacts & retry more often

Pull Request - State: closed - Opened by AndreasSko over 4 years ago

#555 - CI: Tests for Pull Requests & small fixes

Pull Request - State: closed - Opened by AndreasSko over 4 years ago - 5 comments

#554 - :sparkles: Introduce Kubernetes runner

Pull Request - State: closed - Opened by AndreasSko over 4 years ago - 3 comments

#553 - Use PyCurl for communicating with Pulsar (over REST)

Pull Request - State: closed - Opened by AndreasSko over 4 years ago

#552 - Unresolved paths to some images, e.g `static/style/blue/ok_small.png`

Issue - State: closed - Opened by fgp almost 5 years ago - 1 comment

#551 - Ephemeris not available during Docker build in 19.09

Issue - State: closed - Opened by bedroesb almost 5 years ago - 1 comment

#550 - Bump psutil from 4.1.0 to 5.6.6 in /compose/galaxy-slurm

Pull Request - State: open - Opened by dependabot[bot] almost 5 years ago - 2 comments
Labels: dependencies

#549 - Bump psutil from 4.1.0 to 5.6.6 in /compose/galaxy-grafana

Pull Request - State: open - Opened by dependabot[bot] almost 5 years ago - 2 comments
Labels: dependencies

#548 - About can't use reference genome in docker.

Issue - State: closed - Opened by jackycsie almost 5 years ago - 1 comment

#547 - Fix typos

Pull Request - State: closed - Opened by nsoranzo about 5 years ago - 1 comment

#546 - Refactor docker-compose setup

Pull Request - State: closed - Opened by AndreasSko about 5 years ago - 4 comments

#545 - Fix 19.09 build

Pull Request - State: closed - Opened by abretaud about 5 years ago - 2 comments

#544 - File upload not working

Issue - State: closed - Opened by VangelisTheodorakis about 5 years ago - 1 comment

#543 - Galaxy postgresql password

Issue - State: closed - Opened by likku3 about 5 years ago - 2 comments

#541 - blastn: error while loading shared libraries: libidn.so.11

Issue - State: closed - Opened by dfornika about 5 years ago - 1 comment

#540 - 19.09 release

Pull Request - State: closed - Opened by bgruening about 5 years ago - 8 comments

#538 - Create a docker image from a running container

Issue - State: closed - Opened by mohan-XD about 5 years ago - 1 comment

#537 - bug report: when using docker swarm build galaxy, we can't upload file.

Issue - State: open - Opened by lizhi16 about 5 years ago - 1 comment

#535 - Change galaxy user shell to /bin/bash

Pull Request - State: closed - Opened by abretaud over 5 years ago - 1 comment

#532 - Configure postgres to make incremental backups by default

Issue - State: open - Opened by chambm over 5 years ago - 2 comments

#531 - Bump mercurial from 3.7.3 to 4.1.3 in /compose/galaxy-slurm

Pull Request - State: closed - Opened by dependabot[bot] over 5 years ago - 1 comment
Labels: dependencies

#530 - Bump ecdsa from 0.13 to 0.13.3 in /compose/galaxy-grafana

Pull Request - State: closed - Opened by dependabot[bot] over 5 years ago - 1 comment
Labels: dependencies

#529 - Bump ecdsa from 0.13 to 0.13.3 in /compose/galaxy-slurm

Pull Request - State: closed - Opened by dependabot[bot] over 5 years ago
Labels: dependencies

#528 - Doc fixes for 19.05 upgrade

Pull Request - State: closed - Opened by abretaud over 5 years ago - 7 comments

#527 - Docs for upgrading postrgres don't work

Issue - State: closed - Opened by tdudgeon over 5 years ago - 6 comments

#526 - Container can't be built

Issue - State: closed - Opened by dpryan79 over 5 years ago - 1 comment

#525 - [WIP] Fix 1901 build

Pull Request - State: closed - Opened by osallou over 5 years ago - 6 comments

#524 - README: use env vars for credentials

Pull Request - State: closed - Opened by osallou over 5 years ago - 1 comment

#523 - 19.05 update conda + fix slurm not starting

Pull Request - State: closed - Opened by abretaud over 5 years ago - 20 comments

#522 - wrong permissions on /galaxy/upload_store

Issue - State: closed - Opened by tdudgeon over 5 years ago - 1 comment

#521 - why admin user is created in Dockerfile?

Issue - State: open - Opened by osallou over 5 years ago - 1 comment

#518 - metadata detection for biom1 went wrong

Issue - State: closed - Opened by vebaev over 5 years ago - 1 comment

#517 - Patch to allow successful build

Pull Request - State: open - Opened by innovate-invent over 5 years ago - 2 comments

#516 - Virtualenv failing

Issue - State: closed - Opened by innovate-invent over 5 years ago - 1 comment

#515 - Orchestrated+Fat Galaxy

Issue - State: open - Opened by ThomasWollmann over 5 years ago - 2 comments

#514 - invocation_reports_2

Pull Request - State: closed - Opened by bgruening over 5 years ago - 1 comment

#513 - Changes to config of nginx and supervisor are not persisted

Issue - State: open - Opened by tdudgeon over 5 years ago - 2 comments

#512 - WIP: More modular testing infrastructure

Pull Request - State: closed - Opened by bgruening over 5 years ago

#510 - Docker local tool does not detect available dataset

Issue - State: closed - Opened by mhabsaoui over 5 years ago - 1 comment

#505 - Added sections in README on only running some of the galaxy container…

Pull Request - State: closed - Opened by zph001 almost 6 years ago - 1 comment

#501 - Add comments and commented out variables for enabling SSL in galaxy-web

Pull Request - State: closed - Opened by zph001 almost 6 years ago - 2 comments

#500 - install-tools permissions issue

Issue - State: open - Opened by innovate-invent almost 6 years ago - 1 comment

#498 - Document or link to documentation for installing tools

Issue - State: open - Opened by innovate-invent almost 6 years ago - 3 comments