Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / beringresearch/ivis issues and pull requests

#123 - Does not work with TensorFlow 2.16.1

Issue - State: closed - Opened by Szubie 8 months ago - 2 comments

#122 - GitHub pages

Pull Request - State: closed - Opened by Szubie 12 months ago

#121 - Update doc requirements

Pull Request - State: closed - Opened by Szubie 12 months ago

#120 - GitHub actions

Pull Request - State: closed - Opened by Szubie 12 months ago

#119 - 2D visulization of crowded cluster with ivis

Issue - State: open - Opened by yuxiaokang-source almost 2 years ago - 1 comment

#118 - InternalError: Graph execution error:

Issue - State: closed - Opened by bitcometz about 2 years ago - 4 comments

#117 - Extremely slow extraction of KNN neighbours on 100k samples

Issue - State: closed - Opened by adavoudi about 2 years ago - 4 comments

#116 - attempt to apply non-function

Issue - State: closed - Opened by Feifei0511 over 2 years ago - 9 comments

#115 - OSError

Issue - State: closed - Opened by ZHUGUODONG1 over 2 years ago - 1 comment

#114 - One of the unit tests (knn_retrieval) can fail (machine dependent?)

Issue - State: closed - Opened by escherba over 2 years ago - 1 comment

#113 - 为了同步fork仓库

Pull Request - State: closed - Opened by wna26 over 2 years ago - 1 comment

#112 - Update .gitignore

Pull Request - State: closed - Opened by guyong824 over 2 years ago - 1 comment

#111 - Update conftest.py

Pull Request - State: closed - Opened by DaDaGuai-hwm over 2 years ago - 1 comment

#110 - Untrained model persistance

Pull Request - State: closed - Opened by Szubie almost 3 years ago

#108 - About scaling

Issue - State: closed - Opened by candalfigomoro about 3 years ago - 2 comments

#107 - Add conda-forge package

Issue - State: open - Opened by candalfigomoro about 3 years ago

#106 - Make `ivis.Ivis` picklable

Pull Request - State: closed - Opened by imatheussm about 3 years ago - 3 comments

#105 - Fix OOM example

Pull Request - State: closed - Opened by candalfigomoro about 3 years ago - 1 comment

#104 - How does ivis compare to UMAP?

Issue - State: closed - Opened by qiangjiaodeyugang over 3 years ago - 2 comments

#103 - Suggest implementing `predict_proba` and `predict` methods for Ivis object.

Issue - State: closed - Opened by idroz over 3 years ago - 1 comment

#102 - Schedule deprecation of positional arguments and `ntrees` to happen in version 2.2

Pull Request - State: closed - Opened by imatheussm over 3 years ago - 1 comment

#101 - `NotFittedError` after caching and reloading fitted `Ivis` instance

Issue - State: closed - Opened by imatheussm over 3 years ago - 2 comments

#100 - More modifications to ensure adherence to the sklearn API

Pull Request - State: closed - Opened by imatheussm over 3 years ago - 2 comments

#98 - Batched data

Pull Request - State: closed - Opened by Szubie over 3 years ago

#97 - classification_weight Parameter

Issue - State: closed - Opened by r0f1 over 3 years ago - 2 comments

#95 - Modifications to ensure adherence to sklearn API

Pull Request - State: closed - Opened by imatheussm over 3 years ago - 1 comment

#94 - remove margin param from r package

Pull Request - State: closed - Opened by idroz over 3 years ago

#93 - 新增功能完善原项目

Pull Request - State: closed - Opened by spiderrobot over 3 years ago - 1 comment

#92 - Data drift

Pull Request - State: closed - Opened by idroz over 3 years ago

#91 - `chunk_size` in knn set to 0

Issue - State: closed - Opened by yrahul3910 over 3 years ago - 2 comments

#90 - fix 'zero chunk size' error on many-core machines

Pull Request - State: closed - Opened by escherba over 3 years ago - 1 comment

#89 - Reproducibility

Issue - State: closed - Opened by Professoroo almost 4 years ago - 2 comments

#88 - address #87

Pull Request - State: closed - Opened by idroz almost 4 years ago

#87 - Ivis is not able to run inference on a sparse matrix

Issue - State: closed - Opened by idroz almost 4 years ago
Labels: bug

#86 - Notebook examples

Pull Request - State: closed - Opened by idroz almost 4 years ago

#85 - How to get stable results?

Issue - State: closed - Opened by rsarai almost 4 years ago - 4 comments

#84 - Tf 2.4 compat

Pull Request - State: closed - Opened by Szubie almost 4 years ago

#83 - model_save: optimizer is not compatible with pickle

Issue - State: closed - Opened by pmbaumgartner almost 4 years ago - 4 comments
Labels: bug

#82 - Ivis produces different embeddings from a saved model across multiple tensorflow sessions

Issue - State: closed - Opened by idroz almost 4 years ago - 1 comment
Labels: bug

#81 - Doc merge

Pull Request - State: closed - Opened by Szubie almost 4 years ago

#80 - doc reformatting

Pull Request - State: closed - Opened by idroz almost 4 years ago

#79 - Sequences module iad changes

Pull Request - State: closed - Opened by idroz almost 4 years ago

#78 - Knn refactor

Pull Request - State: closed - Opened by Szubie almost 4 years ago

#77 - Loss plugins

Pull Request - State: closed - Opened by Szubie almost 4 years ago

#76 - Refresh model save and callbacks

Pull Request - State: closed - Opened by Szubie about 4 years ago

#75 - add EmbeddingVisualisation class

Pull Request - State: closed - Opened by idroz about 4 years ago

#74 - Avoid attempting to reshape potential HDF5MAtrix inputs to KNN functions

Pull Request - State: closed - Opened by Szubie about 4 years ago

#73 - add support for n-dimensional inputs

Pull Request - State: closed - Opened by idroz about 4 years ago

#72 - minor syntax fix in R wrapper

Pull Request - State: closed - Opened by sheffe over 4 years ago - 1 comment

#71 - Under tensorflow 2.2.0 ivis fails to load a saved model

Issue - State: closed - Opened by idroz over 4 years ago - 1 comment

#70 - Cosine distance is not compatible with TF import

Issue - State: closed - Opened by idroz over 4 years ago - 1 comment

#69 - Add multi-label support to supervised ivis

Issue - State: closed - Opened by idroz over 4 years ago - 1 comment

#68 - Tf dataset

Pull Request - State: closed - Opened by idroz over 4 years ago

#67 - Distance-weighted random sampling of non-neighbor negatives

Issue - State: open - Opened by sheffe over 4 years ago - 2 comments

#66 - Enable registration or passing of a custom triplet loss function

Issue - State: closed - Opened by mihajenko over 4 years ago - 5 comments

#65 - R pkg fit() call finishes but subprocess doesn't terminate

Issue - State: closed - Opened by sheffe over 4 years ago - 4 comments

#64 - Revert "fix thread safety in keras sequence gen"

Pull Request - State: closed - Opened by idroz over 4 years ago

#63 - fix thread safety in keras sequence gen

Pull Request - State: closed - Opened by idroz over 4 years ago

#62 - Travis r installation fix

Pull Request - State: closed - Opened by idroz over 4 years ago

#61 - embedding dim cannot be 1

Issue - State: closed - Opened by hhaootian over 4 years ago - 3 comments

#60 - Add JOSS Badge to README

Issue - State: closed - Opened by mpadge almost 5 years ago - 1 comment

#59 - Custom generator for training on out-of-memory datasets

Issue - State: closed - Opened by candalfigomoro almost 5 years ago - 6 comments

#58 - Handling of mixed type datasets with categorical features

Issue - State: closed - Opened by candalfigomoro almost 5 years ago - 2 comments
Labels: question

#57 - Tf extra requires

Pull Request - State: closed - Opened by Szubie almost 5 years ago

#56 - tensorflow's Filling shuffle buffer is slow to fill up on very large datasets

Issue - State: closed - Opened by idroz almost 5 years ago - 2 comments

#55 - conda support in windows

Pull Request - State: closed - Opened by idroz almost 5 years ago

#54 - Default usage of 'annoy.index' is problematic.

Issue - State: closed - Opened by ForrestCKoch almost 5 years ago - 3 comments

#53 - How is the performance of ivis comparing to other single cell embedding methods?

Issue - State: closed - Opened by ttgump almost 5 years ago - 2 comments
Labels: discussion

#52 - Semi supervised

Pull Request - State: closed - Opened by idroz about 5 years ago

#51 - Eager execution performance

Pull Request - State: closed - Opened by Szubie about 5 years ago

#49 - On disk build config

Pull Request - State: closed - Opened by Szubie about 5 years ago

#48 - Bug with index.build(ntrees)

Issue - State: closed - Opened by sadatnfs about 5 years ago - 15 comments

#46 - Applying ivis on sequences

Issue - State: closed - Opened by mojovski about 5 years ago - 7 comments
Labels: discussion

#45 - Multi label supervision

Pull Request - State: closed - Opened by idroz about 5 years ago

#44 - Supervised regression

Pull Request - State: closed - Opened by idroz about 5 years ago

#43 - compiling the vignette requires a preexisting ivis virtual environment

Pull Request - State: closed - Opened by kevinrue over 5 years ago - 1 comment

#42 - Help for vignette

Pull Request - State: closed - Opened by kevinrue over 5 years ago - 2 comments

#41 - roxygenize

Pull Request - State: closed - Opened by kevinrue over 5 years ago

#40 - Import reticulate::virtualenv_remove in NAMESPACE

Issue - State: closed - Opened by kevinrue over 5 years ago

#39 - R vignette

Pull Request - State: closed - Opened by idroz over 5 years ago

#38 - Add a vignette to the R package

Issue - State: closed - Opened by kevinrue over 5 years ago - 5 comments

#37 - add R-package test

Pull Request - State: closed - Opened by idroz over 5 years ago

#36 - Windows annoy

Pull Request - State: closed - Opened by Szubie over 5 years ago

#35 - Extend readme in R package

Issue - State: closed - Opened by SaskiaFreytag over 5 years ago - 1 comment

#34 - Add contributor guidelines

Issue - State: closed - Opened by SaskiaFreytag over 5 years ago - 3 comments

#33 - Consider adding automated tests

Issue - State: closed - Opened by SaskiaFreytag over 5 years ago - 6 comments

#32 - Attempt to apply to non-function

Issue - State: closed - Opened by SaskiaFreytag over 5 years ago - 3 comments
Labels: R

#31 - Unstable result on dimensionality reduction

Issue - State: closed - Opened by abdalimran over 5 years ago - 2 comments
Labels: discussion

#30 - R virtualenv install

Pull Request - State: closed - Opened by idroz over 5 years ago

#29 - Issue running the example code to test the R package

Issue - State: closed - Opened by kevinrue over 5 years ago - 3 comments

#28 - Issue installing and running ivis R package in RStudio

Issue - State: closed - Opened by kevinrue over 5 years ago - 6 comments

#27 - add joss summary

Pull Request - State: closed - Opened by idroz over 5 years ago

#26 - tiny error in R-package/README.md

Issue - State: closed - Opened by vjcitn over 5 years ago - 1 comment

#25 - Windows compatibility?

Issue - State: closed - Opened by paul-harambee over 5 years ago - 13 comments
Labels: enhancement, help wanted

#24 - questions about distance and rescaling

Issue - State: closed - Opened by bzip2 over 5 years ago - 2 comments
Labels: discussion