Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / benjeffery/tsinfer-snakemake issues and pull requests
#52 - Use new batch_samples API
Pull Request -
State: closed - Opened by benjeffery 6 months ago
- 2 comments
#51 - Fix bad denom in ram calc
Pull Request -
State: closed - Opened by benjeffery 6 months ago
- 1 comment
#50 - Fix finalise
Pull Request -
State: closed - Opened by benjeffery 7 months ago
- 1 comment
#49 - Move resources to config
Pull Request -
State: closed - Opened by benjeffery 7 months ago
- 1 comment
#48 - Distribute bio2zarr
Pull Request -
State: closed - Opened by benjeffery 8 months ago
- 3 comments
#47 - Batch match ancestors
Pull Request -
State: closed - Opened by benjeffery 9 months ago
#46 - Make file extensions align with vcf2zarr docs
Issue -
State: open - Opened by hyanwong 9 months ago
#45 - Add tsdate
Pull Request -
State: closed - Opened by benjeffery 10 months ago
- 1 comment
#45 - Add tsdate
Pull Request -
State: closed - Opened by benjeffery 10 months ago
- 1 comment
#44 - Remove dask/xarray where possible
Issue -
State: open - Opened by benjeffery 10 months ago
#44 - Remove dask/xarray where possible
Issue -
State: open - Opened by benjeffery 10 months ago
#43 - JSONDecodeError on *_mask steps
Issue -
State: open - Opened by benjeffery 10 months ago
- 1 comment
#43 - JSONDecodeError on *_mask steps
Issue -
State: open - Opened by benjeffery 10 months ago
- 1 comment
#42 - Update bio2zarr
Issue -
State: open - Opened by benjeffery 10 months ago
#42 - Update bio2zarr
Issue -
State: open - Opened by benjeffery 10 months ago
#41 - Singletons in output
Issue -
State: open - Opened by benjeffery 10 months ago
- 4 comments
#41 - Singletons in output
Issue -
State: open - Opened by benjeffery 10 months ago
- 4 comments
#40 - Output low density regions
Pull Request -
State: closed - Opened by benjeffery 11 months ago
- 1 comment
#40 - Output low density regions
Pull Request -
State: closed - Opened by benjeffery 11 months ago
- 1 comment
#39 - Bio2zarr
Pull Request -
State: closed - Opened by benjeffery 12 months ago
- 1 comment
#39 - Bio2zarr
Pull Request -
State: closed - Opened by benjeffery 12 months ago
- 1 comment
#38 - Dont make a copy subset, use masks instead.
Pull Request -
State: closed - Opened by benjeffery 12 months ago
- 2 comments
#38 - Dont make a copy subset, use masks instead.
Pull Request -
State: closed - Opened by benjeffery 12 months ago
- 2 comments
#37 - Remove subsetting and replace with sample mask
Issue -
State: closed - Opened by benjeffery about 1 year ago
- 1 comment
#37 - Remove subsetting and replace with sample mask
Issue -
State: closed - Opened by benjeffery about 1 year ago
- 1 comment
#36 - Add tszip output step
Issue -
State: open - Opened by benjeffery about 1 year ago
#36 - Add tszip output step
Issue -
State: open - Opened by benjeffery about 1 year ago
#35 - Add a step that outputs site times
Issue -
State: open - Opened by benjeffery about 1 year ago
#35 - Add a step that outputs site times
Issue -
State: open - Opened by benjeffery about 1 year ago
#34 - Ancestral Allele out of bounds
Issue -
State: closed - Opened by barneyhill about 1 year ago
- 1 comment
#34 - Ancestral Allele out of bounds
Issue -
State: closed - Opened by barneyhill about 1 year ago
- 1 comment
#33 - DAG build time
Issue -
State: closed - Opened by barneyhill about 1 year ago
- 3 comments
#33 - DAG build time
Issue -
State: closed - Opened by barneyhill about 1 year ago
- 3 comments
#32 - Add site_density filter
Pull Request -
State: closed - Opened by benjeffery about 1 year ago
- 10 comments
#32 - Add site_density filter
Pull Request -
State: closed - Opened by benjeffery about 1 year ago
- 10 comments
#31 - Add site density at the margins filter
Issue -
State: closed - Opened by benjeffery over 1 year ago
#31 - Add site density at the margins filter
Issue -
State: closed - Opened by benjeffery over 1 year ago
#30 - Move path file location to temp directory
Issue -
State: open - Opened by benjeffery over 1 year ago
#30 - Move path file location to temp directory
Issue -
State: open - Opened by benjeffery over 1 year ago
#29 - Move sample matching to batch jobs
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#29 - Move sample matching to batch jobs
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#28 - Update filters.py
Pull Request -
State: closed - Opened by savitakartik over 1 year ago
- 1 comment
#28 - Update filters.py
Pull Request -
State: closed - Opened by savitakartik over 1 year ago
- 1 comment
#27 - Optionally pass through INFO fields to site metadata.
Issue -
State: open - Opened by benjeffery over 1 year ago
#27 - Optionally pass through INFO fields to site metadata.
Issue -
State: open - Opened by benjeffery over 1 year ago
#26 - Run workflow in CI
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
- 2 comments
#26 - Run workflow in CI
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
- 2 comments
#25 - Add pre-commit
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#25 - Add pre-commit
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#24 - Reorganise repo
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#24 - Reorganise repo
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#23 - Snip left and right based on post-filter site density
Issue -
State: closed - Opened by benjeffery over 1 year ago
#23 - Snip left and right based on post-filter site density
Issue -
State: closed - Opened by benjeffery over 1 year ago
#22 - Bi-allelic filter should use genotypes, not alleles.
Issue -
State: open - Opened by benjeffery over 1 year ago
#22 - Bi-allelic filter should use genotypes, not alleles.
Issue -
State: open - Opened by benjeffery over 1 year ago
#21 - Clean up the repo
Issue -
State: open - Opened by benjeffery over 1 year ago
#21 - Clean up the repo
Issue -
State: open - Opened by benjeffery over 1 year ago
#20 - Add provenance
Issue -
State: open - Opened by benjeffery over 1 year ago
#20 - Add provenance
Issue -
State: open - Opened by benjeffery over 1 year ago
#19 - Plot ancestor epoch sizes after ancestor generation
Issue -
State: open - Opened by benjeffery over 1 year ago
#19 - Plot ancestor epoch sizes after ancestor generation
Issue -
State: open - Opened by benjeffery over 1 year ago
#18 - Add low quality filter
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#18 - Add low quality filter
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#17 - individual sample IDs?
Issue -
State: closed - Opened by barneyhill over 1 year ago
- 4 comments
#17 - individual sample IDs?
Issue -
State: closed - Opened by barneyhill over 1 year ago
- 4 comments
#16 - Use xarray in subsetting
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#16 - Use xarray in subsetting
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#15 - RecursionError: maximum recursion depth exceeded
Issue -
State: closed - Opened by barneyhill over 1 year ago
- 1 comment
#15 - RecursionError: maximum recursion depth exceeded
Issue -
State: closed - Opened by barneyhill over 1 year ago
- 1 comment
#14 - Extra config options
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#14 - Extra config options
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#13 - Refactor filters
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
- 2 comments
#13 - Refactor filters
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
- 2 comments
#12 - Separate post-process
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#12 - Separate post-process
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#11 - Pin versions and add some docs
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#11 - Pin versions and add some docs
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#10 - requirements.txt versioning
Issue -
State: closed - Opened by barneyhill over 1 year ago
- 1 comment
#10 - requirements.txt versioning
Issue -
State: closed - Opened by barneyhill over 1 year ago
- 1 comment
#9 - Nton filter
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#9 - Nton filter
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#8 - Plot ac
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#8 - Plot ac
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#7 - Optional truncation
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#7 - Optional truncation
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#6 - Refactor steps to a file
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#6 - Refactor steps to a file
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#5 - Launch local workers
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#5 - Launch local workers
Pull Request -
State: closed - Opened by benjeffery over 1 year ago
#4 - Put VCF site metadata in final ts
Issue -
State: open - Opened by benjeffery over 1 year ago
#4 - Put VCF site metadata in final ts
Issue -
State: open - Opened by benjeffery over 1 year ago
#3 - Remove mismatch ratio and recombination map from ancestor matching
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 1 comment
#3 - Remove mismatch ratio and recombination map from ancestor matching
Issue -
State: closed - Opened by jeromekelleher over 1 year ago
- 1 comment
#2 - Add ancestral state to dataset
Pull Request -
State: closed - Opened by benjeffery about 2 years ago
#2 - Add ancestral state to dataset
Pull Request -
State: closed - Opened by benjeffery about 2 years ago
#1 - Use site mask and subset samples
Pull Request -
State: closed - Opened by benjeffery about 2 years ago
#1 - Use site mask and subset samples
Pull Request -
State: closed - Opened by benjeffery about 2 years ago