benedictpaten/sonLib issues and pull requests

#47 - compile problem: comparison between pointer and zero character constant [-Wpointer-compare]

Issue - State: open - Opened by taoqxtaozi over 2 years ago - 6 comments

#46 - typo fix DL -> LD

Pull Request - State: closed - Opened by mr-c over 3 years ago - 1 comment

#45 - 'make all' warning & 'make test' error: invalid syntax

Issue - State: open - Opened by sjfleck almost 4 years ago - 2 comments

#44 - Syntax error in bioio.py, line 431?

Issue - State: closed - Opened by ybukhman about 4 years ago - 1 comment

#43 - Python3

Pull Request - State: open - Opened by mr-c over 4 years ago - 1 comment

#42 - improve usage of build flags

Pull Request - State: open - Opened by mr-c over 4 years ago - 1 comment

#41 - Enable cross building

Pull Request - State: open - Opened by mr-c over 4 years ago - 1 comment

#40 - improve build parallelization

Pull Request - State: open - Opened by mr-c over 4 years ago

#39 - pointer to quicktree on github

Issue - State: open - Opened by smoe over 4 years ago

#38 - point users to https://github.com/ComparativeGenomicsToolkit/sonLib

Pull Request - State: open - Opened by diekhans over 4 years ago

#37 - sonLibTests core down

Issue - State: open - Opened by zoumingr over 4 years ago

#36 - Make build system more flexible

Pull Request - State: closed - Opened by mr-c almost 5 years ago

#35 - slower hashtable expansion

Pull Request - State: open - Opened by glennhickey over 5 years ago

#34 - Don't return types of unknown size by value to appease Clang

Pull Request - State: closed - Opened by adamnovak about 6 years ago

#33 - sonLib cannot find pthread_create

Issue - State: open - Opened by bredeson over 6 years ago - 1 comment

#32 - Please tag a recent release

Issue - State: open - Opened by SethosII over 6 years ago - 1 comment

#31 - Make pointer hashing an actual hash function

Pull Request - State: closed - Opened by adamnovak almost 7 years ago - 1 comment

#30 - The identity function is not a hash function

Issue - State: closed - Opened by adamnovak almost 7 years ago - 3 comments

#29 - make test error

Issue - State: open - Opened by Zefeng-Wu almost 8 years ago

#28 - make test error

Issue - State: open - Opened by tallnuttcsiro over 8 years ago - 10 comments

#27 - updated fastaWrite to allow unicode strings.

Pull Request - State: closed - Opened by ifiddes almost 9 years ago

#26 - Maftools doesn't compile with sonlib out of the box

Issue - State: closed - Opened by cganote almost 9 years ago - 1 comment

#25 - Dynamic connectivity part 2

Pull Request - State: closed - Opened by adderan about 9 years ago - 3 comments

#24 - Dynamic connectivity

Pull Request - State: closed - Opened by adderan about 9 years ago - 4 comments

#23 - found bug in fastaRead where lack of trailing newline leads to truncation

Pull Request - State: closed - Opened by ifiddes over 9 years ago - 3 comments

#22 - PWD is only set in shell sessions, use os.getcwd() instead

Pull Request - State: closed - Opened by hannes-ucsc over 9 years ago - 1 comment

#21 - Does not respect standard CC/CXX Makefile variables

Issue - State: open - Opened by adamnovak over 9 years ago

#20 - Smarter handling of edge cases in getTempDirectory

Pull Request - State: closed - Opened by adamnovak over 9 years ago - 1 comment

#19 - Same broken argparse issue as in jobTree,

Issue - State: closed - Opened by dentearl almost 11 years ago - 4 comments

#18 - Conversion to 64 types broke stSet and stInTuple

Issue - State: closed - Opened by dentearl almost 11 years ago - 2 comments

#17 - mafJoin Build Issue

Issue - State: closed - Opened by iminkin almost 11 years ago - 1 comment

#16 - Crash on Make Test

Issue - State: open - Opened by iminkin almost 11 years ago

#15 - Re-adding symlink which setup.py needs; it was deleted upstream.

Pull Request - State: open - Opened by adamnovak about 11 years ago - 3 comments

#14 - Python module installation files

Pull Request - State: closed - Opened by adamnovak about 11 years ago - 6 comments

#13 - Fixed placement of -lm option to link against the math library. Static l...

Pull Request - State: closed - Opened by adamnovak about 11 years ago

#12 - Fixed placement of -lm option to link against the math library.

Pull Request - State: closed - Opened by adamnovak about 11 years ago - 1 comment

#11 - Fix build issue on Ubuntu

Pull Request - State: closed - Opened by cvaske over 11 years ago - 2 comments

#10 - errors in "make test"

Issue - State: open - Opened by gbio over 11 years ago

#9 - custom Tokyo Cabinet install

Issue - State: open - Opened by amackey over 12 years ago

#8 - Compile error on Ubuntu

Issue - State: open - Opened by pjoz over 12 years ago - 2 comments

#7 - error in "make test"

Issue - State: closed - Opened by thirtyeggs almost 13 years ago - 1 comment

#6 - Adding support for Ubuntu default tokyocabinet install.

Pull Request - State: closed - Opened by robsyme about 13 years ago - 1 comment

GitHub / benedictpaten/sonLib issues and pull requests