Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / bedapub/besca issues and pull requests
#361 - Sinfo
Pull Request -
State: closed - Opened by kohleman 9 days ago
#360 - Bump idna from 3.3 to 3.7 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies
#359 - Bump tqdm from 4.63.0 to 4.66.3 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies
#358 - Bump jinja2 from 3.1.3 to 3.1.4 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies
#357 - Bump werkzeug from 3.0.1 to 3.0.3 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies
#356 - Bump requests from 2.31.0 to 2.32.2 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies
#355 - Bump aiohttp from 3.9.2 to 3.10.2 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies
#354 - Bump tornado from 6.3.3 to 6.4.1 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies
#353 - Bump torch from 1.13.1 to 2.2.0 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies
#352 - Bump scikit-learn from 1.0.2 to 1.5.0 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies
#351 - Bump urllib3 from 1.26.18 to 1.26.19 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies
#350 - Bump certifi from 2023.7.22 to 2024.7.4 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies
#349 - Bump zipp from 3.7.0 to 3.19.1 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies
#348 - updated versioneer
Pull Request -
State: closed - Opened by kohleman 9 days ago
#347 - besca installation failure
Issue -
State: open - Opened by Silencewu7 about 2 months ago
- 1 comment
#346 - error in bc.pl.riverplot_2categories() figsize param with besca253
Issue -
State: open - Opened by llumdi 4 months ago
Labels: bug
#345 - percent_mito in reality reflects the fraction not the pct
Issue -
State: open - Opened by llumdi 4 months ago
Labels: enhancement, invalid
#344 - Issue with tl.annotate_cells_cluster function
Issue -
State: open - Opened by prasadm1k 4 months ago
#343 - Bump pillow from 10.0.1 to 10.3.0 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#342 - new 10x mtx version
Issue -
State: open - Opened by wangjiawen2013 6 months ago
- 1 comment
#341 - high memory consumption and nonetype error
Issue -
State: open - Opened by wangjiawen2013 7 months ago
#340 - Update CellNames_scseqCMs6_Extrasigs.mouse.gmt
Pull Request -
State: closed - Opened by swalpe 7 months ago
#339 - Bump grpcio from 1.53.0 to 1.53.2 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies
#338 - Bump aiohttp from 3.9.0 to 3.9.2 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies
#337 - Bump pillow from 10.0.1 to 10.2.0 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
- 1 comment
Labels: dependencies
#336 - Updated dblabels to correspond to db
Pull Request -
State: closed - Opened by swalpe 9 months ago
- 1 comment
#335 - Bump jinja2 from 3.0.3 to 3.1.3 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#334 - Bump fonttools from 4.29.1 to 4.43.0 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#333 - Update doc-tests.yml
Pull Request -
State: closed - Opened by kohleman 10 months ago
#332 - Bump aiohttp from 3.8.5 to 3.9.0 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies
#331 - Bump aiohttp from 3.8.5 to 3.8.6 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 11 months ago
- 1 comment
Labels: dependencies
#330 - Bump werkzeug from 2.2.3 to 3.0.1 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies
#329 - Added cyno and kidney cell types
Pull Request -
State: closed - Opened by swalpe 11 months ago
#328 - Bump urllib3 from 1.26.8 to 1.26.18 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies
#327 - Bump pillow from 9.3.0 to 10.0.1 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies
#326 - Bump urllib3 from 1.26.8 to 1.26.17 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies
#325 - Update CellTypes_v1.tsv with cyno atlas cell types
Pull Request -
State: closed - Opened by swalpe about 1 year ago
#324 - Update CellTypes_v1.tsv
Pull Request -
State: closed - Opened by swalpe about 1 year ago
#323 - LFS quota exceeded
Issue -
State: open - Opened by idavydov about 1 year ago
- 27 comments
#322 - Bump flask from 2.0.3 to 2.2.5 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies
#321 - Updated Endothelial signatures and added neuronal cell types
Pull Request -
State: closed - Opened by swalpe about 1 year ago
#320 - Allow flavor selection in `bc.st.highly_variable_genes()`
Issue -
State: open - Opened by llumdi about 1 year ago
Labels: enhancement, std workflow
#319 - Bump tornado from 6.3.2 to 6.3.3 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies
#318 - Adjusted HVG with batch selection
Pull Request -
State: closed - Opened by kohleman about 1 year ago
#317 - Move to poetry as a dependency manager
Issue -
State: open - Opened by kohleman about 1 year ago
#316 - Update CellTypes_v1.tsv
Pull Request -
State: closed - Opened by hatjek about 1 year ago
#315 - Bump certifi from 2022.12.7 to 2023.7.22 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies
#314 - Bump aiohttp from 3.8.1 to 3.8.5 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies
#313 - Bump pygments from 2.11.2 to 2.15.0 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies
#312 - `use_raw=False` not working in bc.tl.sig.combined_signature_score( )
Issue -
State: open - Opened by llumdi about 1 year ago
Labels: bug
#311 - Adjusted HVG with batch selection
Pull Request -
State: closed - Opened by swalpe about 1 year ago
#310 - 309 re uploaded crispr data set to zenodo
Pull Request -
State: closed - Opened by kohleman about 1 year ago
#309 - re-uploaded Crispr data set to zenodo
Issue -
State: closed - Opened by kohleman about 1 year ago
#308 - Bump scipy from 1.8.0 to 1.10.0 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies
#307 - Bump grpcio from 1.44.0 to 1.53.0 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies
#306 - Use `cnamesDBlabel` instead of `cnames` to achieve consistency
Pull Request -
State: closed - Opened by matchy233 about 1 year ago
#305 - Update requirements.txt
Pull Request -
State: closed - Opened by kohleman about 1 year ago
#304 - Update requirements.txt
Pull Request -
State: closed - Opened by kohleman about 1 year ago
#303 - Update requirements.txt
Pull Request -
State: closed - Opened by kohleman about 1 year ago
#302 - Fix/doctest
Pull Request -
State: closed - Opened by kohleman about 1 year ago
#301 - Wrongly use `cnames` instead of `cnamesDBlabel` for annotation after reclustering
Issue -
State: closed - Opened by matchy233 over 1 year ago
#300 - Fix empty `levsk` while reading annotation config for pandas 2.0
Pull Request -
State: closed - Opened by matchy233 over 1 year ago
#299 - `IndexError: list index out of range` while running the cell annotation workbook
Issue -
State: closed - Opened by matchy233 over 1 year ago
- 2 comments
#298 - env yaml file
Issue -
State: open - Opened by schmucr1 over 1 year ago
- 2 comments
#297 - fixed small bug in export pseudobulk raw
Pull Request -
State: closed - Opened by swalpe over 1 year ago
#296 - Bump tornado from 6.1 to 6.3.2 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 2 comments
Labels: dependencies
#295 - Bump requests from 2.27.1 to 2.31.0 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies
#294 - Bump flask from 2.0.3 to 2.3.2 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies
#293 - Added keratinocyte and melanocyte sig and fixed neutrophil #289
Pull Request -
State: closed - Opened by swalpe over 1 year ago
#292 - 20230417 david stdwf format
Pull Request -
State: closed - Opened by Accio over 1 year ago
- 2 comments
#291 - Update CellTypes_v1.tsv
Pull Request -
State: closed - Opened by swalpe over 1 year ago
#290 - Added B myelo cell doublet as cell type
Pull Request -
State: closed - Opened by swalpe over 1 year ago
#289 - Error in neutrophil signature
Issue -
State: closed - Opened by llumdi over 1 year ago
- 1 comment
#288 - Fixed split_gene_expression bug related to figsize
Pull Request -
State: closed - Opened by swalpe over 1 year ago
#287 - Crispr
Pull Request -
State: closed - Opened by Kladise over 1 year ago
#286 - BIOINFO-1939: small bug fix
Pull Request -
State: closed - Opened by kohleman over 1 year ago
#285 - Crispr Quality Control functions Besca
Pull Request -
State: closed - Opened by kohleman over 1 year ago
#284 - Bump werkzeug from 2.0.3 to 2.2.3 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies
#283 - Bump ipython from 8.1.1 to 8.10.0 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies
#282 - Update doc-tests.yml
Pull Request -
State: closed - Opened by paulgeser over 1 year ago
#281 - #280 fixed riverplot height and width
Pull Request -
State: closed - Opened by kohleman over 1 year ago
#280 - Riverplot: Figure height and width not usable
Issue -
State: closed - Opened by kohleman over 1 year ago
Labels: bug
#279 - Update doc-tests.yml
Pull Request -
State: closed - Opened by kohleman over 1 year ago
#278 - Bump torch from 1.10.2 to 1.13.1 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies
#277 - Bump future from 0.18.2 to 0.18.3 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies
#276 - Bump oauthlib from 3.2.1 to 3.2.2 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies
#275 - Pseudobulk from raw counts
Pull Request -
State: closed - Opened by hatjek over 1 year ago
#274 - Update _export.py
Pull Request -
State: closed - Opened by hatjek over 1 year ago
- 1 comment
#273 - Small fix in cell annotation workbook as per #271
Pull Request -
State: closed - Opened by swalpe over 1 year ago
#272 - Storing public data sets in installation directory is problematic
Issue -
State: open - Opened by schmucr1 over 1 year ago
#271 - KeyError: 'base' when using bc.tl.dge.get_de() or bc.st.additional_labeling()
Issue -
State: open - Opened by llumdi almost 2 years ago
- 3 comments
Labels: bug
#270 - Bump certifi from 2021.10.8 to 2022.12.7 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies
#269 - Installation fail: unable to resolve dependencies
Issue -
State: closed - Opened by jpiggod almost 2 years ago
- 2 comments
#268 - Bump jupyter-core from 4.9.2 to 4.11.2 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] almost 2 years ago
- 1 comment
Labels: dependencies
#267 - CellTypes_v1.tsv
Pull Request -
State: closed - Opened by llumdi almost 2 years ago
#266 - Bump pillow from 9.0.1 to 9.3.0 in /devtools
Pull Request -
State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies
#265 - Remove duplicated log messages
Issue -
State: open - Opened by kohleman almost 2 years ago
- 2 comments
#264 - Update _read.py
Pull Request -
State: closed - Opened by hatjek almost 2 years ago
#263 - #262 modified regex to accept '-' in gene names
Pull Request -
State: closed - Opened by kohleman almost 2 years ago
#262 - Allow a '-' in gene names
Issue -
State: closed - Opened by kohleman almost 2 years ago
Labels: bug