Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / bedapub/besca issues and pull requests

#361 - Sinfo

Pull Request - State: closed - Opened by kohleman 9 days ago

#360 - Bump idna from 3.3 to 3.7 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies

#359 - Bump tqdm from 4.63.0 to 4.66.3 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies

#358 - Bump jinja2 from 3.1.3 to 3.1.4 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies

#357 - Bump werkzeug from 3.0.1 to 3.0.3 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies

#356 - Bump requests from 2.31.0 to 2.32.2 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies

#355 - Bump aiohttp from 3.9.2 to 3.10.2 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies

#354 - Bump tornado from 6.3.3 to 6.4.1 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies

#353 - Bump torch from 1.13.1 to 2.2.0 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies

#352 - Bump scikit-learn from 1.0.2 to 1.5.0 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies

#351 - Bump urllib3 from 1.26.18 to 1.26.19 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies

#350 - Bump certifi from 2023.7.22 to 2024.7.4 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies

#349 - Bump zipp from 3.7.0 to 3.19.1 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 9 days ago
Labels: dependencies

#348 - updated versioneer

Pull Request - State: closed - Opened by kohleman 9 days ago

#347 - besca installation failure

Issue - State: open - Opened by Silencewu7 about 2 months ago - 1 comment

#346 - error in bc.pl.riverplot_2categories() figsize param with besca253

Issue - State: open - Opened by llumdi 4 months ago
Labels: bug

#345 - percent_mito in reality reflects the fraction not the pct

Issue - State: open - Opened by llumdi 4 months ago
Labels: enhancement, invalid

#344 - Issue with tl.annotate_cells_cluster function

Issue - State: open - Opened by prasadm1k 4 months ago

#343 - Bump pillow from 10.0.1 to 10.3.0 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#342 - new 10x mtx version

Issue - State: open - Opened by wangjiawen2013 6 months ago - 1 comment

#341 - high memory consumption and nonetype error

Issue - State: open - Opened by wangjiawen2013 7 months ago

#340 - Update CellNames_scseqCMs6_Extrasigs.mouse.gmt

Pull Request - State: closed - Opened by swalpe 7 months ago

#339 - Bump grpcio from 1.53.0 to 1.53.2 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#338 - Bump aiohttp from 3.9.0 to 3.9.2 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#337 - Bump pillow from 10.0.1 to 10.2.0 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#336 - Updated dblabels to correspond to db

Pull Request - State: closed - Opened by swalpe 9 months ago - 1 comment

#335 - Bump jinja2 from 3.0.3 to 3.1.3 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#334 - Bump fonttools from 4.29.1 to 4.43.0 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#333 - Update doc-tests.yml

Pull Request - State: closed - Opened by kohleman 10 months ago

#332 - Bump aiohttp from 3.8.5 to 3.9.0 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies

#331 - Bump aiohttp from 3.8.5 to 3.8.6 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies

#330 - Bump werkzeug from 2.2.3 to 3.0.1 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#329 - Added cyno and kidney cell types

Pull Request - State: closed - Opened by swalpe 11 months ago

#328 - Bump urllib3 from 1.26.8 to 1.26.18 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#327 - Bump pillow from 9.3.0 to 10.0.1 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#326 - Bump urllib3 from 1.26.8 to 1.26.17 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#325 - Update CellTypes_v1.tsv with cyno atlas cell types

Pull Request - State: closed - Opened by swalpe about 1 year ago

#324 - Update CellTypes_v1.tsv

Pull Request - State: closed - Opened by swalpe about 1 year ago

#323 - LFS quota exceeded

Issue - State: open - Opened by idavydov about 1 year ago - 27 comments

#322 - Bump flask from 2.0.3 to 2.2.5 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#321 - Updated Endothelial signatures and added neuronal cell types

Pull Request - State: closed - Opened by swalpe about 1 year ago

#320 - Allow flavor selection in `bc.st.highly_variable_genes()`

Issue - State: open - Opened by llumdi about 1 year ago
Labels: enhancement, std workflow

#319 - Bump tornado from 6.3.2 to 6.3.3 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#318 - Adjusted HVG with batch selection

Pull Request - State: closed - Opened by kohleman about 1 year ago

#317 - Move to poetry as a dependency manager

Issue - State: open - Opened by kohleman about 1 year ago

#316 - Update CellTypes_v1.tsv

Pull Request - State: closed - Opened by hatjek about 1 year ago

#315 - Bump certifi from 2022.12.7 to 2023.7.22 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#314 - Bump aiohttp from 3.8.1 to 3.8.5 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#313 - Bump pygments from 2.11.2 to 2.15.0 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#312 - `use_raw=False` not working in bc.tl.sig.combined_signature_score( )

Issue - State: open - Opened by llumdi about 1 year ago
Labels: bug

#311 - Adjusted HVG with batch selection

Pull Request - State: closed - Opened by swalpe about 1 year ago

#310 - 309 re uploaded crispr data set to zenodo

Pull Request - State: closed - Opened by kohleman about 1 year ago

#309 - re-uploaded Crispr data set to zenodo

Issue - State: closed - Opened by kohleman about 1 year ago

#308 - Bump scipy from 1.8.0 to 1.10.0 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#307 - Bump grpcio from 1.44.0 to 1.53.0 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#306 - Use `cnamesDBlabel` instead of `cnames` to achieve consistency

Pull Request - State: closed - Opened by matchy233 about 1 year ago

#305 - Update requirements.txt

Pull Request - State: closed - Opened by kohleman about 1 year ago

#304 - Update requirements.txt

Pull Request - State: closed - Opened by kohleman about 1 year ago

#303 - Update requirements.txt

Pull Request - State: closed - Opened by kohleman about 1 year ago

#302 - Fix/doctest

Pull Request - State: closed - Opened by kohleman about 1 year ago

#300 - Fix empty `levsk` while reading annotation config for pandas 2.0

Pull Request - State: closed - Opened by matchy233 over 1 year ago

#298 - env yaml file

Issue - State: open - Opened by schmucr1 over 1 year ago - 2 comments

#297 - fixed small bug in export pseudobulk raw

Pull Request - State: closed - Opened by swalpe over 1 year ago

#296 - Bump tornado from 6.1 to 6.3.2 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#295 - Bump requests from 2.27.1 to 2.31.0 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#294 - Bump flask from 2.0.3 to 2.3.2 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#293 - Added keratinocyte and melanocyte sig and fixed neutrophil #289

Pull Request - State: closed - Opened by swalpe over 1 year ago

#292 - 20230417 david stdwf format

Pull Request - State: closed - Opened by Accio over 1 year ago - 2 comments

#291 - Update CellTypes_v1.tsv

Pull Request - State: closed - Opened by swalpe over 1 year ago

#290 - Added B myelo cell doublet as cell type

Pull Request - State: closed - Opened by swalpe over 1 year ago

#289 - Error in neutrophil signature

Issue - State: closed - Opened by llumdi over 1 year ago - 1 comment

#288 - Fixed split_gene_expression bug related to figsize

Pull Request - State: closed - Opened by swalpe over 1 year ago

#287 - Crispr

Pull Request - State: closed - Opened by Kladise over 1 year ago

#286 - BIOINFO-1939: small bug fix

Pull Request - State: closed - Opened by kohleman over 1 year ago

#285 - Crispr Quality Control functions Besca

Pull Request - State: closed - Opened by kohleman over 1 year ago

#284 - Bump werkzeug from 2.0.3 to 2.2.3 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#283 - Bump ipython from 8.1.1 to 8.10.0 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#282 - Update doc-tests.yml

Pull Request - State: closed - Opened by paulgeser over 1 year ago

#281 - #280 fixed riverplot height and width

Pull Request - State: closed - Opened by kohleman over 1 year ago

#280 - Riverplot: Figure height and width not usable

Issue - State: closed - Opened by kohleman over 1 year ago
Labels: bug

#279 - Update doc-tests.yml

Pull Request - State: closed - Opened by kohleman over 1 year ago

#278 - Bump torch from 1.10.2 to 1.13.1 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#277 - Bump future from 0.18.2 to 0.18.3 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#276 - Bump oauthlib from 3.2.1 to 3.2.2 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#275 - Pseudobulk from raw counts

Pull Request - State: closed - Opened by hatjek over 1 year ago

#274 - Update _export.py

Pull Request - State: closed - Opened by hatjek over 1 year ago - 1 comment

#273 - Small fix in cell annotation workbook as per #271

Pull Request - State: closed - Opened by swalpe over 1 year ago

#271 - KeyError: 'base' when using bc.tl.dge.get_de() or bc.st.additional_labeling()

Issue - State: open - Opened by llumdi almost 2 years ago - 3 comments
Labels: bug

#270 - Bump certifi from 2021.10.8 to 2022.12.7 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#269 - Installation fail: unable to resolve dependencies

Issue - State: closed - Opened by jpiggod almost 2 years ago - 2 comments

#268 - Bump jupyter-core from 4.9.2 to 4.11.2 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#267 - CellTypes_v1.tsv

Pull Request - State: closed - Opened by llumdi almost 2 years ago

#266 - Bump pillow from 9.0.1 to 9.3.0 in /devtools

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#265 - Remove duplicated log messages

Issue - State: open - Opened by kohleman almost 2 years ago - 2 comments

#264 - Update _read.py

Pull Request - State: closed - Opened by hatjek almost 2 years ago

#263 - #262 modified regex to accept '-' in gene names

Pull Request - State: closed - Opened by kohleman almost 2 years ago

#262 - Allow a '-' in gene names

Issue - State: closed - Opened by kohleman almost 2 years ago
Labels: bug