Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / becksteinlab/zarrtraj issues and pull requests

#72 - Scalar data

Pull Request - State: open - Opened by ljwoods2 19 days ago - 1 comment

#71 - Zarrtraj fails on writing scalar ts.data keys

Issue - State: open - Opened by ljwoods2 19 days ago

#70 - add rjg affiliation

Pull Request - State: closed - Opened by richardjgowers 29 days ago - 1 comment

#69 - add CITATION.cff file

Issue - State: closed - Opened by orbeckst about 1 month ago - 2 comments

#68 - JOSS Paper revisions

Pull Request - State: closed - Opened by ljwoods2 about 2 months ago - 11 comments

#67 - Simplify cache

Pull Request - State: closed - Opened by ljwoods2 about 2 months ago - 1 comment

#66 - JOSS Paper

Pull Request - State: closed - Opened by ljwoods2 2 months ago - 2 comments

#65 - Add binder notebook as a demo

Issue - State: open - Opened by hmacdope 3 months ago
Labels: user experience

#64 - Support for more exotic codecs

Issue - State: open - Opened by hmacdope 3 months ago
Labels: enhancement

#63 - Test performance reading across multiple nodes

Issue - State: open - Opened by hmacdope 3 months ago
Labels: testing

#61 - Allow writing of H5MD to remote

Issue - State: open - Opened by hmacdope 3 months ago
Labels: enhancement

#60 - Relax AWS deps & Skip tests

Pull Request - State: closed - Opened by ljwoods2 4 months ago - 1 comment

#59 - Variable number of atoms / changes in PBC

Issue - State: open - Opened by PythonFZ 4 months ago - 2 comments

#58 - v0.2.1

Pull Request - State: closed - Opened by ljwoods2 4 months ago - 1 comment

#56 - Register as an MDAKit

Issue - State: closed - Opened by hmacdope 4 months ago - 2 comments

#55 - Doc updates- typos and clarifications

Pull Request - State: closed - Opened by ljwoods2 4 months ago - 1 comment

#54 - Updating documentation and cleaning up unused files

Pull Request - State: closed - Opened by ljwoods2 4 months ago - 1 comment

#53 - Benchmarks dev

Pull Request - State: closed - Opened by ljwoods2 4 months ago - 1 comment

#52 - Small bug and docs fixes

Pull Request - State: closed - Opened by ljwoods2 4 months ago - 1 comment

#51 - Does sharding make a difference?

Issue - State: open - Opened by hmacdope 4 months ago - 1 comment

#50 - Allow reading directly from HTTPS endpoint using fsspec

Issue - State: open - Opened by hmacdope 4 months ago
Labels: enhancement, priority:high

#49 - Docs Updates

Pull Request - State: closed - Opened by ljwoods2 5 months ago - 1 comment

#48 - Fix RTD build failure

Pull Request - State: closed - Opened by ljwoods2 5 months ago - 1 comment

#46 - Precision and Compressors added back!

Pull Request - State: closed - Opened by ljwoods2 5 months ago

#45 - Relax package version requirements

Issue - State: closed - Opened by ljwoods2 5 months ago - 1 comment

#44 - Docs Updates from Rewrite of Zarrtraj to H5MD Format

Pull Request - State: closed - Opened by ljwoods2 5 months ago - 1 comment

#43 - Remove Kerchunk Linked Dsets Patch

Pull Request - State: closed - Opened by ljwoods2 5 months ago - 1 comment

#42 - Minimal examples of R+W from disk in both H5MD and ZARR format.

Issue - State: closed - Opened by hmacdope 5 months ago - 1 comment

#41 - Clean up misc files for new release.

Issue - State: closed - Opened by hmacdope 5 months ago

#39 - Get docs up and running

Issue - State: closed - Opened by hmacdope 5 months ago

#38 - Fix CI

Issue - State: closed - Opened by hmacdope 5 months ago

#37 - Make tests run faster

Pull Request - State: closed - Opened by ljwoods2 5 months ago - 1 comment

#36 - ZARRMDWriter + Tests (reopened pr)

Pull Request - State: closed - Opened by ljwoods2 5 months ago - 1 comment

#35 - ZARRMDReader + Tests

Pull Request - State: closed - Opened by ljwoods2 5 months ago - 1 comment

#35 - ZARRMDReader + Tests

Pull Request - State: closed - Opened by ljwoods2 5 months ago - 1 comment

#34 - H5MD format rewrite of Zarrtraj

Pull Request - State: closed - Opened by ljwoods2 5 months ago

#33 - Write new tests for H5MD format

Issue - State: closed - Opened by ljwoods2 6 months ago

#33 - Write new tests for H5MD format

Issue - State: closed - Opened by ljwoods2 6 months ago

#32 - Zarr 3.0 Wishlist

Issue - State: open - Opened by ljwoods2 6 months ago - 1 comment

#32 - Zarr 3.0 Wishlist

Issue - State: open - Opened by ljwoods2 6 months ago - 1 comment

#31 - windows tests timing out

Issue - State: closed - Opened by orbeckst 6 months ago
Labels: bug

#31 - windows tests timing out

Issue - State: closed - Opened by orbeckst 6 months ago
Labels: bug

#30 - Benchmark zarrtraj's performance on disk

Issue - State: closed - Opened by ljwoods2 6 months ago - 1 comment

#29 - Write minimal tests to ensure google cloud and azure work with zarrtraj

Issue - State: open - Opened by ljwoods2 6 months ago
Labels: GSOC

#28 - Upload MDAnalysisTests data to a free S3 bucket

Issue - State: open - Opened by ljwoods2 6 months ago
Labels: GSOC

#27 - Update docs with fsspec URL integration

Issue - State: closed - Opened by ljwoods2 6 months ago - 1 comment
Labels: GSOC

#26 - Tests failing due to misuse of "rmdir"

Issue - State: closed - Opened by ljwoods2 6 months ago

#25 - Implement random-access via an asynchronous reader

Issue - State: open - Opened by ljwoods2 6 months ago
Labels: GSOC

#24 - Create zarr-only and zarr + dask benchmarks of trajectory reading

Issue - State: closed - Opened by ljwoods2 6 months ago - 1 comment
Labels: GSOC

#23 - [WIP] v0.1.1

Pull Request - State: closed - Opened by ljwoods2 6 months ago

#21 - Initial release

Pull Request - State: closed - Opened by ljwoods2 7 months ago - 1 comment

#20 - remove official logos

Pull Request - State: closed - Opened by orbeckst 7 months ago - 1 comment

#19 - create initial release

Issue - State: closed - Opened by orbeckst 7 months ago

#18 - Change input from zarr.Group to fsspec string

Issue - State: closed - Opened by ljwoods2 7 months ago

#17 - Documentation fix

Pull Request - State: closed - Opened by ljwoods2 7 months ago

#16 - Develop

Pull Request - State: closed - Opened by ljwoods2 7 months ago - 1 comment

#15 - reopen method possible not implemnted correctly

Issue - State: closed - Opened by ljwoods2 7 months ago

#14 - More efficient buffering algorithms

Issue - State: open - Opened by ljwoods2 7 months ago

#13 - Formatting tests failing

Issue - State: closed - Opened by ljwoods2 7 months ago - 1 comment

#10 - Subselection in ZarrTrajWriter not implemented

Issue - State: closed - Opened by ljwoods2 7 months ago - 1 comment

#9 - Writing observables in ZarrTrajWriter not implemented

Issue - State: closed - Opened by ljwoods2 7 months ago

#8 - New spec

Pull Request - State: closed - Opened by ljwoods2 7 months ago - 1 comment

#7 - Cloud testing

Pull Request - State: closed - Opened by ljwoods2 7 months ago

#6 - Preparing for initial release [WIP]

Pull Request - State: closed - Opened by ljwoods2 9 months ago - 1 comment

#5 - zarrtraj writer

Issue - State: closed - Opened by orbeckst 9 months ago

#4 - Benchmark your MDAnalysis reader.

Issue - State: closed - Opened by hmacdope 11 months ago - 1 comment

#3 - Benchmark your format in its raw form

Issue - State: closed - Opened by hmacdope 11 months ago - 2 comments

#2 - Write an MDAnalysis reader for your proposed format

Issue - State: closed - Opened by hmacdope 11 months ago - 2 comments

#1 - Scope out structure of format with example notebook and document

Issue - State: closed - Opened by hmacdope 11 months ago - 2 comments
Labels: documentation