Ecosyste.ms: Issues

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GitHub / beatrizserrano/galaxy-image-community issues and pull requests

#28 - Improve granularity of EDAM annotations

Issue - State: open - Opened by beatrizserrano 24 days ago - 1 comment

#28 - Improve granularity of EDAM annotations

Issue - State: open - Opened by beatrizserrano 24 days ago - 1 comment

#27 - Adapt image analysis tools to consume OME-Zarr

Issue - State: open - Opened by beatrizserrano 24 days ago - 1 comment
Labels: tools dev

#27 - Adapt image analysis tools to consume OME-Zarr

Issue - State: open - Opened by beatrizserrano 24 days ago - 1 comment
Labels: tools dev

#26 - Update documentation for the 'Process image using a BioImage.IO model' Galaxy tool

Issue - State: open - Opened by B0r1sD 24 days ago - 14 comments
Labels: tools dev, BHEU24

#26 - Update documentation for the 'Process image using a BioImage.IO model' Galaxy tool

Issue - State: open - Opened by B0r1sD 24 days ago - 14 comments
Labels: tools dev, BHEU24

#25 - Add Galaxy as a BioImage Model Zoo community partner

Issue - State: open - Opened by B0r1sD 24 days ago - 2 comments
Labels: tools dev, investigation, BHEU24

#25 - Add Galaxy as a BioImage Model Zoo community partner

Issue - State: open - Opened by B0r1sD 24 days ago - 2 comments
Labels: tools dev, investigation, BHEU24

#24 - QuPath Galaxy tools

Issue - State: open - Opened by annefou 27 days ago - 2 comments
Labels: tools dev, ingredient

#24 - QuPath Galaxy tools

Issue - State: open - Opened by annefou 27 days ago - 2 comments
Labels: tools dev, ingredient

#23 - QuPath Galaxy Tools

Issue - State: closed - Opened by annefou 27 days ago
Labels: Invalid

#23 - QuPath Galaxy Tools

Issue - State: closed - Opened by annefou 27 days ago
Labels: Invalid

#22 - Create a page on the Galaxy Community Hub

Issue - State: closed - Opened by beatrizserrano about 2 months ago - 7 comments
Labels: outreach, BHEU24

#22 - Create a page on the Galaxy Community Hub

Issue - State: closed - Opened by beatrizserrano about 2 months ago - 7 comments
Labels: outreach, BHEU24

#21 - Replicate workflow for nuclei segmentation and shape measurements

Issue - State: open - Opened by sunyi000 2 months ago
Labels: tutorials dev, workflows dev

#21 - Replicate workflow for nuclei segmentation and shape measurements

Issue - State: open - Opened by sunyi000 2 months ago
Labels: tutorials dev, workflows dev

#20 - Update the "Introduction to image analysis using Galaxy" and "HeLa screen analysis" tutorials

Issue - State: closed - Opened by kostrykin 2 months ago - 1 comment
Labels: tutorials dev, BHEU24

#19 - Create outreach slide deck

Issue - State: open - Opened by beatrizserrano 4 months ago - 1 comment
Labels: investigation, outreach, BHEU24

#18 - Write tutorial using AI model from bioimage.io

Issue - State: closed - Opened by beatrizserrano 4 months ago - 2 comments
Labels: Invalid

#18 - Write tutorial using AI model from bioimage.io

Issue - State: closed - Opened by beatrizserrano 4 months ago - 2 comments
Labels: Invalid

#17 - Add OMERO as a File source

Issue - State: open - Opened by beatrizserrano 4 months ago
Labels: ingredient

#16 - Simplified CellProfiler tutorial

Issue - State: open - Opened by beatrizserrano 4 months ago
Labels: tutorials dev, workflows dev

#15 - Write tutorial for Cellpose (and maybe create workflow)

Issue - State: open - Opened by kostrykin 5 months ago
Labels: tutorials dev, investigation

#14 - Load images from private OMERO

Issue - State: open - Opened by kostrykin 5 months ago
Labels: ingredient

#13 - Load images from the BIA (GTN)

Issue - State: open - Opened by kostrykin 5 months ago - 2 comments
Labels: ingredient

#12 - Submit images to the BIA

Issue - State: open - Opened by kostrykin 5 months ago
Labels: ingredient

#11 - Refactor the BIA retrieval tool

Issue - State: open - Opened by kostrykin 5 months ago - 12 comments
Labels: tools dev, BHEU24

#10 - Fostering tool user feedback

Issue - State: open - Opened by kostrykin 5 months ago
Labels: investigation

#9 - Write tutorial for inference using Bioimage models in Galaxy

Issue - State: open - Opened by kostrykin 5 months ago
Labels: tutorials dev

#8 - Write tutorial for registration of MALDI and histology images

Issue - State: open - Opened by kostrykin 5 months ago - 8 comments
Labels: tutorials dev, interdisciplinary, BHEU24

#7 - Write tutorial for detection of mitoflashes

Issue - State: open - Opened by kostrykin 5 months ago - 4 comments
Labels: tutorials dev, BHEU24

#6 - Write tutorials for Voronoi segmentation

Issue - State: open - Opened by kostrykin 5 months ago - 3 comments
Labels: tutorials dev, BHEU24

#5 - Update IWC workflow for segmentation and cell counting

Issue - State: closed - Opened by kostrykin 5 months ago
Labels: workflows dev, BHEU24

#4 - Create workflow for OMERO/IDR + Ilastik + CellProfiler

Issue - State: open - Opened by kostrykin 5 months ago
Labels: tutorials dev, workflows dev

#3 - Create workflow for AI-based image analysis

Issue - State: open - Opened by kostrykin 5 months ago - 1 comment
Labels: tutorials dev, workflows dev

#2 - Gather list of workflows

Issue - State: open - Opened by kostrykin 5 months ago - 1 comment
Labels: investigation

#1 - Gather list of tools

Issue - State: closed - Opened by kostrykin 5 months ago - 2 comments
Labels: investigation, BHEU24