Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / beagle-dev/beagle-lib issues and pull requests

#224 - The GPU could not be found in the HPC

Issue - State: closed - Opened by pikkazz 2 months ago - 3 comments

#223 - install beagle error

Issue - State: closed - Opened by pathogen-detection 5 months ago - 1 comment

#222 - Error when using GPU acceleration

Issue - State: closed - Opened by mlzhangli 5 months ago - 6 comments

#221 - Error running MrBayes with CUDA

Issue - State: closed - Opened by obbrz 6 months ago - 1 comment

#220 - Could NOT find JNI

Issue - State: open - Opened by brmagalis 6 months ago - 2 comments

#219 - Multi-treading for action

Pull Request - State: closed - Opened by xji3 7 months ago

#218 - CUDA error

Issue - State: closed - Opened by pikkazz 7 months ago - 1 comment

#217 - How to maximize the computing power of GPU?

Issue - State: open - Opened by liamxg 9 months ago

#216 - CMake: Don't look for OpenCL and CUDA packages if build isn't using them

Pull Request - State: closed - Opened by swofford 9 months ago - 1 comment

#215 - Assembly fragment fails to compile with clang -O3

Issue - State: open - Opened by bredelings 9 months ago - 1 comment

#214 - Add GitHub actions to test build on various architectures.

Pull Request - State: closed - Opened by bredelings 9 months ago - 1 comment

#213 - Fix action bug on Linux

Pull Request - State: closed - Opened by bredelings 10 months ago

#212 - Fix problem computing m and s on Linux

Pull Request - State: closed - Opened by bredelings 10 months ago

#211 - hmctest: symbol lookup error

Issue - State: closed - Opened by ypchan 11 months ago - 1 comment

#210 - Installed Beauti but BEAST does not recognize

Issue - State: closed - Opened by StephanieRodrigues 11 months ago - 10 comments

#209 - Error while executing BEAST through Singularity container

Issue - State: closed - Opened by pehenrique about 1 year ago - 13 comments

#208 - faile to make test for linux-aarch64

Issue - State: closed - Opened by yejianbang about 1 year ago - 3 comments

#207 - build error for 4.0.1 with cuda

Issue - State: closed - Opened by starsareintherose about 1 year ago - 1 comment

#206 - Update sse2neon.h to latest for better support for Linux ARM64

Pull Request - State: closed - Opened by martin-g about 1 year ago - 12 comments

#205 - How to support linux-aarch64?

Issue - State: open - Opened by yangxingyu588 about 1 year ago

#204 - Error making Beagle library with CUDA option in Kaggle

Issue - State: open - Opened by CSTE7007 about 1 year ago

#203 - anything need update?

Issue - State: closed - Opened by liamxg about 1 year ago

#202 - error when running "cmake -DBUILD_CUDA=OFF -DBUILD_OPENCL=OFF .."

Issue - State: closed - Opened by liamxg about 1 year ago - 2 comments

#201 - BEAGLE only detects CPU as resource in HPC cluster

Issue - State: closed - Opened by javiefernandez over 1 year ago

#200 - Implement isSet() for BEAGLE flags in Java InstanceDetails and ResourceDetails classes

Issue - State: open - Opened by rambaut over 1 year ago
Labels: enhancement

#199 - Reporting number of CPU threads being used

Issue - State: open - Opened by rambaut over 1 year ago
Labels: enhancement

#198 - Failed to pass `make test`

Issue - State: closed - Opened by Xiaojun928 over 1 year ago - 4 comments

#197 - BEAGLE doesn't use GPU in BEAST2

Issue - State: closed - Opened by Zeroo11 over 1 year ago - 1 comment

#196 - Install pkg config

Pull Request - State: closed - Opened by bredelings over 1 year ago

#195 - Install pkg-config file

Issue - State: closed - Opened by bredelings over 1 year ago

#193 - CUDA error: "Unknown error" (222) when using beagle

Issue - State: closed - Opened by yashaektefaie almost 2 years ago - 1 comment

#192 - No acceptable BEAGLE library plugins found

Issue - State: closed - Opened by paigemaroni almost 2 years ago - 2 comments

#191 - BEAGLE doesn't see GPU in BEAST2

Issue - State: closed - Opened by trilisser almost 2 years ago - 2 comments

#190 - Error File INSTALL

Issue - State: closed - Opened by wbender1 almost 2 years ago - 2 comments

#188 - JNI missing AWT compilation error

Issue - State: closed - Opened by jhcuarta about 2 years ago - 2 comments

#187 - need 1.8.2 version for windows os

Issue - State: open - Opened by sharmavarun840 about 2 years ago

#186 - OpenCL error: Failed to build kernels

Issue - State: open - Opened by ajodeh-juma about 2 years ago

#185 - Beagle4 Fails to compile on Ubuntu 20.04 - opencl.h file missing

Issue - State: closed - Opened by cement-head about 2 years ago - 4 comments

#183 - Reinstate versioning for libhmsbeagle

Pull Request - State: closed - Opened by thanasibakis over 2 years ago

#182 - Is libhmsbeagle no longer versioned?

Issue - State: closed - Opened by thanasibakis over 2 years ago - 6 comments

#180 - BEAGLE: No acceptable BEAGLE library plugins found on M1 Mac

Issue - State: closed - Opened by bastiaanvdroest over 2 years ago - 1 comment

#179 - BEAGLE3 fails to install on Pop_OS 22.04 (Ubuntu 22.04)

Issue - State: closed - Opened by cement-head over 2 years ago - 2 comments

#178 - "BEAGLE v4.0.0 for macOS universal" link is broken on github page

Issue - State: closed - Opened by davidcannatella over 2 years ago - 3 comments

#177 - BEAST 1.10.4 shows BEAGLE library installed but no resources available

Issue - State: closed - Opened by comradesoup over 2 years ago - 7 comments

#176 - BEAGLE 4.0.0 release page link is broken

Issue - State: closed - Opened by comradesoup over 2 years ago

#174 - BEAGLE do not see and/or not use OpenCL

Issue - State: closed - Opened by MordorianGuy over 2 years ago

#173 - Mr Bayes chains stuck

Issue - State: closed - Opened by joqb almost 3 years ago

#172 - Can't choose GPU to BEAST XML on windows system

Issue - State: open - Opened by VeterinaryLi almost 3 years ago - 1 comment

#171 - Broken links in Readme.md

Issue - State: open - Opened by heibl almost 3 years ago

#170 - Apple Silicon M1 series support

Issue - State: closed - Opened by sam-mic almost 3 years ago - 9 comments

#169 - Error making Beagle library with CUDA option - WSL_Ubuntu_20.04

Issue - State: open - Opened by gardnerbp almost 3 years ago - 3 comments

#167 - ./autogen.sh: No such file or directory

Issue - State: closed - Opened by med-ss20 about 3 years ago - 14 comments

#166 - GPU efficiency

Issue - State: closed - Opened by kpetrov about 3 years ago

#165 - Fix macOS rpath for non-default prefixes

Pull Request - State: closed - Opened by jonchang over 3 years ago - 1 comment

#164 - Assistance on deploying beast + beagle lib

Issue - State: closed - Opened by Aymenchaalia over 3 years ago - 1 comment

#163 - Configure error with java

Issue - State: closed - Opened by tomdugal over 3 years ago

#162 - version 3.2.0?

Issue - State: closed - Opened by 0xaf1f over 3 years ago

#161 - CUDA related issue during 'make'

Issue - State: closed - Opened by pwkooij over 3 years ago - 1 comment

#160 - OpenCL error: Unknown error from file <GPUInterfaceOpenCL.cpp>, line 115

Issue - State: closed - Opened by romale over 3 years ago - 1 comment

#159 - Mac binary installer version fails with OpenJDKs

Issue - State: open - Opened by rambaut over 3 years ago - 2 comments
Labels: bug, OpSys-OSX

#158 - Add CONFIGURE parameter to specify NVIDIA cards generation upon config

Issue - State: open - Opened by nlabrad over 3 years ago - 2 comments

#157 - Towards Beagle+OpenCL on a Raspberry Pi

Issue - State: open - Opened by Anaphory almost 4 years ago - 4 comments

#156 - Compiling Beagle on Raspian: CPU plugin not found

Issue - State: open - Opened by Anaphory almost 4 years ago

#155 - configure --without-opencl still gives OpenCL error in synthetictest.sh (Raspian)

Issue - State: closed - Opened by Anaphory almost 4 years ago - 1 comment

#154 - beagle install issue

Issue - State: closed - Opened by oscarIM almost 4 years ago - 1 comment

#153 - BEAGLE with java11?

Issue - State: open - Opened by KatelCM almost 4 years ago - 1 comment

#152 - Failed to load BEAGLE library: no hmsbeagle32 in java.library.path

Issue - State: closed - Opened by andreas-chrysostomou about 4 years ago - 3 comments

#150 - cannot remove ‘BeagleCUDA_kernels.h’: No such file or directory

Issue - State: open - Opened by biozhajie over 4 years ago - 2 comments

#149 - Error: Core dumped using -beagle_gpu option with beast

Issue - State: open - Opened by evolozzy over 4 years ago

#148 - BEAGLE doesn't recognize GPU

Issue - State: closed - Opened by margot-l over 4 years ago - 5 comments

#147 - FAIL: matrixtest - running "make check"

Issue - State: open - Opened by fvfreitas over 4 years ago - 2 comments

#146 - BEAST cannot find Beagle library

Issue - State: closed - Opened by aine-c over 4 years ago - 7 comments

#145 - Cannot run multi-partition Markov-modulated model on GPU

Issue - State: open - Opened by GuyBaele almost 5 years ago
Labels: bug

#144 - Fix calcEdgeLogDerivativesStates implementations.

Pull Request - State: closed - Opened by 4ment almost 5 years ago

#143 - Add libtoolize to autogen.sh

Pull Request - State: closed - Opened by matsen almost 5 years ago - 1 comment

#142 - Compiling fails to find OpenCL

Issue - State: closed - Opened by TorstenEriksson about 5 years ago - 7 comments

#141 - no hmsbeagle-jni in java.library.path

Issue - State: closed - Opened by Adelaam over 5 years ago - 3 comments

#140 - Instal fail on supercomputer

Issue - State: closed - Opened by LTBroda over 5 years ago - 3 comments

#139 - Category models

Pull Request - State: closed - Opened by ayresdl over 5 years ago

#138 - Synthetictest Fail

Issue - State: closed - Opened by Rengyx over 5 years ago - 5 comments

#137 - Adding files to the .gitignore.

Pull Request - State: closed - Opened by matsen over 5 years ago

#135 - Cannot access last GPU using cuda

Issue - State: closed - Opened by yesimon almost 6 years ago - 4 comments

#134 - configure: error: cannot find JDK header files

Issue - State: open - Opened by jackckoch almost 6 years ago - 3 comments

#133 - fail make check at tinytest test-suite

Issue - State: open - Opened by k-mcgrath almost 6 years ago

#132 - Some Unices don't append ".0.0" at the end of shared libraries, but just ".0"

Issue - State: closed - Opened by kusalananda almost 6 years ago - 3 comments

#131 - make check fails because /bin/sh is not bash

Issue - State: open - Opened by kusalananda almost 6 years ago

#130 - Beagle/Beast results in "Unable to load CPU plugin"

Issue - State: closed - Opened by ostueker about 6 years ago - 1 comment

#129 - Compilation Error

Issue - State: open - Opened by narendra-cs about 6 years ago

#128 - Installation error GPUInterfaceOpenCL.cpp:760:41: error

Issue - State: open - Opened by daviortega about 6 years ago

#126 - Error install beagle-lib - opencl and cuda

Issue - State: closed - Opened by vagnerfonseca over 6 years ago - 1 comment

#125 - Added resource benchmarking method

Pull Request - State: closed - Opened by ayresdl over 6 years ago