bcgsc/pori_graphkb_python issues and pull requests

#117 - Task/kbdev 1163 tests ensembl protein

Pull Request - State: closed - Opened by mathieulemieux 9 months ago

#116 - SDEV-4155 - switch to source.displayName for Pharmacogenomic filterin…

Pull Request - State: open - Opened by dustinbleile 9 months ago - 1 comment

#115 - merge back to develop

Pull Request - State: closed - Opened by elewis2 11 months ago

#114 - Feature/make preferred gene source configurable

Pull Request - State: closed - Opened by elewis2 11 months ago - 1 comment

#113 - Release/v1.15.0 kb statement related genes

Pull Request - State: closed - Opened by dustinbleile 12 months ago - 1 comment

#112 - lint noqa of flake8 errors in test_statement.py from pytest fixture.

Pull Request - State: closed - Opened by dustinbleile 12 months ago - 1 comment

#111 - linting only - 'venv/bin/isort --profile black --atomic -l 100 graphk…

Pull Request - State: open - Opened by dustinbleile 12 months ago - 6 comments

#110 - cancerGeneListMatch and kbStatementRelated flags

Pull Request - State: closed - Opened by mathieulemieux 12 months ago - 2 comments

#109 - Release/v1.14.0

Pull Request - State: closed - Opened by mathieulemieux about 1 year ago - 1 comment
Labels: release

#108 - Bugfix/kbdev 1133 incorrect matching

Pull Request - State: open - Opened by mathieulemieux about 1 year ago - 1 comment

#107 - Add cancer_gene flag to get_gene_information

Pull Request - State: closed - Opened by mathieulemieux about 1 year ago - 1 comment

#106 - Merge back master into develop

Pull Request - State: closed - Opened by mathieulemieux about 1 year ago

#105 - Release/v1.13.0

Pull Request - State: closed - Opened by mathieulemieux about 1 year ago - 1 comment
Labels: release

#104 - Bugfix/kbdev 1115 get cancer genes

Pull Request - State: closed - Opened by mathieulemieux about 1 year ago - 2 comments

#103 - Merge back master into develop

Pull Request - State: closed - Opened by mathieulemieux about 1 year ago

#102 - Release/v1.12.0

Pull Request - State: closed - Opened by mathieulemieux about 1 year ago

#101 - Fix threshold for structural variants

Pull Request - State: closed - Opened by mathieulemieux about 1 year ago - 1 comment

#100 - Bugfix/kbdev 1080 fix get cancer predisposition info

Pull Request - State: closed - Opened by mathieulemieux about 1 year ago - 1 comment

#99 - Bugfix/kbdev 1056 matching bug

Pull Request - State: closed - Opened by mathieulemieux over 1 year ago - 1 comment

#98 - SDEV-3006 - add pharmacogenomic @rid #160:5557 as UGT1A1 gene positio…

Pull Request - State: closed - Opened by dustinbleile over 1 year ago - 5 comments

#97 - Backmerge master

Pull Request - State: closed - Opened by dustinbleile over 1 year ago - 1 comment

#96 - Master -> develop

Pull Request - State: closed - Opened by dustinbleile over 1 year ago - 1 comment

#95 - Refactor/lint black s

Pull Request - State: closed - Opened by dustinbleile over 1 year ago - 1 comment

#94 - Release/v1.11.0 gene information

Pull Request - State: closed - Opened by dustinbleile over 1 year ago - 1 comment

#93 - Setup.cfg versions

Pull Request - State: closed - Opened by dustinbleile over 1 year ago

#92 - Improvement/gero 337 gene flags

Pull Request - State: closed - Opened by dustinbleile over 1 year ago - 2 comments

#91 - Merge back master into develop

Pull Request - State: closed - Opened by mathieulemieux over 1 year ago

#90 - Release/v1.10.2

Pull Request - State: closed - Opened by mathieulemieux over 1 year ago - 1 comment
Labels: release

#89 - Bugfix/kbdev 1044 substitution mismatched to nonsense

Pull Request - State: closed - Opened by mathieulemieux over 1 year ago - 5 comments

#88 - Merging back master into develop

Pull Request - State: closed - Opened by mathieulemieux over 1 year ago

#87 - Update GH workflow for PyPi publishing on released, #2

Pull Request - State: closed - Opened by mathieulemieux over 1 year ago - 1 comment

#86 - Update GH workflow for PyPi publishing on released

Pull Request - State: closed - Opened by mathieulemieux over 1 year ago - 3 comments
Labels: bug

#85 - Release/v1.10.0

Pull Request - State: closed - Opened by mathieulemieux over 1 year ago - 1 comment
Labels: release

#84 - Bugfix/kbdev 1038 fixing match positional variant urllib2

Pull Request - State: closed - Opened by mathieulemieux over 1 year ago

#83 - Release/v1.9.1

Pull Request - State: closed - Opened by mathieulemieux over 1 year ago - 1 comment

#82 - gh-pages docs workflow rolled back to python 3.8

Pull Request - State: closed - Opened by mathieulemieux over 1 year ago - 1 comment

#81 - Back merge of master from previous release

Pull Request - State: closed - Opened by dustinbleile over 1 year ago

#80 - Add support for GeneralizationOf in match

Pull Request - State: closed - Opened by mathieulemieux over 1 year ago - 1 comment

#79 - SDEV-3381 - update pypipublish.yml and publishdevdocs.yml to use acti…

Pull Request - State: closed - Opened by dustinbleile almost 2 years ago - 1 comment

#78 - Release/v1.9.0 test updates helper funcs

Pull Request - State: closed - Opened by dustinbleile almost 2 years ago - 1 comment

#77 - Bugfix/GitHub actions timeouts turn tests on

Pull Request - State: closed - Opened by dustinbleile almost 2 years ago

#76 - Bugfix/GitHub actions timeouts

Pull Request - State: closed - Opened by elewis2 almost 2 years ago - 3 comments

#75 - Release/v1.9.0 helper functions

Pull Request - State: closed - Opened by dustinbleile almost 2 years ago - 9 comments

#74 - SDEV-3342 - add get_statements_from_variants function - adapted from …

Pull Request - State: closed - Opened by dustinbleile about 2 years ago - 2 comments

#73 - Release/v1.8.0 constants usablity

Pull Request - State: closed - Opened by dustinbleile about 2 years ago - 2 comments

#72 - Feature/sdev 3256 gene list updates pharma cancer predisp

Pull Request - State: closed - Opened by dustinbleile about 2 years ago - 7 comments

#71 - Feature/sdev 3256 gene list updates

Pull Request - State: closed - Opened by dustinbleile about 2 years ago - 2 comments

#70 - GERO-295 - add STATEMENT_RETURN_PROPERTIES constant from pori_ipr_python

Pull Request - State: closed - Opened by dustinbleile about 2 years ago - 1 comment

#69 - Bugfix/gero 303 promoter matches missed without leading 1

Pull Request - State: closed - Opened by dustinbleile about 2 years ago - 1 comment

#68 - Refactor - group constants into constants.py

Pull Request - State: closed - Opened by dustinbleile about 2 years ago

#67 - Bugfix/gero 299 hgvs cds hgvs genomic matching misssense to nonsense

Pull Request - State: closed - Opened by dustinbleile about 2 years ago - 1 comment

#66 - increase typing_extension version; remove failing test

Pull Request - State: closed - Opened by mattdoug604 over 2 years ago - 1 comment

#65 - back merge of master

Pull Request - State: closed - Opened by dustinbleile over 2 years ago - 2 comments

#64 - Release/1.7.0 pharmacogenomic cancer predisposition categories setup updates

Pull Request - State: closed - Opened by dustinbleile almost 3 years ago - 3 comments
Labels: release

#63 - Feature/gero 272 pharmacogenomic category

Pull Request - State: closed - Opened by dustinbleile almost 3 years ago

#50 - Use pyproject.toml with setup.cfg instead of setup.py

Pull Request - State: closed - Opened by Nithriel almost 3 years ago - 3 comments

#49 - Master back to dev

Pull Request - State: closed - Opened by creisle almost 3 years ago - 1 comment

#48 - Add zenodo badge

Pull Request - State: closed - Opened by creisle almost 3 years ago
Labels: documentation

#47 - Add zenodo badge to README

Pull Request - State: closed - Opened by creisle almost 3 years ago - 1 comment
Labels: documentation

#46 - Release/v1.6.0

Pull Request - State: closed - Opened by creisle almost 3 years ago
Labels: release

#45 - Release/v1.5.5

Pull Request - State: closed - Opened by creisle almost 3 years ago - 1 comment
Labels: devops

#44 - Use pytest parametrize to improve test readability

Pull Request - State: closed - Opened by creisle about 3 years ago - 1 comment

#43 - fix: Ignore null positions for comparisons

Pull Request - State: closed - Opened by creisle over 3 years ago
Labels: bug

#42 - Bugfix/gero 217 allow start range none

Pull Request - State: closed - Opened by dustinbleile over 3 years ago - 2 comments

#41 - back merge

Pull Request - State: closed - Opened by dustinbleile over 3 years ago

#40 - Feature/issue 39 arbitrary base queries

Pull Request - State: closed - Opened by creisle over 3 years ago - 1 comment
Labels: enhancement

#39 - Support Arbitrary base Queries

Issue - State: closed - Opened by creisle over 3 years ago
Labels: enhancement

#38 - Point to new docs site

Pull Request - State: closed - Opened by creisle over 3 years ago - 1 comment
Labels: documentation

#37 - master back to dev

Pull Request - State: closed - Opened by creisle over 3 years ago

#36 - Fix typo in extras require in workflow

Pull Request - State: closed - Opened by creisle over 3 years ago
Labels: documentation

#35 - Add example for list of variants in text file

Pull Request - State: closed - Opened by creisle over 3 years ago
Labels: documentation

#34 - Feature/documentation updates

Pull Request - State: closed - Opened by creisle over 3 years ago - 1 comment
Labels: documentation

#33 - Feature/documentation updates

Pull Request - State: closed - Opened by creisle over 3 years ago
Labels: documentation

#32 - master back to dev

Pull Request - State: closed - Opened by creisle over 3 years ago

#31 - Release/v1.5.4

Pull Request - State: closed - Opened by creisle over 3 years ago
Labels: documentation, release

#30 - Release/v1.5.3

Pull Request - State: closed - Opened by creisle over 3 years ago - 1 comment
Labels: release

#29 - Feature/add filenames

Pull Request - State: closed - Opened by creisle over 3 years ago - 1 comment
Labels: documentation

#28 - Add example script

Pull Request - State: closed - Opened by creisle over 3 years ago - 1 comment
Labels: documentation

#27 - Feature/pori link

Pull Request - State: closed - Opened by creisle over 3 years ago - 1 comment
Labels: documentation

#26 - Feature/jupyter

Pull Request - State: closed - Opened by creisle over 3 years ago - 2 comments
Labels: documentation

#25 - Release/v1.5.2

Pull Request - State: closed - Opened by creisle over 3 years ago - 1 comment
Labels: documentation

#24 - Add disease matching docs

Pull Request - State: closed - Opened by creisle over 3 years ago - 1 comment
Labels: documentation

#23 - master back to dev

Pull Request - State: closed - Opened by creisle over 4 years ago

#22 - Release/v1.5.1

Pull Request - State: closed - Opened by creisle over 4 years ago - 1 comment
Labels: enhancement

#21 - Release/v1.5.0

Pull Request - State: closed - Opened by creisle over 4 years ago - 1 comment
Labels: enhancement

#20 - Feature/statement categorizing

Pull Request - State: closed - Opened by creisle over 4 years ago
Labels: enhancement

#19 - Release/v1.4.0

Pull Request - State: closed - Opened by creisle over 4 years ago
Labels: enhancement

#18 - Feature/gero 131 gene source

Pull Request - State: closed - Opened by creisle over 4 years ago
Labels: enhancement

#17 - master back to dev

Pull Request - State: closed - Opened by creisle over 4 years ago

#16 - Release/v1.3.7

Pull Request - State: closed - Opened by creisle over 4 years ago - 1 comment
Labels: enhancement

#15 - Release/v1.3.6

Pull Request - State: closed - Opened by creisle over 4 years ago
Labels: enhancement

#14 - Feature/explicit feature matching

Pull Request - State: closed - Opened by creisle over 4 years ago - 1 comment
Labels: enhancement

#13 - bump version to 1.3.6

Pull Request - State: closed - Opened by creisle over 4 years ago - 1 comment

#12 - Bugfix/issue 11 chromosome x error

Pull Request - State: closed - Opened by creisle over 4 years ago - 1 comment

#11 - Missing chromosomes as genomic features

Issue - State: closed - Opened by dustinbleile over 4 years ago
Labels: bug

#10 - Only limit dependencies by major version changes

Pull Request - State: closed - Opened by creisle over 4 years ago

#9 - merge master back to dev

Pull Request - State: closed - Opened by creisle over 4 years ago

#8 - Release/v1.3.5

Pull Request - State: closed - Opened by creisle over 4 years ago - 1 comment

#7 - Bugfix/issue 5 keyerror subject

Pull Request - State: closed - Opened by creisle over 4 years ago
Labels: bug

#6 - merge master back to dev

Pull Request - State: closed - Opened by creisle over 4 years ago

GitHub / bcgsc/pori_graphkb_python issues and pull requests