bcgsc/pori_graphkb_loader issues and pull requests

#66 - Feature/add tests for helper methods 39

Pull Request - State: closed - Opened by mathieulemieux about 3 years ago - 5 comments
Labels: tests

#65 - Improve getting started docs

Pull Request - State: closed - Opened by creisle about 3 years ago - 4 comments
Labels: documentation

#64 - Feature/civic unaltered function

Pull Request - State: closed - Opened by cgrisdale about 3 years ago - 5 comments
Labels: enhancement, CIViC

#63 - Feature/node 16

Pull Request - State: closed - Opened by creisle about 3 years ago - 1 comment
Labels: bug, enhancement, devops

#63 - Feature/node 16

Pull Request - State: closed - Opened by creisle about 3 years ago - 1 comment
Labels: bug, enhancement, devops

#62 - Feature/moa support

Pull Request - State: closed - Opened by creisle about 3 years ago
Labels: enhancement

#62 - Feature/moa support

Pull Request - State: closed - Opened by creisle about 3 years ago
Labels: enhancement

#61 - FDA SRS UNII download links no longer scriptable

Issue - State: open - Opened by creisle about 3 years ago - 1 comment
Labels: bug

#61 - FDA SRS UNII download links no longer scriptable

Issue - State: open - Opened by creisle about 3 years ago - 1 comment
Labels: bug

#60 - Support loading CIViC variant EGFR vIII

Issue - State: open - Opened by cgrisdale about 3 years ago

#60 - Support loading CIViC variant EGFR vIII

Issue - State: open - Opened by cgrisdale about 3 years ago

#59 - Load CIViC evidence with clinical significance of Unaltered Function

Issue - State: closed - Opened by cgrisdale about 3 years ago
Labels: enhancement, good first issue, CIViC

#59 - Load CIViC evidence with clinical significance of Unaltered Function

Issue - State: closed - Opened by cgrisdale about 3 years ago
Labels: enhancement, good first issue, CIViC

#40 - Add mapping of terms/fields from civic to GraphKB

Pull Request - State: closed - Opened by creisle about 3 years ago - 1 comment
Labels: documentation

#39 - Add tests for GraphKB Module Helper Methods

Issue - State: closed - Opened by creisle about 3 years ago - 3 comments
Labels: good first issue, tests

#38 - Write loader for Molecular Oncology Almanac knowledgebase

Issue - State: closed - Opened by cgrisdale about 3 years ago - 4 comments

#38 - Write loader for Molecular Oncology Almanac knowledgebase

Issue - State: closed - Opened by cgrisdale about 3 years ago - 4 comments

#37 - Release/v6.1.0

Pull Request - State: closed - Opened by creisle about 3 years ago
Labels: release

#37 - Release/v6.1.0

Pull Request - State: closed - Opened by creisle about 3 years ago
Labels: release

#36 - Add "Getting Started" docs for new developers

Issue - State: closed - Opened by creisle about 3 years ago
Labels: documentation

#35 - Move to node 16

Issue - State: closed - Opened by creisle about 3 years ago - 1 comment
Labels: devops

#34 - Master back to dev

Pull Request - State: closed - Opened by creisle about 3 years ago

#34 - Master back to dev

Pull Request - State: closed - Opened by creisle about 3 years ago

#33 - Add zenodo badge to README

Pull Request - State: closed - Opened by creisle about 3 years ago
Labels: documentation

#32 - Release/v6.0.0

Pull Request - State: closed - Opened by creisle about 3 years ago
Labels: release

#31 - Feature/civic_no_resistance

Pull Request - State: closed - Opened by cgrisdale over 3 years ago - 1 comment
Labels: enhancement, CIViC

#31 - Feature/civic_no_resistance

Pull Request - State: closed - Opened by cgrisdale over 3 years ago - 1 comment
Labels: enhancement, CIViC

#30 - Write unit tests for NCIt helper methods

Issue - State: closed - Opened by creisle over 3 years ago
Labels: good first issue, tests

#30 - Write unit tests for NCIt helper methods

Issue - State: closed - Opened by creisle over 3 years ago
Labels: good first issue, tests

#29 - Write Test for Ensembl Protein Loader

Issue - State: closed - Opened by creisle over 3 years ago - 1 comment
Labels: tests

#29 - Write Test for Ensembl Protein Loader

Issue - State: closed - Opened by creisle over 3 years ago - 1 comment
Labels: tests

#28 - Feature/civic abstracts

Pull Request - State: closed - Opened by creisle over 3 years ago - 6 comments
Labels: enhancement, CIViC

#28 - Feature/civic abstracts

Pull Request - State: closed - Opened by creisle over 3 years ago - 6 comments
Labels: enhancement, CIViC

#27 - Bug/civic doesnotsupport

Pull Request - State: closed - Opened by cgrisdale over 3 years ago - 2 comments
Labels: CIViC

#27 - Bug/civic doesnotsupport

Pull Request - State: closed - Opened by cgrisdale over 3 years ago - 2 comments
Labels: CIViC

#26 - Sync deleted evidence items from CIViC

Pull Request - State: closed - Opened by creisle over 3 years ago - 1 comment
Labels: CIViC

#26 - Sync deleted evidence items from CIViC

Pull Request - State: closed - Opened by creisle over 3 years ago - 1 comment
Labels: CIViC

#25 - Block importing of CIViC Does not support terms that don't have matching Relevance term

Issue - State: closed - Opened by cgrisdale over 3 years ago - 1 comment
Labels: bug, CIViC

#25 - Block importing of CIViC Does not support terms that don't have matching Relevance term

Issue - State: closed - Opened by cgrisdale over 3 years ago - 1 comment
Labels: bug, CIViC

#24 - Create diagrams of relevance term mappings between CIViC and graphkb

Issue - State: closed - Opened by cgrisdale over 3 years ago
Labels: documentation, CIViC

#24 - Create diagrams of relevance term mappings between CIViC and graphkb

Issue - State: closed - Opened by cgrisdale over 3 years ago
Labels: documentation, CIViC

#23 - Feature/source add function

Pull Request - State: closed - Opened by creisle over 3 years ago - 6 comments
Labels: enhancement

#23 - Feature/source add function

Pull Request - State: closed - Opened by creisle over 3 years ago - 6 comments
Labels: enhancement

#22 - fix(ncit): fix subclass relationship loader

Pull Request - State: closed - Opened by creisle over 3 years ago - 1 comment
Labels: bug, enhancement

#21 - master back to dev

Pull Request - State: closed - Opened by cgrisdale over 3 years ago - 1 comment

#20 - Support sync of deleted entries from CIViC

Issue - State: closed - Opened by creisle over 3 years ago
Labels: enhancement, CIViC

#19 - CIViC Resistance Does not Support

Issue - State: closed - Opened by creisle over 3 years ago
Labels: enhancement, CIViC

#18 - Feature/trusted curators

Pull Request - State: closed - Opened by creisle over 3 years ago - 3 comments
Labels: enhancement

#18 - Feature/trusted curators

Pull Request - State: closed - Opened by creisle over 3 years ago - 3 comments
Labels: enhancement

#17 - Release/v5.1.1

Pull Request - State: closed - Opened by cgrisdale over 3 years ago - 3 comments
Labels: release

#17 - Release/v5.1.1

Pull Request - State: closed - Opened by cgrisdale over 3 years ago - 3 comments
Labels: release

#16 - Feature/civic fusion exons 2

Pull Request - State: closed - Opened by cgrisdale over 3 years ago - 2 comments

#16 - Feature/civic fusion exons 2

Pull Request - State: closed - Opened by cgrisdale over 3 years ago - 2 comments

#15 - Feature/civic fusion exons

Pull Request - State: closed - Opened by cgrisdale over 3 years ago - 1 comment

#15 - Feature/civic fusion exons

Pull Request - State: closed - Opened by cgrisdale over 3 years ago - 1 comment

#14 - Support new CIViC fusion variant naming convention

Issue - State: closed - Opened by cgrisdale over 3 years ago
Labels: enhancement, CIViC

#14 - Support new CIViC fusion variant naming convention

Issue - State: closed - Opened by cgrisdale over 3 years ago
Labels: enhancement, CIViC

#13 - Feature/civic evidence direction1

Pull Request - State: closed - Opened by cgrisdale over 3 years ago - 3 comments

#13 - Feature/civic evidence direction1

Pull Request - State: closed - Opened by cgrisdale over 3 years ago - 3 comments

#12 - Add tests for translateRelevance

Pull Request - State: closed - Opened by creisle almost 4 years ago - 3 comments

#12 - Add tests for translateRelevance

Pull Request - State: closed - Opened by creisle almost 4 years ago - 3 comments

#11 - Improve doc strings

Pull Request - State: closed - Opened by creisle almost 4 years ago - 1 comment
Labels: documentation

#11 - Improve doc strings

Pull Request - State: closed - Opened by creisle almost 4 years ago - 1 comment
Labels: documentation

#10 - Master back to dev

Pull Request - State: closed - Opened by creisle almost 4 years ago - 1 comment

#10 - Master back to dev

Pull Request - State: closed - Opened by creisle almost 4 years ago - 1 comment

#9 - Add support for importing CIViC evidence with evidence direction "does not support sensitivity"

Issue - State: closed - Opened by cgrisdale almost 4 years ago - 1 comment
Labels: enhancement, CIViC

#9 - Add support for importing CIViC evidence with evidence direction "does not support sensitivity"

Issue - State: closed - Opened by cgrisdale almost 4 years ago - 1 comment
Labels: enhancement, CIViC

#8 - Add link to main PORI repo

Pull Request - State: closed - Opened by creisle almost 4 years ago - 2 comments
Labels: documentation

#7 - Release/v5.1.0

Pull Request - State: closed - Opened by creisle almost 4 years ago - 2 comments

#6 - Feature/snakemake

Pull Request - State: closed - Opened by creisle almost 4 years ago - 3 comments

#5 - Support new CIViC Evidence Item type

Issue - State: closed - Opened by creisle almost 4 years ago - 1 comment
Labels: enhancement, CIViC

#4 - Feature/clininfo 167 nonspecific variant loader

Pull Request - State: closed - Opened by creisle almost 4 years ago - 3 comments
Labels: enhancement

#3 - Feature/kbdev 935 improve cgi loader

Pull Request - State: closed - Opened by creisle almost 4 years ago - 2 comments

#2 - Feature/kbdev 945 add pmc4232638 loader

Pull Request - State: closed - Opened by creisle almost 4 years ago - 2 comments
Labels: enhancement

#1 - Feature/kbdev 918 add pmc4232638 loader

Pull Request - State: closed - Opened by creisle almost 4 years ago - 5 comments

GitHub / bcgsc/pori_graphkb_loader issues and pull requests