Ecosyste.ms: Issues

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GitHub / bcgsc/pavfinder issues and pull requests

#24 - add bash script for fusion-bloom

Pull Request - State: closed - Opened by kmnip over 2 years ago

#23 - Minor bug fixes

Pull Request - State: closed - Opened by kmnip over 2 years ago

#22 - provide support for conda

Pull Request - State: closed - Opened by kmnip over 2 years ago - 9 comments

#21 - how are "dup" vs "ITD" defined by pavfinder

Issue - State: closed - Opened by rhalperin over 2 years ago - 1 comment

#20 - Add conda recipe

Issue - State: closed - Opened by kmnip over 2 years ago - 13 comments
Labels: enhancement

#19 - false negative with "cannot map to exon" in log

Issue - State: open - Opened by rhalperin over 2 years ago - 18 comments

#17 - Error running tap2.py on example data: input file does not exist

Issue - State: closed - Opened by rhalperin almost 3 years ago - 3 comments

#16 - FusionBloom KeyError - while running pavfinder

Issue - State: closed - Opened by think-o over 3 years ago - 13 comments

#15 - Fusion-bloom reporting "TypeError"

Issue - State: closed - Opened by Rohanbha almost 4 years ago - 2 comments

#15 - Fusion-bloom reporting "TypeError"

Issue - State: closed - Opened by Rohanbha almost 4 years ago - 2 comments

#14 - Number of cpus used by pavfinder

Issue - State: closed - Opened by af8 about 4 years ago - 5 comments

#13 - Error running pavfinder on a large sample

Issue - State: closed - Opened by af8 about 4 years ago - 5 comments

#12 - FusionBloom - some cases generate error in minimap2 | samtools command

Issue - State: closed - Opened by af8 about 4 years ago - 3 comments

#11 - Output

Issue - State: closed - Opened by yanlina0205 about 4 years ago - 2 comments

#10 - AttributeError: 'NoneType' object has no attribute 'get_sequence'

Issue - State: closed - Opened by yanlina0205 about 4 years ago - 13 comments

#9 - Run PV to detect transcriptome structural variants

Issue - State: closed - Opened by yanlina0205 about 4 years ago - 3 comments
Labels: question

#8 - filter_fasta script generates erroneous "transcripts.filtered.fa"

Issue - State: closed - Opened by af8 almost 5 years ago - 1 comment

#7 - GTF problem with transcript_id record - KeyError: 'transcript_id'

Issue - State: closed - Opened by af8 almost 5 years ago - 1 comment

#6 - Example output files?

Issue - State: closed - Opened by stianlagstad almost 5 years ago - 2 comments

#5 - fix filter_fasta

Pull Request - State: closed - Opened by gmarcais almost 5 years ago - 2 comments

#4 - Fixed loading __version__ from pavfinder

Pull Request - State: closed - Opened by gmarcais almost 5 years ago - 2 comments

#3 - KeyError on transcript ID

Issue - State: closed - Opened by mcmero over 5 years ago - 9 comments

#2 - python 3 support

Issue - State: closed - Opened by jplaverdure over 5 years ago - 2 comments

#1 - biobloomcategorizer: invalid option -- 'a'

Issue - State: closed - Opened by mcmero almost 6 years ago - 7 comments