bcgsc/ntsynt issues and pull requests

#55 - performance on distantly related species?

Issue - State: open - Opened by xiaoyezao 25 days ago - 1 comment
Labels: question

#54 - Fix CI

Pull Request - State: closed - Opened by lcoombe 25 days ago

#53 - Update README.md

Pull Request - State: closed - Opened by lcoombe about 2 months ago

#52 - Update README.md

Pull Request - State: closed - Opened by warrenlr about 2 months ago

#51 - Fix macOS CI - install conda via miniforge

Pull Request - State: closed - Opened by lcoombe about 2 months ago

#50 - Use multi-character config keys to fix error with snakemake v8.17.0

Pull Request - State: closed - Opened by lcoombe 3 months ago

#49 - Prepare for release v1.0.2

Pull Request - State: closed - Opened by lcoombe 3 months ago

#48 - Fix to remove SyntaxWarning

Pull Request - State: closed - Opened by lcoombe 3 months ago

#47 - How to adjust the -k and -w for multiple genome synteny analysis?

Issue - State: closed - Opened by xxllgg 5 months ago - 3 comments

#46 - Parameters for detecting small-scale intra-species synteny?

Issue - State: closed - Opened by zhaotao1987 6 months ago - 3 comments

#45 - Problem to install ntsynt with conda

Issue - State: closed - Opened by Enorya 6 months ago - 3 comments

#44 - Adjustments to ribbon plots R script

Pull Request - State: closed - Opened by lcoombe 7 months ago

#43 - Singularity container creation

Issue - State: closed - Opened by KristinaGagalova 7 months ago - 3 comments

#42 - ntSynt installation

Issue - State: closed - Opened by Yunxiao-web 7 months ago - 3 comments

#41 - Prepare for release v1.0.1

Pull Request - State: closed - Opened by lcoombe 7 months ago

#40 - Fixes for gggenomes visualization scripts

Pull Request - State: closed - Opened by lcoombe 8 months ago

#39 - Update README.md - tip for estimating sequence divergences

Pull Request - State: closed - Opened by lcoombe 8 months ago

#38 - Add --fastas_list to ntSynt

Pull Request - State: closed - Opened by lcoombe 8 months ago

#37 - Update btllib

Pull Request - State: closed - Opened by lcoombe 8 months ago

#36 - Computing synteny blocks between four genomes - missing links in ribbon plot

Issue - State: closed - Opened by mariamadrid19 8 months ago - 6 comments

#35 - Update analysis scripts

Pull Request - State: closed - Opened by lcoombe 9 months ago

#34 - Add biorxiv citation

Pull Request - State: closed - Opened by lcoombe 10 months ago

#33 - Update README.md with conda install instructions

Pull Request - State: closed - Opened by lcoombe 10 months ago

#32 - Update README.md - Add releases badge

Pull Request - State: closed - Opened by lcoombe 10 months ago

#31 - Prepare for release v1.0.0

Pull Request - State: closed - Opened by lcoombe 10 months ago

#30 - Improvements to driver scripts for ntSynt

Pull Request - State: closed - Opened by lcoombe 10 months ago

#29 - Add check for no paths found

Pull Request - State: closed - Opened by lcoombe 10 months ago

#28 - Update ribbon plots approach to allow for specified genome order

Pull Request - State: closed - Opened by lcoombe 10 months ago

#27 - Update visualization example images

Pull Request - State: closed - Opened by lcoombe 12 months ago

#26 - Update README.md

Pull Request - State: closed - Opened by lcoombe 12 months ago

#25 - Add new example images, tweaks to documentation and script naming

Pull Request - State: closed - Opened by lcoombe 12 months ago

#25 - Add new example images, tweaks to documentation and script naming

Pull Request - State: closed - Opened by lcoombe 12 months ago

#24 - Add chromosome paint plots scripts and instructions

Pull Request - State: closed - Opened by lcoombe 12 months ago

#24 - Add chromosome paint plots scripts and instructions

Pull Request - State: closed - Opened by lcoombe 12 months ago

#23 - Add gggenomes example script

Pull Request - State: closed - Opened by lcoombe 12 months ago