Ecosyste.ms: Issues

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GitHub / bcgsc/goldpolish issues and pull requests

#33 - modified yml file to download conda for macOS CI tests

Pull Request - State: closed - Opened by emilyyzhangg about 2 months ago

#33 - modified yml file to download conda for macOS CI tests

Pull Request - State: closed - Opened by emilyyzhangg about 2 months ago

#32 - Allowing other file endings to be output by GP-Target

Pull Request - State: closed - Opened by emilyyzhangg about 2 months ago

#31 - Changing CLI Output Parameter

Pull Request - State: closed - Opened by emilyyzhangg about 2 months ago

#31 - Changing CLI Output Parameter

Pull Request - State: closed - Opened by emilyyzhangg about 2 months ago

#30 - Small change to the README file

Pull Request - State: closed - Opened by emilyyzhangg about 2 months ago

#30 - Small change to the README file

Pull Request - State: closed - Opened by emilyyzhangg about 2 months ago

#29 - Removing single-character params in snakemake file

Pull Request - State: closed - Opened by emilyyzhangg about 2 months ago

#28 - Fix to seqindex.cpp to allow tabs in header line

Pull Request - State: closed - Opened by lcoombe 2 months ago

#27 - Update README.md

Pull Request - State: closed - Opened by lcoombe 8 months ago

#27 - Update README.md

Pull Request - State: closed - Opened by lcoombe 8 months ago

#26 - merging master into GP-T branch

Pull Request - State: closed - Opened by emilyyzhangg 8 months ago

#26 - merging master into GP-T branch

Pull Request - State: closed - Opened by emilyyzhangg 8 months ago

#25 - Add check to ntEdit

Pull Request - State: closed - Opened by lcoombe 8 months ago

#25 - Add check to ntEdit

Pull Request - State: closed - Opened by lcoombe 8 months ago

#24 - Snakemake changes

Pull Request - State: closed - Opened by emilyyzhangg 8 months ago

#24 - Snakemake changes

Pull Request - State: closed - Opened by emilyyzhangg 8 months ago

#23 - updating default k and w params

Pull Request - State: closed - Opened by emilyyzhangg 10 months ago

#23 - updating default k and w params

Pull Request - State: closed - Opened by emilyyzhangg 10 months ago

#22 - Add ci

Pull Request - State: closed - Opened by emilyyzhangg 10 months ago

#21 - Add ci

Pull Request - State: closed - Opened by emilyyzhangg 12 months ago

#20 - getting rid of some snakemake rules

Pull Request - State: closed - Opened by emilyyzhangg about 1 year ago

#20 - getting rid of some snakemake rules

Pull Request - State: closed - Opened by emilyyzhangg about 1 year ago

#19 - update btllib version in README

Pull Request - State: closed - Opened by emilyyzhangg about 1 year ago

#19 - update btllib version in README

Pull Request - State: closed - Opened by emilyyzhangg about 1 year ago

#18 - goldrush-edit -> goldpolish and changes to README

Pull Request - State: closed - Opened by emilyyzhangg about 1 year ago

#18 - goldrush-edit -> goldpolish and changes to README

Pull Request - State: closed - Opened by emilyyzhangg about 1 year ago

#17 - use conda llvm

Pull Request - State: closed - Opened by jwcodee over 1 year ago

#15 - Ensure GoldPolish subsampling is the same across different runs

Pull Request - State: closed - Opened by jwcodee over 1 year ago - 4 comments

#14 - Make call to `make` explicit for goldrush-edit-polish-batch

Pull Request - State: closed - Opened by lcoombe over 1 year ago - 1 comment

#14 - Make call to `make` explicit for goldrush-edit-polish-batch

Pull Request - State: closed - Opened by lcoombe over 1 year ago - 1 comment

#13 - Update README, add LICENSE

Pull Request - State: closed - Opened by lcoombe over 1 year ago - 2 comments

#12 - Fix for launching `goldrush-edit-make` for docker image

Pull Request - State: closed - Opened by lcoombe over 1 year ago

#11 - Polishing failure

Issue - State: closed - Opened by rwhetten almost 2 years ago - 5 comments

#10 - Use sensitive option for ntLink mapping

Pull Request - State: closed - Opened by lcoombe about 2 years ago

#9 - Add CI to GoldRush-Edit

Pull Request - State: closed - Opened by lcoombe about 2 years ago

#8 - Fix to first/last kmer edge case in DBGBloomAlgorithms.h for Sealer

Pull Request - State: closed - Opened by lcoombe about 2 years ago

#7 - Failure when running on mac

Issue - State: closed - Opened by lcoombe about 2 years ago - 1 comment

#6 - Fixing issues with rebasing synchronization fix

Pull Request - State: closed - Opened by lcoombe about 2 years ago

#5 - Fix synchronization issue causing intermittent failures

Pull Request - State: closed - Opened by lcoombe about 2 years ago

#4 - Polishing failures on certain datasets

Issue - State: closed - Opened by lcoombe about 2 years ago - 2 comments

#3 - Issue with checking boost dependency

Issue - State: closed - Opened by lcoombe over 2 years ago - 1 comment

#2 - Add k_ntLink and w_ntLink parameters to avoid collision with k/w from GoldRush-Path

Pull Request - State: closed - Opened by lcoombe over 2 years ago - 2 comments

#1 - Investigate impact of using presets with minimap2

Issue - State: open - Opened by lcoombe over 2 years ago - 1 comment